mRNA_P-wetherbeei_contig17344.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17344.2.1
Unique NamemRNA_P-wetherbeei_contig17344.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17344.2.1 vs. uniprot
Match: A0A6L5FNH0_9HYPH (Dihydrodipicolinate synthase family protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FNH0_9HYPH)

HSP 1 Score: 103 bits (256), Expect = 3.680e-25
Identity = 44/56 (78.57%), Postives = 51/56 (91.07%), Query Frame = 1
Query:    1 MKYSRLDAKEYARANMKGIWAASLMPFRPDLSMDEAGWRGNLRHWVDDLGIDGVFV 168
            M+YSRLDAK+YAR  M GIWAA+LMPFR DLS+DE G+RGNLRHWVDDLG+DGVF+
Sbjct:    1 MRYSRLDAKDYARERMTGIWAAALMPFRADLSVDEQGFRGNLRHWVDDLGVDGVFI 56          
BLAST of mRNA_P-wetherbeei_contig17344.2.1 vs. uniprot
Match: A0A6N9BGU6_9PROT (Dihydrodipicolinate synthase family protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N9BGU6_9PROT)

HSP 1 Score: 93.2 bits (230), Expect = 1.860e-23
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 1
Query:    1 MKYSRLDAKEYARANMKGIWAASLMPFRPDLSMDEAGWRGNLRHWVDDLGIDGVFV 168
            M Y R +AKE+ARA MKGIWAA+L PFR DLS+DEAG R N+RHWV+DLGIDG+F+
Sbjct:    1 MDYRRNEAKEHARARMKGIWAAALQPFREDLSIDEAGMRSNIRHWVEDLGIDGLFI 56          
BLAST of mRNA_P-wetherbeei_contig17344.2.1 vs. uniprot
Match: A0A4Q3JB98_9HYPH (Dihydrodipicolinate synthase family protein (Fragment) n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A4Q3JB98_9HYPH)

HSP 1 Score: 89.7 bits (221), Expect = 2.260e-22
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1
Query:    1 MKYSRLDAKEYARANMKGIWAASLMPFRPDLSMDEAGWRGNLRHWVDDLGIDGVFV 168
            MKY+R DAK Y RANMKGIWAA+L PF   L++DE G+R N+RHW DDLGIDG+F+
Sbjct:    1 MKYARKDAKAYTRANMKGIWAAALTPFTQSLAIDEDGFRENVRHWTDDLGIDGLFI 56          
BLAST of mRNA_P-wetherbeei_contig17344.2.1 vs. uniprot
Match: A0A849G9A5_9GAMM (Dihydrodipicolinate synthase family protein (Fragment) n=1 Tax=Woeseiaceae bacterium TaxID=2026806 RepID=A0A849G9A5_9GAMM)

HSP 1 Score: 89.0 bits (219), Expect = 3.240e-22
Identity = 37/56 (66.07%), Postives = 47/56 (83.93%), Query Frame = 1
Query:    1 MKYSRLDAKEYARANMKGIWAASLMPFRPDLSMDEAGWRGNLRHWVDDLGIDGVFV 168
            M YS+ DAK++AR NM+GIWAA+L PFR DLS+DEAG R N+RHW+DDL I G+F+
Sbjct:    1 MNYSKPDAKDHARENMRGIWAAALNPFRDDLSLDEAGLRANIRHWIDDLDIKGLFI 56          
BLAST of mRNA_P-wetherbeei_contig17344.2.1 vs. uniprot
Match: UPI000D699679 (dihydrodipicolinate synthase family protein n=1 Tax=Albibacillus kandeliae TaxID=2174228 RepID=UPI000D699679)

