mRNA_P-wetherbeei_contig1730.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1730.5.1 vs. uniprot
Match: A0A6H5JLR1_9PHAE (Aa_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLR1_9PHAE) HSP 1 Score: 273 bits (699), Expect = 5.210e-87 Identity = 142/183 (77.60%), Postives = 164/183 (89.62%), Query Frame = 1
Query: 1 KASMTSSVFNLVKNIMGAGMLSLPAGVAAFSDAKSSILPATAIIAVLGTISAYTFSLIGRSCSETAAESYEQSWARTVSTKTAWLPAGACVSTCFAGCLAYTIIIGDSFSALLKTFGAPAAVSARSTVIMAASALVLLPLGLLKNLSALGFTSMLGTSGLLYTAIMMAVRFFDGSYAPGGRFH 549
K+ M++SVFNL KNI+GAGMLSLP GVAAFSD+K +I+PA+ IIAVLG +SAYTF LIGRSC+ET AESYEQSWARTV ++AW+PAGACV+TCFAGCLA+TIIIGDSFSAL KTFGAPA V+ RS +IMA SA VLLPL LLKNL +LGFTSMLGTSGL+YTA+MMA+RFFDGSYA GG+FH
Sbjct: 97 KSGMSASVFNLAKNILGAGMLSLPNGVAAFSDSKKAIIPASLIIAVLGAVSAYTFVLIGRSCAETNAESYEQSWARTVGQRSAWVPAGACVATCFAGCLAFTIIIGDSFSALAKTFGAPALVAKRSNIIMAVSATVLLPLSLLKNLKSLGFTSMLGTSGLVYTAVMMAIRFFDGSYAAGGKFH 279
BLAST of mRNA_P-wetherbeei_contig1730.5.1 vs. uniprot
Match: A0A835Z2K9_9STRA (Aa_trans domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2K9_9STRA) HSP 1 Score: 208 bits (529), Expect = 6.130e-63 Identity = 131/217 (60.37%), Postives = 151/217 (69.59%), Query Frame = 1
Query: 1 KASMTSSVFNLVKNIMGAGMLSLPA------------GVAA------FSDAKSSILPATAIIAVLGTISAYTFSLIGRSCSETAAESYEQSWARTVSTKTAWLPAGACVSTCFAGCLAYTIIIGDSFSALLKTFGAPAAVSARSTVIMAASALVLLPLGLLKNLSALGFTSMLGTSGLLYTAIMMAVR-----------------FFDGSYAPGGRF 546
K++MT SVFNLVKNIM A + A VAA DA+ +I PA AIIA LG +SAYTFSLIGRSC++T AESYEQ+W+R VS ++A LPAGACV+TCFAGCLAYT+IIGD+FSAL +T GAPA V+ARSTVI SA VLLPL LL+NLSALGFTSMLGT GLLYTA MM +R +FDGSYAP GRF
Sbjct: 81 KSTMTQSVFNLVKNIMEAMTHAHHATHCVHRARRRRHAVAAGGRRRVLRDARGAIAPAGAIIAALGALSAYTFSLIGRSCAQTKAESYEQAWSRAVSPRSAALPAGACVATCFAGCLAYTLIIGDTFSALARTAGAPARVAARSTVIGVLSAGVLLPLSLLRNLSALGFTSMLGTGGLLYTAGMMGLRVLTNTLFVAAAAALMRRYFDGSYAPSGRF 297
BLAST of mRNA_P-wetherbeei_contig1730.5.1 vs. uniprot
Match: A0A836CMH1_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMH1_9STRA) HSP 1 Score: 186 bits (472), Expect = 3.680e-54 Identity = 99/182 (54.40%), Postives = 138/182 (75.82%), Query Frame = 1
Query: 1 KASMTSSVFNLVKNIMGAGMLSLPAGVAAFSDAKSSILPATAIIAVLGTISAYTFSLIGRSCSETAAESYEQSWARTVSTKTAWLPAGACVSTCFAGCLAYTIIIGDSFSALLKTFGAPAAVSARSTVIMAASALVLLPLGLLKNLSALGFTSMLGTSGLLYTAIMMAVRFFDGSYAPGGRF 546
