mRNA_P-wetherbeei_contig17335.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17335.1.1
Unique NamemRNA_P-wetherbeei_contig17335.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17335.1.1 vs. uniprot
Match: A0A836C8C9_9STRA (Protoporphyrinogen oxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8C9_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.640e-38
Identity = 69/93 (74.19%), Postives = 78/93 (83.87%), Query Frame = 1 
Query:    4 VGSFVRVSMDPNRFLWEEGPNTFQPTPYIMRTLVDLGLKEELVLADASLPRFVFWDGNLYPLPSTPGDIIGEFNLLSWPGKIRAGIGAIGLVV 282
            VG  V +S   + FLWEEGPNTFQPTPYIMRT VDLGLK++LVLADASL RFV+WDG LYPLP++  DI+  F LLSWPGKIRAGIGAIGLV+
Sbjct:   44 VGGNV-ISKQRDGFLWEEGPNTFQPTPYIMRTAVDLGLKDDLVLADASLSRFVYWDGQLYPLPASLQDIVNNFWLLSWPGKIRAGIGAIGLVL 135
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BLAST of mRNA_P-wetherbeei_contig17335.1.1 vs. uniprot
Match: D7FU83_ECTSI (Protoporphyrinogen oxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU83_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 8.730e-37
Identity = 67/94 (71.28%), Postives = 79/94 (84.04%), Query Frame = 1 
Query:    1 RVGSFVRVSMDPNRFLWEEGPNTFQPTPYIMRTLVDLGLKEELVLADASLPRFVFWDGNLYPLPSTPGDIIGEFNLLSWPGKIRAGIGAIGLVV 282
            +VG  V +S   + FLWEEGPN+FQPTPYIMRT VDLGLKE+LVLAD +LPRFVFW+G L+PLPS+   II +F LLSWPGKIRAG+GAIGLV+
Sbjct:   94 QVGGNV-ISKKEDGFLWEEGPNSFQPTPYIMRTTVDLGLKEDLVLADPTLPRFVFWEGGLFPLPSSLQSIITDFWLLSWPGKIRAGLGAIGLVL 186
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BLAST of mRNA_P-wetherbeei_contig17335.1.1 vs. uniprot
Match: A0A7S4DP84_9EUKA (Protoporphyrinogen oxidase (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DP84_9EUKA)

HSP 1 Score: 124 bits (310), Expect = 3.270e-31
Identity = 56/96 (58.33%), Postives = 69/96 (71.88%), Query Frame = 1 
Query:    1 RVGSFVRVSMDPNRFLWEEGPNTFQPTPYIMRTLVDLGLKEELVLADASLPRFVFWDGNLYPLPSTPGDIIGEFNLLSWPGKIRAGIGAIGLVVSY 288
            RVG  +    +   FLWEEGPNTFQPTP I+R   DLG+ ++LVLAD SLPR VFWD  L+PLP +P D +  F L+SWPGKIRAG+GA+G+   Y
Sbjct:  155 RVGGNLISRKNEEGFLWEEGPNTFQPTPQILRFAHDLGIADDLVLADPSLPRLVFWDDKLWPLPGSPQDAVFNFGLMSWPGKIRAGLGALGIPPFY 250
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BLAST of mRNA_P-wetherbeei_contig17335.1.1 vs. uniprot
Match: A0A7S1NSC8_9EUGL (Protoporphyrinogen oxidase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NSC8_9EUGL)

HSP 1 Score: 119 bits (298), Expect = 2.780e-29
Identity = 58/102 (56.86%), Postives = 80/102 (78.43%), Query Frame = 1 
Query:    1 RVGSFVRVSMDPNRFLWEEGPNTFQPTPYIMRTLVDLGLKEELVLADASLPRFVFWDG--------NLYPLPST-PGDIIGEFNLLSWPGKIRAGIGAIGLV 279
            +VG  V +S + + F+WEEGPN+FQPTP I RT+ +LG+ ++LVLADASLPRFV+W+G        NL+ LP+  PGD++ +FNLL+WPGKIRAG+GA+GL+
Sbjct:  213 QVGGNV-ISKEKDGFVWEEGPNSFQPTPAICRTVYELGITDQLVLADASLPRFVYWEGQGAGQKLANLHALPTNLPGDLL-DFNLLTWPGKIRAGLGAVGLI 312
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BLAST of mRNA_P-wetherbeei_contig17335.1.1 vs. uniprot
Match: A0A7S3ELQ9_9RHOD (Protoporphyrinogen oxidase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ELQ9_9RHOD)

