mRNA_P-wetherbeei_contig17330.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17330.1.1
Unique NamemRNA_P-wetherbeei_contig17330.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17330.1.1 vs. uniprot
Match: A0A6V1MI94_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1MI94_HETAK)

HSP 1 Score: 54.3 bits (129), Expect = 2.270e-6
Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:  151 PLSKPNFDVSGMNFIVTGGTGTLGKSIACSLSAHGAKGIILSGMAEE 291
            PLSKP+FDV+G NFIVTGG   LG++IA  L+A GA G++++  +EE
Sbjct:   58 PLSKPSFDVTGKNFIVTGGGQGLGRNIAECLAAQGAAGVLITCRSEE 104
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17330.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6V1MI94_HETAK2.270e-657.45Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17330contigP-wetherbeei_contig17330:345..993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LTE4
Preferred nameTR-1
PFAMsPex14_N,adh_short,adh_short_C2
Model size308
Max annot lvl2759|Eukaryota
KEGG rclassRC00144
KEGG koko:K08081
KEGG ReactionR02832
KEGG Pathwayko00960,ko01100,ko01110,map00960,map01100,map01110
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.3e-06
EggNOG OGsCOG1028@1|root,KOG0725@2759|Eukaryota
Ec32 ortholog descriptionShort-chain dehydrogenase/reductase SDR
Ec32 orthologEc-02_006020.1
EC1.1.1.206
Descriptionoxidation-reduction process
Cds size306
COG categoryIQ
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186114.4182403-CDS-P-wetherbeei_contig17330:345..4771683186114.4182403-CDS-P-wetherbeei_contig17330:345..477Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17330 346..477 -
1683186114.429977-CDS-P-wetherbeei_contig17330:722..7851683186114.429977-CDS-P-wetherbeei_contig17330:722..785Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17330 723..785 -
1683186114.4392679-CDS-P-wetherbeei_contig17330:882..9931683186114.4392679-CDS-P-wetherbeei_contig17330:882..993Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17330 883..993 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17330.1.1prot_P-wetherbeei_contig17330.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17330 346..993 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17330.1.1

>prot_P-wetherbeei_contig17330.1.1 ID=prot_P-wetherbeei_contig17330.1.1|Name=mRNA_P-wetherbeei_contig17330.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=102bp
LLNPSQAPNHKAHLQTNTVAHAAEAAEKTVEFALEKMPHEAGAHVAEDAP
PLSKPNFDVSGMNFIVTGGTGTLGKSIACSLSAHGAKGIILSGMAEEGKA
KE
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mRNA from alignment at P-wetherbeei_contig17330:345..993-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17330.1.1 ID=mRNA_P-wetherbeei_contig17330.1.1|Name=mRNA_P-wetherbeei_contig17330.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=649bp|location=Sequence derived from alignment at P-wetherbeei_contig17330:345..993- (Phaeothamnion wetherbeei SAG_119_79)
CTTCTCAATCCCTCTCAAGCCCCAAATCATAAGGCCCATCTCCAAACTAA
TACGGTAGCTCACGCAGCGGAAGCAGCGGAAAAAACTGTCGAATTCGCAC
TTGAGAAAATGGCAAGTTCCCCCCTCTCTCCTTCTTTTGAGCTGCCATGA
GCCTGCAGTTATCTCTTACGATGCCACCCTCTTCTCTCCACCGTCTTTCT
CTTTGCAGCCGCATGAAGCTGGAGCGCACGTGGCTGAGGACGCGCCGCCG
CTGTCCAAGCCCAACTTTGATGTCAGCTCCCGTCAATCCCAAGTTTCTGT
GACAATTAGGCCTCATTCTCGCCACCCCATTCTCTCTCTTGGATCGACTA
TCATCGTTCGACCTGATATCCCCTCTTACTGCTCTTGCTCCCGCCACCAC
CTCCTCTTGGCAACTCCCCCCCTTGGACCGGATGGCACCGTCATTGCCAA
ATGGACTCCCCCCCCCTGGCATGGCCACGTCATACTACACCGATGTGCAA
ATCGTCGTCGCACCAGGTCTCCGGGATGAACTTCATTGTGACGGGCGGCA
CCGGCACATTAGGGAAGTCGATCGCGTGCAGCCTCAGCGCCCATGGCGCC
AAGGGCATCATCTTGTCCGGCATGGCCGAGGAGGGCAAGGCCAAGGAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17330:345..993-

>mRNA_P-wetherbeei_contig17330.1.1 ID=mRNA_P-wetherbeei_contig17330.1.1|Name=mRNA_P-wetherbeei_contig17330.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig17330:345..993- (Phaeothamnion wetherbeei SAG_119_79)
CTTCTCAATCCCTCTCAAGCCCCAAATCATAAGGCCCATCTCCAAACTAA
TACGGTAGCTCACGCAGCGGAAGCAGCGGAAAAAACTGTCGAATTCGCAC
TTGAGAAAATGCCGCATGAAGCTGGAGCGCACGTGGCTGAGGACGCGCCG
CCGCTGTCCAAGCCCAACTTTGATGTCTCCGGGATGAACTTCATTGTGAC
GGGCGGCACCGGCACATTAGGGAAGTCGATCGCGTGCAGCCTCAGCGCCC
ATGGCGCCAAGGGCATCATCTTGTCCGGCATGGCCGAGGAGGGCAAGGCC
AAGGAG
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