KA + S+FNLVKNI+G+G+L+LP GVAAFS A+ +++PA+ +I +LG +S Y FSLIGR+C+ T A SY +WA TV KT W+P + V+ F CL+Y+IIIGD+F+AL +TF APA ++ R T++ A S + LLPL L+ +LS L +TS++G +G LYTA +MA+R+FDGSYA GGRF
Sbjct: 26 KAEVGGSIFNLVKNIVGSGILALPGGVAAFSHARGAVVPASVLILLLGLLSGYCFSLIGRACAATNARSYGDAWAATVEPKTVWMPLSSVVAKTFFTCLSYSIIIGDTFAALAQTFAAPAWLAYRPTILSAISGVFLLPLCLMTDLSPLRYTSIVGIAGTLYTAGVMALRYFDGSYALGGRF 207
BLAST of mRNA_P-wetherbeei_contig1730.5.1 vs. uniprot
Match: D7FJZ0_ECTSI (Aa_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ0_ECTSI) HSP 1 Score: 186 bits (472), Expect = 1.400e-53 Identity = 91/176 (51.70%), Postives = 131/176 (74.43%), Query Frame = 1
Query: 19 SVFNLVKNIMGAGMLSLPAGVAAFSDAKSSILPATAIIAVLGTISAYTFSLIGRSCSETAAESYEQSWARTVSTKTAWLPAGACVSTCFAGCLAYTIIIGDSFSALLKTFGAPAAVSARSTVIMAASALVLLPLGLLKNLSALGFTSMLGTSGLLYTAIMMAVRFFDGSYAPGGRF 546
S+FNL+KN++GAG+L++P GV AFS ++++++P A+I LG +S Y FSLIGR C+ T A SY +W++T+ KT+WLP +C + F C+AY+IIIGD F+ +L FGAP ++AR+ ++ SALVLLPL LLK+LSAL +TS++G G +YTA +M +R+FD SY GGRF
Sbjct: 70 SIFNLIKNVVGAGILAIPGGVTAFSQSRAAVVPTVAMIVALGGMSGYCFSLIGRVCAATGASSYGDAWSKTIGEKTSWLPTSSCTAKTFFACMAYSIIIGDVFADVLAAFGAPGVLAARTNILCLVSALVLLPLCLLKDLSALSYTSIMGVLGTVYTAAVMGIRYFDNSYVEGGRF 245
BLAST of mRNA_P-wetherbeei_contig1730.5.1 vs. uniprot
Match: A0A6S9E4U8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9E4U8_HETAK) HSP 1 Score: 176 bits (447), Expect = 9.240e-50 Identity = 93/177 (52.54%), Postives = 128/177 (72.32%), Query Frame = 1
Query: 16 SSVFNLVKNIMGAGMLSLPAGVAAFSDAKSSILPATAIIAVLGTISAYTFSLIGRSCSETAAESYEQSWARTVSTKTAWLPAGACVSTCFAGCLAYTIIIGDSFSALLKTFGAPAAVSARSTVIMAASALVLLPLGLLKNLSALGFTSMLGTSGLLYTAIMMAVRFFDGSYAPGGRF 546
+S+FNLVK+I+GAG+L+LP GVAAFSDA ++ A + +G +SAY FSLIGR C+ A++Y +WA+++S KTAWLPA AC GC+ Y+IIIGD+ SAL +TFG PA ++AR+ +++ + V+ PL LLKNL +L FTS+LG G +YT + MA+R DGSY GGRF
Sbjct: 80 ASIFNLVKSIVGAGVLALPGGVAAFSDAPGAMAAAAGLTGAMGLLSAYCFSLIGRVCAAYDAKTYFDAWAKSISPKTAWLPAFACNFKTLIGCILYSIIIGDTASALAQTFGLPAVLAARTNILLLLTGGVIFPLCLLKNLKSLQFTSLLGIGGTVYTGVAMAIRLLDGSYRTGGRF 256
BLAST of mRNA_P-wetherbeei_contig1730.5.1 vs. uniprot
Match: A0A7S2W0Q8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W0Q8_9STRA) HSP 1 Score: 166 bits (419), Expect = 5.330e-47 Identity = 87/181 (48.07%), Postives = 128/181 (70.72%), Query Frame = 1
Query: 4 ASMTSSVFNLVKNIMGAGMLSLPAGVAAFSDAKSSILPATAIIAVLGTISAYTFSLIGRSCSETAAESYEQSWARTVSTKTAWLPAGACVSTCFAGCLAYTIIIGDSFSALLKTFGAPAAVSARSTVIMAASALVLLPLGLLKNLSALGFTSMLGTSGLLYTAIMMAVRFFDGSYAPGGRF 546
