mRNA_P-wetherbeei_contig17313.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17313.3.1
Unique NamemRNA_P-wetherbeei_contig17313.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17313.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17313contigP-wetherbeei_contig17313:923..1385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size464
Hectar predicted targeting categoryother localisation
Exons1
Cds size438
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186113.8758397-CDS-P-wetherbeei_contig17313:922..13601683186113.8758397-CDS-P-wetherbeei_contig17313:922..1360Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17313 923..1360 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186113.8888183-UTR-P-wetherbeei_contig17313:1360..13851683186113.8888183-UTR-P-wetherbeei_contig17313:1360..1385Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17313 1361..1385 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17313.3.1prot_P-wetherbeei_contig17313.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17313 923..1360 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17313.3.1

>prot_P-wetherbeei_contig17313.3.1 ID=prot_P-wetherbeei_contig17313.3.1|Name=mRNA_P-wetherbeei_contig17313.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=146bp
MTAYLSGLHERREMWACYARSRVLTVGMTARSRVESLFAAFKGMVEKVYG
LSGAAQVLTALNARWDMRAVDDAERALRVSGVRVDDRITKFFGNVLVSID
TFSTASIQSKTRVQLNACVYYEAELIKGVGIAAAQAAVLISGVAAA
back to top

mRNA from alignment at P-wetherbeei_contig17313:923..1385-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17313.3.1 ID=mRNA_P-wetherbeei_contig17313.3.1|Name=mRNA_P-wetherbeei_contig17313.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=463bp|location=Sequence derived from alignment at P-wetherbeei_contig17313:923..1385- (Phaeothamnion wetherbeei SAG_119_79)
GGGGCTTCAACGGCTGTCGGCGTCCATGACTGCGTACCTCTCCGGGCTGC
ACGAGCGGAGAGAGATGTGGGCATGCTATGCACGGTCGCGTGTTTTGACC
GTGGGGATGACGGCGAGGTCGCGGGTAGAGTCCTTGTTCGCGGCGTTTAA
GGGTATGGTCGAGAAGGTGTACGGGCTAAGCGGTGCTGCTCAAGTTCTAA
CCGCACTGAACGCGCGATGGGATATGCGGGCGGTGGACGATGCAGAGAGG
GCGCTTCGGGTGTCTGGCGTACGCGTGGATGACCGCATCACCAAGTTCTT
CGGGAACGTGCTTGTCAGCATCGACACCTTCTCAACCGCATCTATTCAGA
GTAAGACCAGAGTGCAGCTTAATGCCTGTGTCTACTACGAAGCGGAGCTG
ATTAAAGGAGTGGGCATCGCTGCTGCTCAAGCTGCCGTGCTGATTTCCGG
TGTTGCGGCAGCA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig17313:923..1385-

>mRNA_P-wetherbeei_contig17313.3.1 ID=mRNA_P-wetherbeei_contig17313.3.1|Name=mRNA_P-wetherbeei_contig17313.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig17313:923..1385- (Phaeothamnion wetherbeei SAG_119_79)
ATGACTGCGTACCTCTCCGGGCTGCACGAGCGGAGAGAGATGTGGGCATG
CTATGCACGGTCGCGTGTTTTGACCGTGGGGATGACGGCGAGGTCGCGGG
TAGAGTCCTTGTTCGCGGCGTTTAAGGGTATGGTCGAGAAGGTGTACGGG
CTAAGCGGTGCTGCTCAAGTTCTAACCGCACTGAACGCGCGATGGGATAT
GCGGGCGGTGGACGATGCAGAGAGGGCGCTTCGGGTGTCTGGCGTACGCG
TGGATGACCGCATCACCAAGTTCTTCGGGAACGTGCTTGTCAGCATCGAC
ACCTTCTCAACCGCATCTATTCAGAGTAAGACCAGAGTGCAGCTTAATGC
CTGTGTCTACTACGAAGCGGAGCTGATTAAAGGAGTGGGCATCGCTGCTG
CTCAAGCTGCCGTGCTGATTTCCGGTGTTGCGGCAGCA
back to top