HSP 1 Score: 94.0 bits (232), Expect = 1.030e-21
Identity = 40/56 (71.43%), Postives = 49/56 (87.50%), Query Frame = 1
Query:    1 MKYSRLDAKEYARANMKGIWAASLMPFRPDLSMDEAGWRGNLRHWVDDLGIDGVFV 168
            MKYS+LDAK+YAR NMKGIWAA+L PF+PD + DEAG R N+RHWVDDL I+G+F+
Sbjct:    1 MKYSKLDAKDYARENMKGIWAAALNPFKPDGAFDEAGLRQNIRHWVDDLDINGLFI 56          
BLAST of mRNA_P-wetherbeei_contig17344.2.1 vs. uniprot
Match: A0A285PER3_9HYPH (4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Cohaesibacter gelatinilyticus TaxID=372072 RepID=A0A285PER3_9HYPH)

HSP 1 Score: 93.6 bits (231), Expect = 1.430e-21
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 1
Query:    1 MKYSRLDAKEYARANMKGIWAASLMPFRPDLSMDEAGWRGNLRHWVDDLGIDGVFV 168
            MKYS+ DAK+YARANMKGIWAA+L PF  D+S+DEAG R N+RHWVDDL I G+F+
Sbjct:    1 MKYSKHDAKDYARANMKGIWAAALNPFNNDMSLDEAGLRSNIRHWVDDLDIQGLFI 56          
BLAST of mRNA_P-wetherbeei_contig17344.2.1 vs. uniprot
Match: UPI001489FCA3 (dihydrodipicolinate synthase family protein n=1 Tax=Ruegeria sp. HKCCD8929 TaxID=2683006 RepID=UPI001489FCA3)

HSP 1 Score: 93.6 bits (231), Expect = 1.430e-21
Identity = 39/56 (69.64%), Postives = 50/56 (89.29%), Query Frame = 1
Query:    1 MKYSRLDAKEYARANMKGIWAASLMPFRPDLSMDEAGWRGNLRHWVDDLGIDGVFV 168
            MKYS+LDAK++AR +M+GIWAA+L PFRPDLS DEAG+  N+RHW+DDLGI G+F+
Sbjct:    1 MKYSKLDAKDHAREHMRGIWAAALNPFRPDLSFDEAGFCHNIRHWIDDLGIAGLFI 56          
BLAST of mRNA_P-wetherbeei_contig17344.2.1 vs. uniprot
Match: A0A1H2HIV3_9HYPH (4-hydroxy-tetrahydrodipicolinate synthase n=5 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1H2HIV3_9HYPH)

HSP 1 Score: 93.2 bits (230), Expect = 2.000e-21
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 1
Query:    1 MKYSRLDAKEYARANMKGIWAASLMPFRPDLSMDEAGWRGNLRHWVDDLGIDGVFV 168
            M YS+ DAK YARANMKGIWAA+L PFRPD S++E G R N+RHWVDDLGI G+F+
Sbjct:    1 MNYSKPDAKAYARANMKGIWAAALNPFRPDFSLNEEGLRANIRHWVDDLGIAGLFI 56          
BLAST of mRNA_P-wetherbeei_contig17344.2.1 vs. uniprot
Match: A0A7X2KCE5_9PROT (Dihydrodipicolinate synthase family protein n=1 Tax=Alphaproteobacteria bacterium HT1-32 TaxID=2665153 RepID=A0A7X2KCE5_9PROT)

HSP 1 Score: 93.2 bits (230), Expect = 2.000e-21
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 1
Query:    1 MKYSRLDAKEYARANMKGIWAASLMPFRPDLSMDEAGWRGNLRHWVDDLGIDGVFV 168
            MKYSR DAK+YAR NM GIWAA+L PF PD SM+EAG R NLRHW+DDL IDG F+
Sbjct:    1 MKYSRNDAKDYARENMTGIWAAALNPFNPDSSMNEAGLRANLRHWIDDLEIDGFFI 56          
BLAST of mRNA_P-wetherbeei_contig17344.2.1 vs. uniprot
Match: A0A381WSL2_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381WSL2_9ZZZZ)

