mRNA_P-wetherbeei_contig17332.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17332.1.1
Unique NamemRNA_P-wetherbeei_contig17332.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17332.1.1 vs. uniprot
Match: A0A1Z5JKK0_FISSO (Small subunit ribosomal protein S15 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKK0_FISSO)

HSP 1 Score: 96.3 bits (238), Expect = 4.730e-22
Identity = 52/102 (50.98%), Postives = 68/102 (66.67%), Query Frame = 1
Query:   43 SPPVQRVLSLENASTWDRMAADKKALMSQFMTRPEDTGASDVQIAALTVRITYATNHMGRNHKDNRTKRGLEALVQRRRKLLIYLKRTDFPRYRDVVMRLGL 348
            S  VQ++  L+NAS  +R+ + K+ +M  F  RP DTG+S VQIAAL+ RI     HM ++ KD  +KRG+EAL  RRRK+L YL+R DF  YR VV  LGL
Sbjct:  139 SERVQKLFDLQNASQMERIKSQKQKVMQIFQYRPGDTGSSAVQIAALSTRIQQMQAHMTKHKKDKHSKRGMEALFSRRRKMLDYLERKDFESYRRVVKALGL 240          
BLAST of mRNA_P-wetherbeei_contig17332.1.1 vs. uniprot
Match: A0A2S5QX86_9PROT (30S ribosomal protein S15 n=1 Tax=Methylotenera sp. TaxID=2051956 RepID=A0A2S5QX86_9PROT)

HSP 1 Score: 90.1 bits (222), Expect = 2.740e-21
Identity = 45/84 (53.57%), Postives = 60/84 (71.43%), Query Frame = 1
Query:  100 AADKKALMSQFMTRPEDTGASDVQIAALTVRITYATNHMGRNHKDNRTKRGLEALVQRRRKLLIYLKRTDFPRYRDVVMRLGLR 351
            AAD+  ++S+F T P+DTG+ +VQ+A LT RI Y T H   N KDN ++RGL ALV +RR+LL YLK  D  RY+ ++ RLGLR
Sbjct:    5 AADRAKIVSEFQTAPKDTGSPEVQVALLTSRIAYLTEHFKSNKKDNHSRRGLLALVSQRRRLLDYLKSKDVTRYQALIGRLGLR 88          
BLAST of mRNA_P-wetherbeei_contig17332.1.1 vs. uniprot
Match: A0A7S2FKX4_9STRA (30S ribosomal protein S15 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FKX4_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.080e-20
Identity = 52/114 (45.61%), Postives = 68/114 (59.65%), Query Frame = 1
Query:    7 KYFISNERAAATSPPVQRVLSLENASTWDRMAADKKALMSQFMTRPEDTGASDVQIAALTVRITYATNHMGRNHKDNRTKRGLEALVQRRRKLLIYLKRTDFPRYRDVVMRLGL 348
            ++ I  E     S  V+RVLS+ NAS  +   A     +  F +RP DTG++ VQ+A LTV+I     H+ ++ KDN +KRGL  LV +RRKLL YLKRTDF  YR  V  L L
Sbjct:   19 RFGIKPETVPEVSEAVRRVLSMANASNAEVTQAKVARAIEAFASRPGDTGSTPVQVAVLTVKIENVRAHLKQHVKDNPSKRGLVMLVNKRRKLLKYLKRTDFDSYRRTVYSLNL 132          
BLAST of mRNA_P-wetherbeei_contig17332.1.1 vs. uniprot
Match: A0A2N2S9F8_9PROT (30S ribosomal protein S15 n=3 Tax=Betaproteobacteria TaxID=28216 RepID=A0A2N2S9F8_9PROT)

