mRNA_P-wetherbeei_contig1731.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1731.1.1
Unique NamemRNA_P-wetherbeei_contig1731.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1731.1.1 vs. uniprot
Match: D7G521_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G521_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 1.230e-53
Identity = 86/134 (64.18%), Postives = 103/134 (76.87%), Query Frame = 2
Query:  128 YCGDRKYQYPDTLLREMAKAGLELEPLRGELYAQCMKQLTENPSESSAQRGWEVVAMLLSCFPPPDAAENWVHQFVRTNAPAETREKFKLAAHKAHYDGACKALPGEKEMPQMLSAFFNREITARYNVEEDVVA 529
            YCGDRKYQYPD L+R++   GLE+  LRGELY Q MKQLT+N + +S QR WEVV MLL+CFPPP   EN+VH FVR NAP +TREKFKLA H + YDG  +  P  KE+P +LS FF REI+ARYN+EEDVV+
Sbjct:   82 YCGDRKYQYPDPLIRDIVAKGLEMTELRGELYVQAMKQLTKNANPASVQRCWEVVTMLLTCFPPPKDMENYVHYFVRCNAPEDTREKFKLAVHMSVYDGVKETAPSVKEIPPLLSGFFEREISARYNIEEDVVS 215          
BLAST of mRNA_P-wetherbeei_contig1731.1.1 vs. uniprot
Match: A0A6H5KSK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSK5_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 1.630e-50
Identity = 86/134 (64.18%), Postives = 103/134 (76.87%), Query Frame = 2
Query:  128 YCGDRKYQYPDTLLREMAKAGLELEPLRGELYAQCMKQLTENPSESSAQRGWEVVAMLLSCFPPPDAAENWVHQFVRTNAPAETREKFKLAAHKAHYDGACKALPGEKEMPQMLSAFFNREITARYNVEEDVVA 529
            YCGDRKYQYPD L+R++   GLE+  LRGELY Q MKQLT+N + +S QR WEVV MLL+CFPPP   EN+VH FVR NAP +TREKFKLA H + YDG  +  P  KE+P +LS FF REI+ARYN+EEDVV+
Sbjct: 1075 YCGDRKYQYPDPLIRDIVAKGLEMTELRGELYVQAMKQLTKNANPASVQRYWEVVTMLLTCFPPPKDMENYVHYFVRCNAPEDTREKFKLAVHMSVYDGVKETAPSVKEIPPLLSGFFEREISARYNIEEDVVS 1208          
BLAST of mRNA_P-wetherbeei_contig1731.1.1 vs. uniprot
Match: A0A7S1U0W2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0W2_9STRA)

HSP 1 Score: 120 bits (300), Expect = 3.230e-28
Identity = 62/137 (45.26%), Postives = 84/137 (61.31%), Query Frame = 2
Query:  116 SLGDYCGDRKYQYPDTLLREMAKAGLE-LEPLRGELYAQCMKQLTENPSESSAQRGWEVVAMLLSCFPPPDAAENWVHQFVRTNAPAETREKFKLAAHKAHYDGACKALPGEKEMPQMLSAFFNREITARYNVEEDV 523
            SL  Y GDR Y YPD L+ E  + GL     LR E Y Q MKQL  NPS  SA++GWEV+  +LS FPPP++ EN+V  F+R  AP   ++KF +A H + Y G   A     E PQ+LS F+ +E++A+Y  ++ V
Sbjct:  769 SLMAYMGDRAYSYPDQLIAEYLELGLRGKSELRAEFYIQVMKQLRNNPSTESAKKGWEVMIFMLSSFPPPESVENFVALFLRQMAPEGQKDKFSIALHASTYGGGRSAPISLPEFPQILSKFYEQEMSAKYGSDDYV 905          
BLAST of mRNA_P-wetherbeei_contig1731.1.1 vs. uniprot
Match: A0A7S3YT57_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YT57_9EUKA)

HSP 1 Score: 90.1 bits (222), Expect = 9.800e-18
Identity = 42/116 (36.21%), Postives = 72/116 (62.07%), Query Frame = 2
Query:  128 YCGDRKYQYPDTLLREMAKAGLELEPLRGELYAQCMKQLTENPSESSAQRGWEVVAMLLSCFPPPDAAENWVHQFVRTNAPAET-REKFKLAAHKAHYDGACKALPGEKEMPQMLS 472
            + GDR+Y +P+ LL+E+ + G++  PLR EL+AQ +KQ+T+NP   S+ +GW  +A+ L  FPP    EN+   ++R N   E  R ++    H+A + GA +  P E +M ++++
Sbjct: 1236 FMGDRQYNFPELLLKEILEQGIQNPPLRDELFAQIIKQITQNPDNQSSHKGWSAMAVCLESFPPQPEFENYFEVWIRKNIKDEAKRTRYLTLLHQAIFCGARQFPPSEGDMKRIMA 1351          