A++ + +FNLVK+I+GAG+LSLPAG+AAF +A S++LP+ +I V+G+ISAY FSLIGR C++T A SY ++W +TV + T+W+PA + CF LAY++I+ D+F LL FG + R V+ + +VL+PL L+KNLS+L S+LG G+ YT + M +R+FDGSY G+F
Sbjct: 104 ATIPNEIFNLVKSIVGAGVLSLPAGIAAFGNAPSAVLPSAILILVIGSISAYGFSLIGRVCADTGARSYREAWEKTVGSSTSWMPAASSTFNCFIANLAYSMILADTFKNLLSGFGMEIS---RQNVLFGITLIVLIPLCLMKNLSSLAPFSLLGIMGMAYTILAMGIRYFDGSYGTDGKF 281
BLAST of mRNA_P-wetherbeei_contig1730.5.1 vs. uniprot
Match: A0A7S0AIJ3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AIJ3_9STRA) HSP 1 Score: 163 bits (412), Expect = 3.360e-46 Identity = 89/182 (48.90%), Postives = 130/182 (71.43%), Query Frame = 1
Query: 4 ASMTSSVFNLVKNIMGAGMLSLPAGVAAFSDAKSSILPATAIIAVLGTISAYTFSLIGRSCSETAAESYEQSWARTVSTKTAWLPAGACVSTCFAGCLAYTIIIGDSFSALLKTFGAPAAVSARSTVIMAASALVLLPLGLLKNLSALGFTSMLGTSGLLYTAIMMAVRFFDGSY-APGGRF 546
A++ VFNLVK+I+GAG+LSLPAG+AAF +A S+++PATA++ +G ISAYTF LI R CS T A SY +W +T T+T+W+ A + CFAG L+Y++I+ D+F +LL T G ++ RS ++ + LVLLPL L+KNLS L S++G G++YT++ + +RFF G+Y +P GRF
Sbjct: 133 ATIPDEVFNLVKSIVGAGVLSLPAGIAAFGNAPSALIPATALVVAIGAISAYTFMLIARVCSITGATSYADAWDKTRGTETSWIIAASSALDCFAGNLSYSMILADTFKSLLATIGI---MTTRSNALLGVTGLVLLPLCLVKNLSTLAPFSLVGIMGMVYTSVAIGIRFFGGAYKSPAGRF 311
BLAST of mRNA_P-wetherbeei_contig1730.5.1 vs. uniprot
Match: B8C604_THAPS (Aa_trans domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C604_THAPS) HSP 1 Score: 165 bits (418), Expect = 1.330e-45 Identity = 89/176 (50.57%), Postives = 128/176 (72.73%), Query Frame = 1
Query: 4 ASMTSSVFNLVKNIMGAGMLSLPAGVAAFSDAKSSILPATAIIAVLGTISAYTFSLIGRSCSETAAESYEQSWARTVSTKTAWLPAGACVSTCFAGCLAYTIIIGDSFSALLKTFGAPAAVSARSTVIMAASALVLLPLGLLKNLSALGFTSMLGTSGLLYTAIMMAVRFFDGSYA 531
A+M++ +FN+VK ++G G+LSLPAG+AAF DA S+ +PA+ +IA +G I+AY FSLIGR C+ T A SY +W ++V TAW+PA +CV F LAY++++GD+FSAL T G + R T ++ + +VLLPL LLKNLS+L S+ G +G+LYTA+ MA+R+FDGSY+
Sbjct: 70 ATMSNEMFNMVKAVVGVGVLSLPAGIAAFGDAPSAAIPASILIATIGAIAAYNFSLIGRLCAITGATSYRGAWEKSVGPSTAWIPAVSCVVKTFFAILAYSMVLGDTFSALFTTIGMNVS---RQTSLIGLTLVVLLPLCLLKNLSSLAPFSLAGIAGMLYTAVAMAIRYFDGSYS 242
BLAST of mRNA_P-wetherbeei_contig1730.5.1 vs. uniprot
Match: A0A448ZF14_9STRA (Aa_trans domain-containing protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448ZF14_9STRA) HSP 1 Score: 163 bits (413), Expect = 6.680e-45 Identity = 88/181 (48.62%), Postives = 130/181 (71.82%), Query Frame = 1