HSP 1 Score: 87.0 bits (214), Expect = 4.470e-20
Identity = 42/84 (50.00%), Postives = 60/84 (71.43%), Query Frame = 1
Query:  100 AADKKALMSQFMTRPEDTGASDVQIAALTVRITYATNHMGRNHKDNRTKRGLEALVQRRRKLLIYLKRTDFPRYRDVVMRLGLR 351
            AAD+  ++S++   P+DTG+ +VQ+A LT RITY T H   N KD+ ++RGL A+V +RRKLL YLKR    RY+ ++ RLG+R
Sbjct:    5 AADRAKIVSEYQQAPKDTGSPEVQVALLTSRITYLTEHFKSNKKDHHSRRGLLAMVSQRRKLLDYLKRNSVERYQTLIGRLGIR 88          
BLAST of mRNA_P-wetherbeei_contig17332.1.1 vs. uniprot
Match: H3HBC0_PHYRM (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=H3HBC0_PHYRM)

HSP 1 Score: 87.8 bits (216), Expect = 1.560e-19
Identity = 49/111 (44.14%), Postives = 70/111 (63.06%), Query Frame = 1
Query:   19 SNERAAATSPPVQRVLSLENASTWDRMAADKKALMSQFMTRPEDTGASDVQIAALTVRITYATNHMGRNHKDNRTKRGLEALVQRRRKLLIYLKRTDFPRYRDVVMRLGLR 351
            ++E    T   ++ VLSL NAS  +   A   A +  F   P DTG+S+VQ+A LT +I  +T H   + KD+ ++RGL A+V++RRKLL YL+R D  +YR+VV  LGLR
Sbjct:   51 ADEEEEKTLMQLKAVLSLRNASQHELNKAQVAAAIDTFQRFPGDTGSSEVQVAVLTQKILRSTTHAQGHKKDHHSRRGLIAMVEKRRKLLKYLRRKDLHKYREVVAALGLR 161          
BLAST of mRNA_P-wetherbeei_contig17332.1.1 vs. uniprot
Match: A0A426WGK0_9GAMM (30S ribosomal protein S15 n=6 Tax=Bacteria TaxID=2 RepID=A0A426WGK0_9GAMM)

HSP 1 Score: 85.5 bits (210), Expect = 1.810e-19
Identity = 42/84 (50.00%), Postives = 59/84 (70.24%), Query Frame = 1
Query:  100 AADKKALMSQFMTRPEDTGASDVQIAALTVRITYATNHMGRNHKDNRTKRGLEALVQRRRKLLIYLKRTDFPRYRDVVMRLGLR 351
            A DKKA++ ++   P DTG+ +VQ+A LT RITY T H  ++ +D+ +++GL  +V  RRKLL YLK  D  RYRD++ RLGLR
Sbjct:    5 AEDKKAIVEEYKRGPGDTGSPEVQVALLTSRITYLTEHFKQHKQDHHSRQGLVRMVNSRRKLLDYLKSKDAERYRDLISRLGLR 88          
BLAST of mRNA_P-wetherbeei_contig17332.1.1 vs. uniprot
Match: A0A3M6VF71_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VF71_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.110e-19
Identity = 49/110 (44.55%), Postives = 69/110 (62.73%), Query Frame = 1
Query:   22 NERAAATSPPVQRVLSLENASTWDRMAADKKALMSQFMTRPEDTGASDVQIAALTVRITYATNHMGRNHKDNRTKRGLEALVQRRRKLLIYLKRTDFPRYRDVVMRLGLR 351
            +E+  A    ++ VLSL NAS  +   A     +  F   P DTG+S+VQIA LT +I  +T H   + KD+ ++RGL A+V++RRKLL YL+R D  ++RDVV  LGLR
Sbjct:   50 DEKEEAAFEQLKAVLSLRNASQHELNKAQVATAIETFQRFPGDTGSSEVQIAVLTQKILRSTTHAQGHKKDHHSRRGLIAMVEKRRKLLKYLRRKDLHKFRDVVAALGLR 159          
BLAST of mRNA_P-wetherbeei_contig17332.1.1 vs. uniprot
Match: A0A225W7Y7_9STRA (Ribosomal protein S15 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W7Y7_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.110e-19
Identity = 49/110 (44.55%), Postives = 68/110 (61.82%), Query Frame = 1
Query:   22 NERAAATSPPVQRVLSLENASTWDRMAADKKALMSQFMTRPEDTGASDVQIAALTVRITYATNHMGRNHKDNRTKRGLEALVQRRRKLLIYLKRTDFPRYRDVVMRLGLR 351
            +E    T   ++ VLSL NAS  +   A     +  F   P DTG+S+VQ+A LT +I   T H  +N KD+ ++RGL A+V++RRKLL YL+R D  +YR+VV  LGLR
Sbjct:   50 DEAEEQTLNQLKAVLSLRNASQHELNKAQVATAIQTFQRFPGDTGSSEVQVAVLTQKILRCTAHAQQNKKDHHSRRGLIAMVEKRRKLLKYLRRKDLHKYREVVAALGLR 159          
BLAST of mRNA_P-wetherbeei_contig17332.1.1 vs. uniprot
Match: A0A8F7ZIC9_9HYPH (30S ribosomal protein S15 n=1 Tax=Methylovirgula sp. HY1 TaxID=2822761 RepID=A0A8F7ZIC9_9HYPH)