BLAST of mRNA_P-wetherbeei_contig1731.1.1 vs. uniprot
Match: A0A7S2WRB6_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WRB6_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.430e-17
Identity = 40/116 (34.48%), Postives = 67/116 (57.76%), Query Frame = 2
Query:  128 YCGDRKYQYPDTLLREMAKAGLEL-EPLRGELYAQCMKQLTENPSESSAQRGWEVVAMLLSCFPPPDAAENWVHQFVRTNAPAETREKFKLAAHKAHYDGACKALPGEKEMPQMLS 472
            +CGD+    P++L +E+  +G++  E LR E+Y Q +K LTENP   S  + W++ A+ +  FPP     N++H F+R NAP   ++ +K   +   YDGA    P   ++P ++S
Sbjct: 1258 WCGDKTNPSPNSLAQEIVSSGIQQSEKLRDEIYCQILKHLTENPDPQSLSQAWKLFALCIQYFPPSTDLGNYLHIFIRNNAPPHLKDSYKQYLYSIEYDGAKPVAPAVDQIPSLVS 1373          
BLAST of mRNA_P-wetherbeei_contig1731.1.1 vs. uniprot
Match: A0A6V3LQ19_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A6V3LQ19_9EUKA)

HSP 1 Score: 86.3 bits (212), Expect = 2.090e-16
Identity = 47/132 (35.61%), Postives = 76/132 (57.58%), Query Frame = 2
Query:  128 YCGDRKYQYPDTLL--REMAKAGLELEPLRGELYAQCMKQLTENPSESSAQRGWEVVAMLLSCFPPPDAAENWVHQFVRTNAPAETREKFKLAAHKAHYDGACKAL--PGEKEMPQMLSAFF-NREITARYN 508
            Y G+ +YQ    ++  RE+ +A ++ E  R E+Y Q MKQLT+NP ++S  +GW++V + +S FPPP   EN +  F+R N+P +  ++  LA H   YD    +L  P   +M  +++    NR I + YN
Sbjct: 1051 YMGNPRYQAGQEVILARELLQAAVDSEEQRTEIYCQLMKQLTKNPDKTSMAKGWDLVMLCVSTFPPPSVIENHLEVFIRKNSPKKMMKRIILAMHHKMYDSKQSSLSVPDVNKMNDIVNGNIRNRSICSGYN 1182          
BLAST of mRNA_P-wetherbeei_contig1731.1.1 vs. uniprot
Match: A0A7S2WSL5_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WSL5_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 6.000e-16
Identity = 45/118 (38.14%), Postives = 67/118 (56.78%), Query Frame = 2
Query:  128 YCGDRKYQYPDTLLREMAKAGLELEPLRGELYAQCMKQLTENPSESSAQRGWEVVAMLLSCFPPPDAAENWVHQFVRTNAPAETREKFKLAAHKAHY-DGACKALPGEKEMPQMLSAF 478
            Y GDRKY Y D L  ++  AGLE   LR E++ Q MKQLTENPS+ S  +GW+++ +     P PD  E ++  +++ NAPA+ ++ F  A H   Y     +  P  +++P M   F
Sbjct:   52 YMGDRKYPYTDALACDVLTAGLEEPRLRAEIFIQLMKQLTENPSQDSQAKGWDLLGLCAMTLPLPDDIEFYLSLWLQQNAPAKGQKYFS-AIHALQYGSNTSREKPTLRDVPLMRQEF 168          
BLAST of mRNA_P-wetherbeei_contig1731.1.1 vs. uniprot
Match: A0A7S2WSP4_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WSP4_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.260e-13
Identity = 34/77 (44.16%), Postives = 51/77 (66.23%), Query Frame = 2
Query:  128 YCGDRKYQYPDTLLREMAKAGLELEPLRGELYAQCMKQLTENPSESSAQRGWEVVAMLLSCFPPPDAAENWVHQFVR 358
            Y GDR+Y YP TL  E+ + GL +  LR E++ Q MKQLT+NP +SS  RGW ++ +    FPP ++ EN++  ++R
Sbjct:  528 YMGDRQYSYPVTLAHEILQVGLAVPELRDEIFLQMMKQLTDNPVQSSRDRGWLLMRLAFETFPPSESFENFIELWLR 604          
BLAST of mRNA_P-wetherbeei_contig1731.1.1 vs. uniprot
Match: A0A2R5GMR9_9STRA (Myosin-10 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GMR9_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.190e-12