HSP 1 Score: 113 bits (282), Expect = 9.780e-29
Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:    1 RVGSFVRVSMDPNRFLWEEGPNTFQPTPYIMRTLVDLGLKEELVLADASLPRFVFWDGNLYPLPSTPGDIIGEFNLLSWPGKIRAGIGAIGLVV 282
            R+G  V ++   N + WEEGPNTFQP P+IMR  VDLGLK+++VLAD +LPRFVFW+G L+ LP  P DI  +F LLS  G IRAG+GAIGLV+
Sbjct:   78 RIGGNV-ITKQENGYTWEEGPNTFQPAPHIMRMAVDLGLKDDVVLADHTLPRFVFWNGKLFALPLGPSDI-PKFRLLSPWGFIRAGLGAIGLVM 169
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BLAST of mRNA_P-wetherbeei_contig17335.1.1 vs. uniprot
Match: A0A7S0H584_9EUKA (Protoporphyrinogen oxidase n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H584_9EUKA)

HSP 1 Score: 116 bits (290), Expect = 2.320e-28
Identity = 53/96 (55.21%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:    1 RVGSFVRVSMDPNRFLWEEGPNTFQPTPYIMRTLVDLGLKEELVLADASLPRFVFWDGNLYPLPSTPGDIIGEFNLLSWPGKIRAGIGAIGLVVSY 288
            RVG  +    +   F WEEGPNTFQPTP IMR   DLG+  +LV A+ +LPR VFWD  L+PLP  P D +  F L+SWPGKIRAG+GA+G+   Y
Sbjct:   57 RVGGNLISKKNEEGFQWEEGPNTFQPTPQIMRFAHDLGIANDLVFANPTLPRLVFWDDKLWPLPMKPQDAVFNFGLISWPGKIRAGLGAMGIPPFY 152
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BLAST of mRNA_P-wetherbeei_contig17335.1.1 vs. uniprot
Match: A0A1Z5JRE2_FISSO (Protoporphyrinogen oxidase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JRE2_FISSO)

HSP 1 Score: 115 bits (288), Expect = 4.600e-28
Identity = 56/101 (55.45%), Postives = 74/101 (73.27%), Query Frame = 1 
Query:    4 VGSFVRVSMDPNRFLWEEGPNTFQPTPYIMRTLVDLGLKEELVLADASLPRFVFWDG--------NLYPLPST-PGDIIGEFNLLSWPGKIRAGIGAIGLV 279
            VG  +    +   F+WEEGPN+FQPTPYI R + +LGL ++LVLAD SLPRFV+W G        NL+ LP+  PGD++ +FNLL+WPGKIRAG+GA+GL+
Sbjct:   79 VGGNLISKSNEQGFVWEEGPNSFQPTPYICRIVHELGLSDQLVLADGSLPRFVYWQGGGAGDKLANLHALPTNLPGDLL-DFNLLTWPGKIRAGLGAMGLI 178
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BLAST of mRNA_P-wetherbeei_contig17335.1.1 vs. uniprot
Match: B7GDU9_PHATC (Protoporphyrinogen oxidase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GDU9_PHATC)

HSP 1 Score: 114 bits (286), Expect = 7.490e-28
Identity = 56/101 (55.45%), Postives = 74/101 (73.27%), Query Frame = 1 
Query:    4 VGSFVRVSMDPNRFLWEEGPNTFQPTPYIMRTLVDLGLKEELVLADASLPRFVFWDG--------NLYPLPST-PGDIIGEFNLLSWPGKIRAGIGAIGLV 279
            VG  +    +   F+WEEGPN+FQPTPYI R + +LG+ ++LVLAD SLPRFV+W G        NL+ LP+  PGD++ +FNLL+WPGKIRAG+GAIGL+
Sbjct:   83 VGGNLISKENEEGFVWEEGPNSFQPTPYISRLVHELGITKDLVLADGSLPRFVYWQGEGAGAKLANLHALPTNLPGDLL-DFNLLTWPGKIRAGLGAIGLI 182
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BLAST of mRNA_P-wetherbeei_contig17335.1.1 vs. uniprot
Match: A0A5J4YXT7_PORPP (Protoporphyrinogen oxidase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YXT7_PORPP)

