mRNA_P-wetherbeei_contig17328.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17328.1.1
Unique NamemRNA_P-wetherbeei_contig17328.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17328.1.1 vs. uniprot
Match: A0A7S2BKS8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BKS8_9STRA)

HSP 1 Score: 139 bits (349), Expect = 4.160e-39
Identity = 64/119 (53.78%), Postives = 80/119 (67.23%), Query Frame = 1
Query:   25 REWYVTYVDILHRLGLWKAANELISQADDVAVRSMNRAGTGMHVNCSRCRNP-AGPGPR--CFKCAAVLSRCALCQGPVRGLYVWCLGCGHGGHLSHMQQWFGY-QSVCPTGCGHRCNF 369
            REWY  Y+ +LHRL LW  ANELI  + D A++ MN+  T ++ +C+ CR P  G      C KC A +S C LC  PVRG+YV C GCGHGGHL H+QQWF   Q+VC +GCGHRC+F
Sbjct:   69 REWYWWYIQVLHRLQLWLPANELIQGSTDPAIQEMNKKSTSIYASCANCRKPLVGMESHTWCAKCRAAVSTCVLCHLPVRGMYVVCPGCGHGGHLKHLQQWFSKGQNVCASGCGHRCDF 187          
BLAST of mRNA_P-wetherbeei_contig17328.1.1 vs. uniprot
Match: A0A7S3UQZ1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQZ1_HETAK)

HSP 1 Score: 143 bits (361), Expect = 9.630e-39
Identity = 65/124 (52.42%), Postives = 83/124 (66.94%), Query Frame = 1
Query:    1 LGLEPGLVREWYVTYVDILHRLGLWKAANELISQADDVAVRSMNRAGTGMHVNCSRCRNPAGPGPR---CFKCAAVLSRCALCQGPVRGLYVWCLGCGHGGHLSHMQQWFGYQSVCPTGCGHRC 363
            LG+    VREWY++Y++IL RLGL +AANELI+ + D  VR  N   T ++  C RCR P   GP+   C KC A    CALCQ P +GLY+ C GC HGGHL+ +Q+WF Y++ CP GCGHRC
Sbjct:  222 LGIPKKRVREWYLSYIEILQRLGLCQAANELINLSSDEVVRQQNAKSTTIYTACGRCRKPL-IGPQSFWCTKCKASAGLCALCQQPCKGLYISCPGCSHGGHLNCLQEWFSYETACPAGCGHRC 344          
BLAST of mRNA_P-wetherbeei_contig17328.1.1 vs. uniprot
Match: A0A4D9DDY3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DDY3_9STRA)

HSP 1 Score: 147 bits (370), Expect = 1.780e-38
Identity = 65/147 (44.22%), Postives = 87/147 (59.18%), Query Frame = 1
Query:    1 LGLEPGLVREWYVTYVDILHRLGLWKAANELISQADDVAVRSMNRAGTGMHVNCSRCRNPAGPG-------------------------PRCFKCAAVLSRCALCQGPVRGLYVWCLGCGHGGHLSHMQQWFGYQSVCPTGCGHRCN 366
            +G  P  VRE YV Y+++L RL LW+ ANEL+   +D  +  +  + T ++  C++CR P GPG                         P C KC A++S+CALC  PVRG+YVWC GCGHGGH+ H+Q+WF   S CPTGCGHRC+
Sbjct:  866 IGFRPERVREIYVGYLELLQRLTLWEVANELVEHLEDRYIHGLYASNTNIYAACAQCRRPLGPGSGGTKGVMPASSPGSATSSLTPTSSPWCGKCRALVSQCALCLQPVRGVYVWCPGCGHGGHIDHLQEWFAANSECPTGCGHRCH 1012          
BLAST of mRNA_P-wetherbeei_contig17328.1.1 vs. uniprot
Match: I2CPR4_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPR4_NANGC)