Identity = 43/125 (34.40%), Postives = 68/125 (54.40%), Query Frame = 2
Query:  128 YCGDRKYQYPDTLLREMAKAGLELEPLRGELYAQCMKQLTENPSESSAQRGWEVVAMLLSCFPPPDAAENWVHQFVRTN-----APAETREKFKLA------AHKAHYDGACKALPGEKEMPQML 469
            Y GDR+Y YP +L +E+ + GL +  LR E+  Q +KQL++NPS  S QRGW ++++ L  FPP +  EN+   ++R       A A + E    A       H+  + G  +A+P   E+  +L
Sbjct: 4075 YMGDREYSYPASLAQEILQVGLAVTELRDEILLQMLKQLSDNPSPKSRQRGWLLLSLALRTFPPSELFENFFELWLRRKGVELRARAGSSEANNWAHLCLNQMHRIVFRGPAEAIPPLDEVHHLL 4199          
BLAST of mRNA_P-wetherbeei_contig1731.1.1 vs. uniprot
Match: A0A7R9YD73_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YD73_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 9.820e-12
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 2
Query:  128 YCGDRKYQYPDTLLREMAKAGLELEPLRGELYAQCMKQLTENPSESSAQRGWEVVAMLLSCFPPPDAAENWVHQFV 355
            Y GD++  +P TL +++ + GLE  PLR E+Y Q MKQL+ NP   S  +GW+++ M +S FPP    EN++  F+
Sbjct:  751 YMGDKQMSFPATLAQDILQKGLENIPLRNEIYCQVMKQLSSNPKPESIAKGWQMMCMCVSTFPPTIDFENYLLNFI 826          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1731.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G521_ECTSI1.230e-5364.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSK5_9PHAE1.630e-5064.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1U0W2_9STRA3.230e-2845.26Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S3YT57_9EUKA9.800e-1836.21Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S2WRB6_9STRA2.430e-1734.48Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A6V3LQ19_9EUKA2.090e-1635.61Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]
A0A7S2WSL5_9STRA6.000e-1638.14Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
A0A7S2WSP4_9STRA2.260e-1344.16Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A2R5GMR9_9STRA4.190e-1234.40Myosin-10 n=1 Tax=Hondaea fermentalgiana TaxID=231... [more]
A0A7R9YD73_9STRA9.820e-1242.11Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1731contigP-wetherbeei_contig1731:4..1025 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size532
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionMyTH4 domain
Ec32 orthologEc-00_008190.1
Cds size516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186113.4596822-CDS-P-wetherbeei_contig1731:3..831683186113.4596822-CDS-P-wetherbeei_contig1731:3..83Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1731 4..83 -
1683186113.468097-CDS-P-wetherbeei_contig1731:266..5911683186113.468097-CDS-P-wetherbeei_contig1731:266..591Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1731 267..591 -
1683186113.4759293-CDS-P-wetherbeei_contig1731:899..10101683186113.4759293-CDS-P-wetherbeei_contig1731:899..1010Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1731 900..1010 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186113.48408-UTR-P-wetherbeei_contig1731:1010..10251683186113.48408-UTR-P-wetherbeei_contig1731:1010..1025Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1731 1011..1025 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1731.1.1prot_P-wetherbeei_contig1731.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1731 4..1010 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1731.1.1