HSP 1 Score: 114 bits (286), Expect = 8.470e-28
Identity = 59/94 (62.77%), Postives = 69/94 (73.40%), Query Frame = 1 
Query:    1 RVGSFVRVSMDPNRFLWEEGPNTFQPTPYIMRTLVDLGLKEELVLADASLPRFVFWDGNLYPLPSTPGDIIGEFNLLSWPGKIRAGIGAIGLVV 282
            RVG  V  S + N + WEEGPNTFQP P+IMR  VDLGLK+ELVLAD +LPRFV+WDG L+ LP  P DI   F LLS  G IRAG+GA+G V+
Sbjct:   99 RVGGNV-TSRNENGYTWEEGPNTFQPAPHIMRIAVDLGLKDELVLADHTLPRFVYWDGKLFALPMGPQDI-PNFRLLSPLGAIRAGLGAMGFVL 190
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BLAST of mRNA_P-wetherbeei_contig17335.1.1 vs. uniprot
Match: A0A7S0XB76_9STRA (Protoporphyrinogen oxidase n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XB76_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.260e-27
Identity = 51/86 (59.30%), Postives = 65/86 (75.58%), Query Frame = 1 
Query:   22 VSMDPNRFLWEEGPNTFQPTPYIMRTLVDLGLKEELVLADASLPRFVFWDGNLYPLPSTPGDIIGEFNLLSWPGKIRAGIGAIGLV 279
            +S   + FLWEEGPN+FQP P I+R   DLG+ +ELVLAD +LPRFV+W+G LY LPS P D +  F LL+WPGKIRAG+G +G +
Sbjct:   40 ISKKEDGFLWEEGPNSFQPNPAILRFAKDLGVIDELVLADPTLPRFVYWEGELYALPSKPTDAV-TFGLLTWPGKIRAGLGVLGFI 124
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17335.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8C9_9STRA2.640e-3874.19Protoporphyrinogen oxidase n=1 Tax=Tribonema minus... [more]
D7FU83_ECTSI8.730e-3771.28Protoporphyrinogen oxidase n=2 Tax=Ectocarpus TaxI... [more]
A0A7S4DP84_9EUKA3.270e-3158.33Protoporphyrinogen oxidase (Fragment) n=1 Tax=Loth... [more]
A0A7S1NSC8_9EUGL2.780e-2956.86Protoporphyrinogen oxidase n=1 Tax=Eutreptiella gy... [more]
A0A7S3ELQ9_9RHOD9.780e-2960.64Protoporphyrinogen oxidase n=1 Tax=Rhodosorus mari... [more]
A0A7S0H584_9EUKA2.320e-2855.21Protoporphyrinogen oxidase n=1 Tax=Amorphochlora a... [more]
A0A1Z5JRE2_FISSO4.600e-2855.45Protoporphyrinogen oxidase n=2 Tax=Fistulifera sol... [more]
B7GDU9_PHATC7.490e-2855.45Protoporphyrinogen oxidase n=1 Tax=Phaeodactylum t... [more]
A0A5J4YXT7_PORPP8.470e-2862.77Protoporphyrinogen oxidase n=1 Tax=Porphyridium pu... [more]
A0A7S0XB76_9STRA1.260e-2759.30Protoporphyrinogen oxidase n=1 Tax=Chromulina nebu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17335contigP-wetherbeei_contig17335:390..1079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FU83
PFAMsAmino_oxidase,NAD_binding_8
Model size291
Max annot lvl2759|Eukaryota
KEGG rclassRC00885
KEGG koko:K00231
KEGG ReactionR03222,R04178
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
KEGG ModuleM00121
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004729,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0006928,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016627,GO:0016634,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0040011,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0048870,GO:0051179,GO:0051186,GO:0051188,GO:0051674,GO:0055114,GO:0070818,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Exons2
Evalue5.1e-37
EggNOG OGsCOG1232@1|root,KOG1276@2759|Eukaryota
EC1.3.3.15,1.3.3.4
DescriptionCatalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
Cds size264
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186114.54469-CDS-P-wetherbeei_contig17335:389..5601683186114.54469-CDS-P-wetherbeei_contig17335:389..560Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17335 390..560 -
1683186114.5561018-CDS-P-wetherbeei_contig17335:959..10521683186114.5561018-CDS-P-wetherbeei_contig17335:959..1052Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17335 960..1052 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186114.5649612-UTR-P-wetherbeei_contig17335:1052..10791683186114.5649612-UTR-P-wetherbeei_contig17335:1052..1079Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17335 1053..1079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17335.1.1prot_P-wetherbeei_contig17335.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17335 390..1052 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17335.1.1