HSP 1 Score: 130 bits (327), Expect = 1.380e-36
Identity = 57/131 (43.51%), Postives = 77/131 (58.78%), Query Frame = 1
Query:   49 DILHRLGLWKAANELISQADDVAVRSMNRAGTGMHVNCSRCRNPAGPG-------------------------PRCFKCAAVLSRCALCQGPVRGLYVWCLGCGHGGHLSHMQQWFGYQSVCPTGCGHRCN 366
            ++L RL LW+ ANEL+   +D  +  +  + T ++  C++CR P GPG                         P C KC A++S+CALC  PVRG+YVWC GCGHGGH+ H+Q+WF   S CPTGCGHRC+
Sbjct:    1 ELLQRLTLWEVANELVEHLEDRYIHGLYASNTNIYAACAQCRRPLGPGSGGTKGVMSASSPGSATSSSTPTPSPWCGKCRALVSQCALCLQPVRGVYVWCPGCGHGGHIDHLQEWFAANSECPTGCGHRCH 131          
BLAST of mRNA_P-wetherbeei_contig17328.1.1 vs. uniprot
Match: A0A8B8EP92_CRAVI (GATOR complex protein WDR24 n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8EP92_CRAVI)

HSP 1 Score: 135 bits (340), Expect = 1.790e-34
Identity = 55/123 (44.72%), Postives = 78/123 (63.41%), Query Frame = 1
Query:    7 LEPGLVREWYVTYVDILHRLGLWKAANELISQADDVAVRSMNRAGTGMHVNCSRCRNPAGP-GPRCFKCAAVLSRCALCQGPVRGLYVWCLGCGHGGHLSHMQQWFGYQSVCPTGCGHRCNFV 372
            +EP +   W+++Y+D+L R  LW  AN++I       V S+N+  T +HVNC RC  P    G  C +C  V++ C++C  PV+GL++WC GC HGGHL H+++WFG    CPTGCGH C F 
Sbjct:  647 IEPEVQENWFLSYLDLLARFQLWTTANKIIKLCHLPIVSSLNQQSTRIHVNCHRCNRPLQRVGWLCDRCKLVINNCSVCHLPVKGLFIWCQGCSHGGHLGHIKEWFGVNRQCPTGCGHLCEFT 769          
BLAST of mRNA_P-wetherbeei_contig17328.1.1 vs. uniprot
Match: A0A2D4NKQ3_9SAUR (Uncharacterized protein (Fragment) n=2 Tax=Micrurus spixii TaxID=129469 RepID=A0A2D4NKQ3_9SAUR)

HSP 1 Score: 130 bits (328), Expect = 2.170e-34
Identity = 53/124 (42.74%), Postives = 76/124 (61.29%), Query Frame = 1
Query:    4 GLEPGLVREWYVTYVDILHRLGLWKAANELISQADDVAVRSMNRAGTGMHVNCSRCRNP-AGPGPRCFKCAAVLSRCALCQGPVRGLYVWCLGCGHGGHLSHMQQWFGYQSVCPTGCGHRCNFV 372
            G++      WY++Y+D+L R  LW  +NE+I  +   A+  +N+A T +H+NCS C+ P +  G  C +C    S CA+C   V+GL+VWC GC HGGHL H+ +W    S CPTGCGH C + 
Sbjct:  226 GIDDQTQEHWYMSYIDLLQRFQLWNISNEVIKLSTCRAIHCLNQASTTLHINCSSCKRPMSNKGWICDRCRQCASMCAVCHHVVKGLFVWCQGCSHGGHLQHIMKWLETSSHCPTGCGHLCEYT 349          
BLAST of mRNA_P-wetherbeei_contig17328.1.1 vs. uniprot
Match: K1PPL2_CRAGI (GATOR complex protein WDR24 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1PPL2_CRAGI)