HSP 1 Score: 85.1 bits (209), Expect = 2.560e-19
Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = 1
Query:  100 AADKKALMSQFMTRPEDTGASDVQIAALTVRITYATNHMGRNHKDNRTKRGLEALVQRRRKLLIYLKRTDFPRYRDVVMRLGLR 351
            A  K+AL+  +   P DTG+ +VQ+A LT RITY T H   + KDN ++RGL  LV +RR+LL Y+KR D PRYR ++ RLG+R
Sbjct:    5 AERKQALIKDYANAPGDTGSPEVQVAILTERITYLTEHFKTHIKDNHSRRGLLKLVSQRRQLLDYVKRKDEPRYRSLIERLGIR 88          
BLAST of mRNA_P-wetherbeei_contig17332.1.1 vs. uniprot
Match: A0A348XL47_9BACT (30S ribosomal protein S15 n=1 Tax=Lentisphaeria bacterium TaxID=2053569 RepID=A0A348XL47_9BACT)

HSP 1 Score: 85.1 bits (209), Expect = 2.560e-19
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  109 KKALMSQFMTRPEDTGASDVQIAALTVRITYATNHMGRNHKDNRTKRGLEALVQRRRKLLIYLKRTDFPRYRDVVMRLGLR 351
            K  ++ ++  R  DTG+SDVQ+A LT RI   T HM  N KDN T+RGL+ LVQRR+K L YL RT   RYR+++ +LGLR
Sbjct:    8 KAEVIKEYALRGGDTGSSDVQVAVLTHRIKELTEHMKANKKDNHTRRGLQLLVQRRKKHLKYLSRTQHDRYRELIQKLGLR 88          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17332.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Z5JKK0_FISSO4.730e-2250.98Small subunit ribosomal protein S15 n=2 Tax=Fistul... [more]
A0A2S5QX86_9PROT2.740e-2153.5730S ribosomal protein S15 n=1 Tax=Methylotenera sp... [more]
A0A7S2FKX4_9STRA2.080e-2045.6130S ribosomal protein S15 n=1 Tax=Florenciella par... [more]
A0A2N2S9F8_9PROT4.470e-2050.0030S ribosomal protein S15 n=3 Tax=Betaproteobacter... [more]
H3HBC0_PHYRM1.560e-1944.14Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
A0A426WGK0_9GAMM1.810e-1950.0030S ribosomal protein S15 n=6 Tax=Bacteria TaxID=2... [more]
A0A3M6VF71_9STRA2.110e-1944.55Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A225W7Y7_9STRA2.110e-1944.55Ribosomal protein S15 n=1 Tax=Phytophthora megakar... [more]
A0A8F7ZIC9_9HYPH2.560e-1951.1930S ribosomal protein S15 n=1 Tax=Methylovirgula s... [more]
A0A348XL47_9BACT2.560e-1953.0930S ribosomal protein S15 n=1 Tax=Lentisphaeria ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17332contigP-wetherbeei_contig17332:858..1370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog4792.ETI54904
PFAMsRibosomal_S15
Model size360
Max annot lvl4776|Peronosporales
KEGG koko:K02956
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.66e-21
EggNOG OGsCOG0184@1|root,KOG2815@2759|Eukaryota,3QAWI@4776|Peronosporales
Ec32 ortholog descriptionS15/NS1, RNA-binding
Ec32 orthologEc-14_003560.1
DescriptionBelongs to the universal ribosomal protein uS15 family
Cds size360
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186114.4665499-CDS-P-wetherbeei_contig17332:857..10291683186114.4665499-CDS-P-wetherbeei_contig17332:857..1029Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17332 858..1029 +
1683186114.478691-CDS-P-wetherbeei_contig17332:1182..13701683186114.478691-CDS-P-wetherbeei_contig17332:1182..1370Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17332 1183..1370 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17332.1.1prot_P-wetherbeei_contig17332.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17332 858..1370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17332.1.1