>prot_P-wetherbeei_contig17335.1.1 ID=prot_P-wetherbeei_contig17335.1.1|Name=mRNA_P-wetherbeei_contig17335.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=88bp
MDPNRFLWEEGPNTFQPTPYIMRTLVDLGLKEELVLADASLPRFVFWDGN
LYPLPSTPGDIIGEFNLLSWPGKIRAGIGAIGLVVSY*
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mRNA from alignment at P-wetherbeei_contig17335:390..1079-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17335.1.1 ID=mRNA_P-wetherbeei_contig17335.1.1|Name=mRNA_P-wetherbeei_contig17335.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=690bp|location=Sequence derived from alignment at P-wetherbeei_contig17335:390..1079- (Phaeothamnion wetherbeei SAG_119_79)
CGGGTCGGATCGTTCGTCCGGGTGTCAATGGATCCAAACAGGTTCCTGTG
GGAGGAGGGCCCCAATACGTTCCAGCCGACGCCGTACATAATGCGGACCC
TGGTTGACCTCGGACTCAAGGTGCGTTTCTAGGTGTTTTGACTTTTTCTT
GCCCCTCCGTTTCTTCTCTCATTTCCTTCGGATCGTGCTCTTTCTGGTTC
TTCAAAAGTCTCCAGTTCGCTTCAGAAATCCTCTGACGGCTCGATGGATT
GGTGGGGGCTTGGCTTGAGCCTTGTCCCCGCGGCGTCTTCTTTTTTCTTT
CTTTCGTTCTTTCCTGTTTTCCCGTCGTCTTCTTTCATCTTCGTCGGTCC
GCATCTTGTACCCTTCCGTCTCAATGTCTTGTTCTCTCCTTCACGCTGCA
TTTTCCTCTTCGTTGTCTTGCTCTTCCCCGGATCGCCCCTTTCTCCAACC
CTGCTTGGGAACCTCCGGCATCTCGGTCGGCATATCTGCTTTCTTCCCGC
ACATCTGTTGTGGCGGCAGGAGGAGCTCGTGCTGGCGGACGCCTCCCTCC
CGCGCTTCGTCTTCTGGGACGGCAACCTCTACCCGCTGCCCTCCACACCC
GGCGACATCATCGGAGAGTTCAACCTCCTCTCGTGGCCCGGAAAGATCCG
CGCCGGCATCGGCGCCATCGGACTTGTGGTGAGTTACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17335:390..1079-

>mRNA_P-wetherbeei_contig17335.1.1 ID=mRNA_P-wetherbeei_contig17335.1.1|Name=mRNA_P-wetherbeei_contig17335.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig17335:390..1079- (Phaeothamnion wetherbeei SAG_119_79)
ATGGATCCAAACAGGTTCCTGTGGGAGGAGGGCCCCAATACGTTCCAGCC
GACGCCGTACATAATGCGGACCCTGGTTGACCTCGGACTCAAGGAGGAGC
TCGTGCTGGCGGACGCCTCCCTCCCGCGCTTCGTCTTCTGGGACGGCAAC
CTCTACCCGCTGCCCTCCACACCCGGCGACATCATCGGAGAGTTCAACCT
CCTCTCGTGGCCCGGAAAGATCCGCGCCGGCATCGGCGCCATCGGACTTG
TGGTGAGTTACTGA
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