HSP 1 Score: 134 bits (337), Expect = 4.560e-34
Identity = 54/123 (43.90%), Postives = 78/123 (63.41%), Query Frame = 1
Query:    7 LEPGLVREWYVTYVDILHRLGLWKAANELISQADDVAVRSMNRAGTGMHVNCSRCRNPAGP-GPRCFKCAAVLSRCALCQGPVRGLYVWCLGCGHGGHLSHMQQWFGYQSVCPTGCGHRCNFV 372
            +EP +   W+++Y+D+L R  LW  +N++I       V S+N+  T +HVNC RC  P    G  C +C  V++ C++C  PV+GL++WC GC HGGHL H+++WFG    CPTGCGH C F 
Sbjct:  642 IEPEVQENWFLSYLDLLARFQLWTTSNKIIKLCHLPLVSSLNQQSTRIHVNCHRCNRPLQRVGWLCDRCKLVINNCSVCHLPVKGLFIWCQGCSHGGHLGHIKEWFGENKQCPTGCGHLCEFT 764          
BLAST of mRNA_P-wetherbeei_contig17328.1.1 vs. uniprot
Match: A0A401RSQ4_CHIPU (Uncharacterized protein (Fragment) n=1 Tax=Chiloscyllium punctatum TaxID=137246 RepID=A0A401RSQ4_CHIPU)

HSP 1 Score: 128 bits (322), Expect = 7.460e-34
Identity = 52/123 (42.28%), Postives = 74/123 (60.16%), Query Frame = 1
Query:    7 LEPGLVREWYVTYVDILHRLGLWKAANELISQADDVAVRSMNRAGTGMHVNCSRCRNPAGP-GPRCFKCAAVLSRCALCQGPVRGLYVWCLGCGHGGHLSHMQQWFGYQSVCPTGCGHRCNFV 372
            ++      WY +Y+D+L R  LW  ANE+I  +   ++  +N+A T +HVNC+ C+ P    G  C +C    S CA+C   V+GL+VWC GC HGGHL H+  WF + + CPTGCGH C + 
Sbjct:  187 IDEQTQEHWYTSYIDLLQRFQLWNVANEVIKLSTCRSITCLNQASTTLHVNCNNCKRPMNTRGWMCERCRRGASICAVCHHAVKGLFVWCQGCTHGGHLQHLMDWFQFHTHCPTGCGHLCEYT 309          
BLAST of mRNA_P-wetherbeei_contig17328.1.1 vs. uniprot
Match: A0A6P9BXT2_PANGU (GATOR complex protein WDR24 n=3 Tax=Colubroidea TaxID=34989 RepID=A0A6P9BXT2_PANGU)

HSP 1 Score: 131 bits (330), Expect = 1.330e-33
Identity = 54/124 (43.55%), Postives = 76/124 (61.29%), Query Frame = 1
Query:    4 GLEPGLVREWYVTYVDILHRLGLWKAANELISQADDVAVRSMNRAGTGMHVNCSRCRNP-AGPGPRCFKCAAVLSRCALCQGPVRGLYVWCLGCGHGGHLSHMQQWFGYQSVCPTGCGHRCNFV 372
            G++      WY++Y+D+L R  LW  +NE+I  +   AV  +N+A T +H+NCS C+ P +  G  C +C    S CA+C   V+GL+VWC GC HGGHL H+ +W    S CPTGCGH C + 
Sbjct:  398 GIDDQTQEHWYMSYIDLLQRFQLWNISNEVIKLSTCRAVHCLNQASTTLHINCSNCKRPMSNKGWICDRCRQCASMCAVCHHVVKGLFVWCQGCSHGGHLQHIMKWLETSSHCPTGCGHLCEYT 521          
BLAST of mRNA_P-wetherbeei_contig17328.1.1 vs. uniprot
Match: A0A4W3HJU1_CALMI (Uncharacterized protein n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3HJU1_CALMI)

