mRNA_P-wetherbeei_contig173.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig173.6.1
Unique NamemRNA_P-wetherbeei_contig173.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig173.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig173contigP-wetherbeei_contig173:8709..10382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1163
Hectar predicted targeting categoryother localisation
Exons3
Cds size909
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186113.0280125-UTR-P-wetherbeei_contig173:8708..87301683186113.0280125-UTR-P-wetherbeei_contig173:8708..8730Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig173 8709..8730 +
1683186113.0375242-UTR-P-wetherbeei_contig173:8896..90861683186113.0375242-UTR-P-wetherbeei_contig173:8896..9086Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig173 8897..9086 +
1683186113.0761385-UTR-P-wetherbeei_contig173:10340..103821683186113.0761385-UTR-P-wetherbeei_contig173:10340..10382Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig173 10341..10382 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186113.0472922-CDS-P-wetherbeei_contig173:9086..93901683186113.0472922-CDS-P-wetherbeei_contig173:9086..9390Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig173 9087..9390 +
1683186113.0660567-CDS-P-wetherbeei_contig173:9735..103401683186113.0660567-CDS-P-wetherbeei_contig173:9735..10340Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig173 9736..10340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig173.6.1prot_P-wetherbeei_contig173.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig173 9087..10340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig173.6.1

>prot_P-wetherbeei_contig173.6.1 ID=prot_P-wetherbeei_contig173.6.1|Name=mRNA_P-wetherbeei_contig173.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=303bp
MPTSRIKELQKRGGFDKAVKEALTKEATADRGEVEALRRRLEAMERQLAA
VGAVTVTGTAAGVTGAVVGPGGPAAEEGAAEGMAKGAAARDTSTDGGDGE
RVLSTNRARNVAEGTKTAVDDAGVLLAGAEPPPTSLAAEPRDWKLRVLQG
YADWAGAVGRALSGALDAVPEDFLATPVCLAERAAMQACAMAAGFGGGSS
GRDKIEDDASAGGGGGAAGRNSAGGDVAGGRADGGVAAAEGDVGVDVVDA
SNRRKKEEAGSSAGDETGADKELRESLQRDAAPPAMVRRGLQWLWSWRRG
PD*
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mRNA from alignment at P-wetherbeei_contig173:8709..10382+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig173.6.1 ID=mRNA_P-wetherbeei_contig173.6.1|Name=mRNA_P-wetherbeei_contig173.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1674bp|location=Sequence derived from alignment at P-wetherbeei_contig173:8709..10382+ (Phaeothamnion wetherbeei SAG_119_79)
CGGGCCACATCTTCACTCGCCGGTGAGCGCCACGGCCTCATAGCACATTG
AGCTGTCATCGTTGCGCCTGCCTGTCGTTATGGATCACCATTTCAAAAGC
AGGTGTTTTGTTAATGCTGATGTGTTTCCATTCTCTGTTATCCCATCTCC
TATCTTCACACTCTTCGTTGCTCCGAGAGTCGCGCCAGGCCCACGCCGGA
GCGTGCCTTCGGCTGGGACTGGCACGCCTGGAACCTGTTCTTCTGCCTGG