Query: 4 ASMTSSVFNLVKNIMGAGMLSLPAGVAAFSDAKSSILPATAIIAVLGTISAYTFSLIGRSCSETAAESYEQSWARTVSTKTAWLPAGACVSTCFAGCLAYTIIIGDSFSALLKTFGAPAAVSARSTVIMAASALVLLPLGLLKNLSALGFTSMLGTSGLLYTAIMMAVRFFDGSYAPGGRF 546
A++ + VFNL+K+I+GAG+LSLPAGV AF +A S+++PA A+IAV+G ISAYTF+LIGR C +T SY +W TV T+W+ A +C C+ G L+Y++I+ D+ S LL + G A R+ ++ + +VLLPL L+KNL++L S++G G+LYT + MA+R+F G+YAPGG+F
Sbjct: 79 ATIPNEVFNLIKSIVGAGVLSLPAGVVAFGNAPSAMIPAVALIAVMGVISAYTFALIGRVCQKTNTMSYADAWDETVGKSTSWIIAMSCFIDCWFGNLSYSMILADTISNLLASIGIAAT---RTQSLLGVTGVVLLPLCLMKNLASLAPFSLIGIIGMLYTTLAMAIRYFSGAYAPGGKF 256
BLAST of mRNA_P-wetherbeei_contig1730.5.1 vs. uniprot
Match: K0S726_THAOC (Aa_trans domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S726_THAOC) HSP 1 Score: 164 bits (416), Expect = 1.110e-44 Identity = 87/176 (49.43%), Postives = 128/176 (72.73%), Query Frame = 1
Query: 4 ASMTSSVFNLVKNIMGAGMLSLPAGVAAFSDAKSSILPATAIIAVLGTISAYTFSLIGRSCSETAAESYEQSWARTVSTKTAWLPAGACVSTCFAGCLAYTIIIGDSFSALLKTFGAPAAVSARSTVIMAASALVLLPLGLLKNLSALGFTSMLGTSGLLYTAIMMAVRFFDGSYA 531
A+M++ +FNLVK ++G G+LSLPAG+AAF +A+S+ +PA A+IA +G I+AY FSL+GR C+ T A SY+ +W +V TAW+P +CV F LAY++++GD+FSAL +TFG + R ++ +A VLLPL +LK+L++L S+ G +G+LYTA+ MA+RFFD SYA
Sbjct: 67 ATMSNEMFNLVKGVLGVGVLSLPAGIAAFGNARSAAIPAAALIASIGAIAAYNFSLLGRLCAITGATSYKSAWELSVGESTAWIPGSSCVIKTFFAILAYSMVLGDTFSALFRTFGLSVS---REKALIGLTATVLLPLCMLKDLASLAPFSLAGIAGMLYTAVAMAIRFFDKSYA 239 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1730.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1730.5.1 >prot_P-wetherbeei_contig1730.5.1 ID=prot_P-wetherbeei_contig1730.5.1|Name=mRNA_P-wetherbeei_contig1730.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=180bp MTSSVFNLVKNIMGAGMLSLPAGVAAFSDAKSSILPATAIIAVLGTISAYback to top mRNA from alignment at P-wetherbeei_contig1730:5588..6714+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1730.5.1 ID=mRNA_P-wetherbeei_contig1730.5.1|Name=mRNA_P-wetherbeei_contig1730.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1127bp|location=Sequence derived from alignment at P-wetherbeei_contig1730:5588..6714+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1730:5588..6714+ >mRNA_P-wetherbeei_contig1730.5.1 ID=mRNA_P-wetherbeei_contig1730.5.1|Name=mRNA_P-wetherbeei_contig1730.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig1730:5588..6714+ (Phaeothamnion wetherbeei SAG_119_79)back to top |