HSP 1 Score: 127 bits (318), Expect = 2.420e-33
Identity = 52/123 (42.28%), Postives = 74/123 (60.16%), Query Frame = 1
Query:    7 LEPGLVREWYVTYVDILHRLGLWKAANELISQADDVAVRSMNRAGTGMHVNCSRCRNPAGP-GPRCFKCAAVLSRCALCQGPVRGLYVWCLGCGHGGHLSHMQQWFGYQSVCPTGCGHRCNFV 372
            ++      WY++Y+D+L R  LW  ANE+I  +   +V  +N+A T +H+NCS CR P    G  C +C    S CA+C   V+GL+VWC  C HGGHL H+++WF   + CP GCGH C + 
Sbjct:  178 IDEQTQEHWYMSYIDLLQRFRLWNVANEVIKLSPCRSVSGLNQASTTLHINCSNCRRPMNRRGWVCERCRHRASSCAICHHAVKGLFVWCQACAHGGHLQHIREWFQLHAHCPAGCGHLCEYT 300          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17328.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2BKS8_9STRA4.160e-3953.78Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3UQZ1_HETAK9.630e-3952.42Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9DDY3_9STRA1.780e-3844.22Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
I2CPR4_NANGC1.380e-3643.51Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A8B8EP92_CRAVI1.790e-3444.72GATOR complex protein WDR24 n=1 Tax=Crassostrea vi... [more]
A0A2D4NKQ3_9SAUR2.170e-3442.74Uncharacterized protein (Fragment) n=2 Tax=Micruru... [more]
K1PPL2_CRAGI4.560e-3443.90GATOR complex protein WDR24 n=2 Tax=Crassostrea gi... [more]
A0A401RSQ4_CHIPU7.460e-3442.28Uncharacterized protein (Fragment) n=1 Tax=Chilosc... [more]
A0A6P9BXT2_PANGU1.330e-3343.55GATOR complex protein WDR24 n=3 Tax=Colubroidea Ta... [more]
A0A4W3HJU1_CALMI2.420e-3342.28Uncharacterized protein n=1 Tax=Callorhinchus mili... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17328contigP-wetherbeei_contig17328:37..764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog176946.XP_007434098.1
Preferred nameWDR24
PFAMsWD40,Zn_ribbon_17
Model size372
Max annot lvl33208|Metazoa
KEGG koko:K20408
KEGG Pathwayko04150,map04150
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0001558,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005767,GO:0005773,GO:0005774,GO:0005776,GO:0006873,GO:0006885,GO:0006950,GO:0006996,GO:0007033,GO:0007035,GO:0007040,GO:0007042,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010506,GO:0010508,GO:0010646,GO:0010647,GO:0016020,GO:0016043,GO:0016239,GO:0016241,GO:0019222,GO:0019725,GO:0023051,GO:0023056,GO:0030003,GO:0030004,GO:0030307,GO:0030641,GO:0031090,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031667,GO:0031668,GO:0031669,GO:0032006,GO:0032008,GO:0032991,GO:0033554,GO:0034198,GO:0035751,GO:0035859,GO:0040008,GO:0042592,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044754,GO:0045851,GO:0045927,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051128,GO:0051452,GO:0051453,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0061700,GO:0065007,GO:0065008,GO:0071496,GO:0071840,GO:0080171,GO:0098588,GO:0098771,GO:0098805,GO:0098852,GO:1902531,GO:1902533,GO:1903432,GO:1904263,GO:1990928
Exons2
Evalue9.34e-34
EggNOG OGsKOG0269@1|root,KOG0269@2759|Eukaryota,38HMY@33154|Opisthokonta,3BKC0@33208|Metazoa,3CRDD@33213|Bilateria,489RD@7711|Chordata,491RF@7742|Vertebrata
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_005460.1
DescriptionWD repeat-containing protein 24
Cds size372
COG categoryS
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186114.2151096-CDS-P-wetherbeei_contig17328:36..1141683186114.2151096-CDS-P-wetherbeei_contig17328:36..114Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17328 37..114 +
1683186114.2251318-CDS-P-wetherbeei_contig17328:470..7641683186114.2251318-CDS-P-wetherbeei_contig17328:470..764Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17328 471..764 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17328.1.1prot_P-wetherbeei_contig17328.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17328 37..764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17328.1.1