HSP 1 Score: 93.2 bits (230), Expect = 2.000e-21
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 1
Query:    1 MKYSRLDAKEYARANMKGIWAASLMPFRPDLSMDEAGWRGNLRHWVDDLGIDGVFV 168
            MKY++LDAK+YAR NM+GIWAA L PFR D S+DE G R N+RHWVDDLGI G+F+
Sbjct:    1 MKYTKLDAKDYARENMRGIWAAVLNPFREDFSLDEEGLRSNIRHWVDDLGIQGLFI 56          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17344.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L5FNH0_9HYPH3.680e-2578.57Dihydrodipicolinate synthase family protein n=1 Ta... [more]
A0A6N9BGU6_9PROT1.860e-2371.43Dihydrodipicolinate synthase family protein (Fragm... [more]
A0A4Q3JB98_9HYPH2.260e-2267.86Dihydrodipicolinate synthase family protein (Fragm... [more]
A0A849G9A5_9GAMM3.240e-2266.07Dihydrodipicolinate synthase family protein (Fragm... [more]
UPI000D6996791.030e-2171.43dihydrodipicolinate synthase family protein n=1 Ta... [more]
A0A285PER3_9HYPH1.430e-2171.434-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=... [more]
UPI001489FCA31.430e-2169.64dihydrodipicolinate synthase family protein n=1 Ta... [more]
A0A1H2HIV3_9HYPH2.000e-2171.434-hydroxy-tetrahydrodipicolinate synthase n=5 Tax=... [more]
A0A7X2KCE5_9PROT2.000e-2173.21Dihydrodipicolinate synthase family protein n=1 Ta... [more]
A0A381WSL2_9ZZZZ2.000e-2169.64Uncharacterized protein n=1 Tax=marine metagenome ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17344contigP-wetherbeei_contig17344:1270..1437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1121271.AUCM01000005_gene784
PFAMsDHDPS
Model size168
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC03062,RC03063
KEGG koko:K01714
KEGG ReactionR10147
KEGG Pathwayko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230
KEGG ModuleM00016,M00525,M00526,M00527
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue3.45e-21
EggNOG OGsCOG0329@1|root,COG0329@2|Bacteria,1R73B@1224|Proteobacteria,2U0S8@28211|Alphaproteobacteria
EC4.3.3.7
DescriptionBelongs to the DapA family
Cds size168
COG categoryEM
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186114.9146922-CDS-P-wetherbeei_contig17344:1269..14371683186114.9146922-CDS-P-wetherbeei_contig17344:1269..1437Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17344 1270..1437 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17344.2.1prot_P-wetherbeei_contig17344.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17344 1270..1437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17344.2.1

>prot_P-wetherbeei_contig17344.2.1 ID=prot_P-wetherbeei_contig17344.2.1|Name=mRNA_P-wetherbeei_contig17344.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=56bp
MKYSRLDAKEYARANMKGIWAASLMPFRPDLSMDEAGWRGNLRHWVDDLG
IDGVFV
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mRNA from alignment at P-wetherbeei_contig17344:1270..1437+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17344.2.1 ID=mRNA_P-wetherbeei_contig17344.2.1|Name=mRNA_P-wetherbeei_contig17344.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=168bp|location=Sequence derived from alignment at P-wetherbeei_contig17344:1270..1437+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAATACAGCCGGCTCGATGCCAAGGAATACGCCCGCGCCAACATGAA GGGCATCTGGGCGGCGTCGCTGATGCCGTTCCGCCCCGACCTGTCGATGG ACGAGGCGGGATGGCGCGGCAACCTGCGGCACTGGGTCGACGACCTCGGC ATCGACGGGGTGTTCGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17344:1270..1437+

>mRNA_P-wetherbeei_contig17344.2.1 ID=mRNA_P-wetherbeei_contig17344.2.1|Name=mRNA_P-wetherbeei_contig17344.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=168bp|location=Sequence derived from alignment at P-wetherbeei_contig17344:1270..1437+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAATACAGCCGGCTCGATGCCAAGGAATACGCCCGCGCCAACATGAA
GGGCATCTGGGCGGCGTCGCTGATGCCGTTCCGCCCCGACCTGTCGATGG
ACGAGGCGGGATGGCGCGGCAACCTGCGGCACTGGGTCGACGACCTCGGC
ATCGACGGGGTGTTCGTC
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