>prot_P-wetherbeei_contig17332.1.1 ID=prot_P-wetherbeei_contig17332.1.1|Name=mRNA_P-wetherbeei_contig17332.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=120bp
SFKYFISNERAAATSPPVQRVLSLENASTWDRMAADKKALMSQFMTRPED
TGASDVQIAALTVRITYATNHMGRNHKDNRTKRGLEALVQRRRKLLIYLK
RTDFPRYRDVVMRLGLRPV*
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mRNA from alignment at P-wetherbeei_contig17332:858..1370+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17332.1.1 ID=mRNA_P-wetherbeei_contig17332.1.1|Name=mRNA_P-wetherbeei_contig17332.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig17332:858..1370+ (Phaeothamnion wetherbeei SAG_119_79)
AGCTTCAAGTACTTCATTTCGAACGAGCGCGCTGCGGCGACGTCGCCGCC CGTCCAGCGCGTGCTGTCGCTCGAAAATGCGAGCACCTGGGACCGCATGG CTGCCGACAAGAAGGCGCTGATGTCGCAGTTCATGACGCGGCCCGAGGAC ACCGGCGCGAGCGACGTGCAAAGTAAGCCGTATTGCAATGGTGTAAATGC TCTCCTTTGACTTTCATCACTGCTTACTTTCATTTTTTTACCCTCGTGGG TGCTTCTTTCTTTGCAAGTACACTAACCTGCTGTCTCGTTATGCAATGCT ATAAATTTGACTTCGTCGGTGGCAGTTGCGGCGCTCACCGTGCGCATCAC CTATGCGACGAACCACATGGGGCGCAACCACAAGGACAACCGCACCAAGC GCGGTCTCGAGGCATTGGTGCAGCGCCGGAGAAAGCTGCTCATCTACCTC AAGCGGACGGACTTCCCGCGGTACCGCGACGTCGTCATGCGCCTCGGGCT GCGGCCGGTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17332:858..1370+

>mRNA_P-wetherbeei_contig17332.1.1 ID=mRNA_P-wetherbeei_contig17332.1.1|Name=mRNA_P-wetherbeei_contig17332.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig17332:858..1370+ (Phaeothamnion wetherbeei SAG_119_79)
AGCTTCAAGTACTTCATTTCGAACGAGCGCGCTGCGGCGACGTCGCCGCC
CGTCCAGCGCGTGCTGTCGCTCGAAAATGCGAGCACCTGGGACCGCATGG
CTGCCGACAAGAAGGCGCTGATGTCGCAGTTCATGACGCGGCCCGAGGAC
ACCGGCGCGAGCGACGTGCAAATTGCGGCGCTCACCGTGCGCATCACCTA
TGCGACGAACCACATGGGGCGCAACCACAAGGACAACCGCACCAAGCGCG
GTCTCGAGGCATTGGTGCAGCGCCGGAGAAAGCTGCTCATCTACCTCAAG
CGGACGGACTTCCCGCGGTACCGCGACGTCGTCATGCGCCTCGGGCTGCG
GCCGGTCTGA
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