CACCGTGCGTCCCGGTCTTCCTCTACCTGAAGCACCAGGAGCCCAAGTTC
AGGCAGGAGCTCGAGGACCGCCGCCGCAAGGCCGAGGACGAGGGGCTGCT
CGCGCCGCTGCTGCGCGGCTACGGCTCCATGCCGACGTCACGCATCAAGG
AGCTGCAGAAGCGCGGCGGCTTCGACAAGGCGGTGAAGGAGGCCCTCACC
AAGGAGGCGACGGCTGATCGCGGCGAGGTGGAGGCGCTGCGGCGGCGGCT
GGAGGCGATGGAGCGGCAGCTGGCGGCGGTCGGGGCAGTGACGGTGACAG
GGACGGCGGCGGGTGTGACGGGAGCCGTGGTGGGCCCAGGGGGCCCTGCA
GCAGAAGAGGGAGCAGCTGAAGGCATGGCGAAGGGAGCGGCGGCCAGAGA
CACATCCACGGATGGAGGCGACGGAGAACGAGGTGAGGGTGCTTCAACGT
CTCGCTTCCGCCAATTCAAACTCCCGTTTTTCTTCATGTTTAGTGGTTTC
TGGGACTGTAGCTGTCGTCCATTTTTGCCTCAGTGAGGCGTTTTGCAGCC
TGTCTAGGCATCATGAACCAGATTTCTCCTTCAGGAAACTGGCATGGCTG
GACAAGAAGAGGAATATCTATCCGTTCTTTATCAAATTGCAAGCTGTTCT
TCCTAGCGATCCATTCCTTCTTCAATTAAAGAAAGATTACCGATAGTTTG
GCGATCAACAGTACGCGCTTTTCGTTCTAGAGCTCATCCCGCAACGATCA
CAATTCTTGTCTTTCGTCTCGCGGCAGTCTTATCGACCAACAGAGCGAGA
AATGTGGCGGAAGGCACAAAGACTGCAGTGGATGACGCGGGGGTGCTTCT
GGCAGGCGCCGAGCCGCCACCAACATCATTGGCAGCGGAGCCAAGAGACT
GGAAACTGCGTGTGCTGCAAGGCTACGCTGACTGGGCGGGAGCAGTGGGT
CGTGCTTTGTCCGGAGCTCTCGACGCGGTTCCCGAGGACTTCCTGGCGAC
TCCGGTGTGTCTGGCGGAGCGGGCTGCCATGCAAGCCTGCGCCATGGCGG
CCGGGTTTGGCGGAGGCAGCAGCGGCAGAGATAAAATCGAGGACGATGCC
AGTGCTGGCGGCGGCGGCGGCGCTGCCGGAAGGAACTCTGCTGGTGGCGA
CGTGGCAGGCGGTCGCGCCGATGGCGGTGTCGCCGCTGCGGAAGGCGATG
TCGGTGTTGATGTTGTCGACGCGAGCAATCGGAGGAAAAAGGAAGAAGCC
GGCTCCAGCGCAGGCGACGAGACTGGTGCGGATAAAGAGCTCCGCGAAAG
CCTCCAAAGGGATGCAGCACCGCCAGCCATGGTGAGACGAGGGTTGCAGT
GGCTTTGGTCGTGGCGGCGAGGTCCAGACTGAGAGAGGCATACAAATAAA
CGTAAAACTAAAACGGTTAAAACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig173:8709..10382+

>mRNA_P-wetherbeei_contig173.6.1 ID=mRNA_P-wetherbeei_contig173.6.1|Name=mRNA_P-wetherbeei_contig173.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=909bp|location=Sequence derived from alignment at P-wetherbeei_contig173:8709..10382+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGACGTCACGCATCAAGGAGCTGCAGAAGCGCGGCGGCTTCGACAA
GGCGGTGAAGGAGGCCCTCACCAAGGAGGCGACGGCTGATCGCGGCGAGG
TGGAGGCGCTGCGGCGGCGGCTGGAGGCGATGGAGCGGCAGCTGGCGGCG
GTCGGGGCAGTGACGGTGACAGGGACGGCGGCGGGTGTGACGGGAGCCGT
GGTGGGCCCAGGGGGCCCTGCAGCAGAAGAGGGAGCAGCTGAAGGCATGG
CGAAGGGAGCGGCGGCCAGAGACACATCCACGGATGGAGGCGACGGAGAA
CGAGTCTTATCGACCAACAGAGCGAGAAATGTGGCGGAAGGCACAAAGAC
TGCAGTGGATGACGCGGGGGTGCTTCTGGCAGGCGCCGAGCCGCCACCAA
CATCATTGGCAGCGGAGCCAAGAGACTGGAAACTGCGTGTGCTGCAAGGC
TACGCTGACTGGGCGGGAGCAGTGGGTCGTGCTTTGTCCGGAGCTCTCGA
CGCGGTTCCCGAGGACTTCCTGGCGACTCCGGTGTGTCTGGCGGAGCGGG
CTGCCATGCAAGCCTGCGCCATGGCGGCCGGGTTTGGCGGAGGCAGCAGC
GGCAGAGATAAAATCGAGGACGATGCCAGTGCTGGCGGCGGCGGCGGCGC
TGCCGGAAGGAACTCTGCTGGTGGCGACGTGGCAGGCGGTCGCGCCGATG
GCGGTGTCGCCGCTGCGGAAGGCGATGTCGGTGTTGATGTTGTCGACGCG
AGCAATCGGAGGAAAAAGGAAGAAGCCGGCTCCAGCGCAGGCGACGAGAC
TGGTGCGGATAAAGAGCTCCGCGAAAGCCTCCAAAGGGATGCAGCACCGC
CAGCCATGGTGAGACGAGGGTTGCAGTGGCTTTGGTCGTGGCGGCGAGGT
CCAGACTGA
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