>prot_P-wetherbeei_contig17328.1.1 ID=prot_P-wetherbeei_contig17328.1.1|Name=mRNA_P-wetherbeei_contig17328.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=124bp
LGLEPGLVREWYVTYVDILHRLGLWKAANELISQADDVAVRSMNRAGTGM
HVNCSRCRNPAGPGPRCFKCAAVLSRCALCQGPVRGLYVWCLGCGHGGHL
SHMQQWFGYQSVCPTGCGHRCNFV
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mRNA from alignment at P-wetherbeei_contig17328:37..764+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17328.1.1 ID=mRNA_P-wetherbeei_contig17328.1.1|Name=mRNA_P-wetherbeei_contig17328.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=728bp|location=Sequence derived from alignment at P-wetherbeei_contig17328:37..764+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGGGCTGGAGCCGGGGCTGGTGCGTGAGTGGTACGTGACGTACGTTGA CATCCTGCACCGCCTCGGCCTCTGGAAGGTGAGCGAAGAGTCGGGGGGAG AAGGTTGATGGTTAGACGGATTGGCGAAGGCTGGCACGGCTTTTTGAGAC ACGGGTCGGAAGGAAGGAGGGGGAGTCTTGTTGCATCGCTCTTGCCGTTT AGTCCATTCCTTCTGCCGCTCGCTTTAAAGCTACGGTATCTGTCGGTTGC GGCGGAGGAGCATGCCATTGAAGATTAATATATCATACAGAAAGGAACAG GAGTTCTTTGGTTCTCTGCCGAACCGCCGTTTTCCCTATTGCCCTGTCTG GTGCTTCTCCAGCCAAGTAGGTAAACCACGGTCCCTCCACCTTAATCACC ACCTAGCCCTCCCTTCCGGAACAAACAAGAGCAGGCGGCGAACGAGCTCA TCTCGCAAGCAGACGATGTGGCGGTGCGCTCGATGAACCGCGCCGGCACC GGGATGCATGTCAACTGCTCCCGGTGTCGCAACCCGGCCGGGCCCGGCCC GCGCTGCTTCAAGTGCGCCGCCGTGCTCTCGCGCTGCGCGCTCTGCCAGG GCCCCGTGCGCGGCCTGTATGTGTGGTGCCTCGGCTGTGGCCACGGCGGC CACCTCTCGCACATGCAGCAGTGGTTCGGCTACCAGAGCGTCTGCCCGAC GGGCTGCGGCCACCGCTGCAACTTCGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17328:37..764+

>mRNA_P-wetherbeei_contig17328.1.1 ID=mRNA_P-wetherbeei_contig17328.1.1|Name=mRNA_P-wetherbeei_contig17328.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig17328:37..764+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGGGCTGGAGCCGGGGCTGGTGCGTGAGTGGTACGTGACGTACGTTGA
CATCCTGCACCGCCTCGGCCTCTGGAAGGCGGCGAACGAGCTCATCTCGC
AAGCAGACGATGTGGCGGTGCGCTCGATGAACCGCGCCGGCACCGGGATG
CATGTCAACTGCTCCCGGTGTCGCAACCCGGCCGGGCCCGGCCCGCGCTG
CTTCAAGTGCGCCGCCGTGCTCTCGCGCTGCGCGCTCTGCCAGGGCCCCG
TGCGCGGCCTGTATGTGTGGTGCCTCGGCTGTGGCCACGGCGGCCACCTC
TCGCACATGCAGCAGTGGTTCGGCTACCAGAGCGTCTGCCCGACGGGCTG
CGGCCACCGCTGCAACTTCGTG
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