>prot_P-wetherbeei_contig1731.1.1 ID=prot_P-wetherbeei_contig1731.1.1|Name=mRNA_P-wetherbeei_contig1731.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=172bp
MAAGFLKYTSEPIHKSLTEVSGLKGEAVKQFKNLLGRLLRRPQVPVPGYA
PSRDGQGRTGVGAAAGRAVRAVHEAADGEPERVIGAAWLGSGGDAAVVLP
AARRGGKLGAPVRADQCAGGDAGEVQAGGPQSALRRCLQGAAWREGDAAD
AVSVLQPRDHGPLQRRGGCRGS
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mRNA from alignment at P-wetherbeei_contig1731:4..1025-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1731.1.1 ID=mRNA_P-wetherbeei_contig1731.1.1|Name=mRNA_P-wetherbeei_contig1731.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1022bp|location=Sequence derived from alignment at P-wetherbeei_contig1731:4..1025- (Phaeothamnion wetherbeei SAG_119_79)
GCAAAGCAGGGCGAAATGGCGGCCGGCTTCCTCAAGTACACGTCGGAACC GATCCACAAGTCGCTCACGGAGGTGTCGGGGCTCAAGGGCGAGGCCGTCA AGCAGTTCAAGAACCTCCTTGGGCGAGTCCTGGGATGAGGGGACGGAGGG CGACGGTGACAGTTCGCAGTGGCAATAGCGGCGGCAACAAATGGTCGCGG CGGCGGTTCCAGCCGCGACCGGCGGTATGGTGGCCGGCGTGGCAGCAACA ATAGCGGGAGAAGTAGTGCAAGCGCTATCACAGCGGCGGCGGCGGCTTTC CATGCACGAGTGACGTTGTTCTGTCTTGTGGCGAGGAAAACCTGTTCTGA AAACCCCGAGGCCGTTACATCTAGCGCTGTAGTTGACCTTTGCTTCCGTT CCCTGCAACGAAACGTAAAACCTGCCAACGCCAGTTACTGCGGCGACCGC AAGTACCAGTACCCGGATACGCTCCTTCGAGAGATGGCCAAGGCCGGACT GGAGTTGGAGCCGCTGCGGGGCGAGCTGTACGCGCAGTGCATGAAGCAGC TGACGGAGAACCCGAGCGAGTCATCGGCGCAGCGTGGCTGGGAAGTGGTG GCGATGCTGCTGTCGTGCTTCCCGCCGCCCGACGCGGCGGAAAACTGGGT GCACCAGTTCGTGCGGACCAATGCGCCGGCGGAGACGCGGGAGAAGTTCA AGCTGGCGGCCCACAAAGCGCACTACGACGGTGCTTGCAAGGCGCTGCCT GGAGAGAAGGTCAGCCGGAGCCCCCAACATCTGAGAAAACCTTAACCATT CGCCACCTGTTTTATGATGCCTTGAAGCGTGTGAAGGGCTGTATAAGTTG AAAGGAGCGCAGCCTCGCCGTCACGTTTCGCCATTGAGACTCAGTTTTTG ACGGCCGACCCCTTTGCTCTTCCCGATTGTCGGATTGAGCAGGAGATGCC GCAGATGCTGTCAGCGTTCTTCAACCGCGAGATCACGGCCCGTTACAACG TCGAGGAGGATGTCGTGGCAGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1731:4..1025-

>mRNA_P-wetherbeei_contig1731.1.1 ID=mRNA_P-wetherbeei_contig1731.1.1|Name=mRNA_P-wetherbeei_contig1731.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig1731:4..1025- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCCGGCTTCCTCAAGTACACGTCGGAACCGATCCACAAGTCGCT
CACGGAGGTGTCGGGGCTCAAGGGCGAGGCCGTCAAGCAGTTCAAGAACC
TCCTTGGGCGATTACTGCGGCGACCGCAAGTACCAGTACCCGGATACGCT
CCTTCGAGAGATGGCCAAGGCCGGACTGGAGTTGGAGCCGCTGCGGGGCG
AGCTGTACGCGCAGTGCATGAAGCAGCTGACGGAGAACCCGAGCGAGTCA
TCGGCGCAGCGTGGCTGGGAAGTGGTGGCGATGCTGCTGTCGTGCTTCCC
GCCGCCCGACGCGGCGGAAAACTGGGTGCACCAGTTCGTGCGGACCAATG
CGCCGGCGGAGACGCGGGAGAAGTTCAAGCTGGCGGCCCACAAAGCGCAC
TACGACGGTGCTTGCAAGGCGCTGCCTGGAGAGAAGGAGATGCCGCAGAT
GCTGTCAGCGTTCTTCAACCGCGAGATCACGGCCCGTTACAACGTCGAGG
AGGATGTCGTGGCAGT
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