mRNA_P-wetherbeei_contig17294.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17294.1.1
Unique NamemRNA_P-wetherbeei_contig17294.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17294.1.1 vs. uniprot
Match: A0A7X8XPU4_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XPU4_9BURK)

HSP 1 Score: 201 bits (511), Expect = 8.610e-60
Identity = 114/260 (43.85%), Postives = 174/260 (66.92%), Query Frame = 1 
Query:    1 PEENFSNLQEMQTSQAEKRNSYGSQLGSDLQDMKNEFFAENHYDTENAADGKARVSVNDQGQPKPVPGAETNDQKLARKEFEATEKAQLADKHAEQKESFLKDERQSMKEFLAQNKDNLDNPAVHAELQKMVVSSKKKALQLQQSQEEERMKVDMPPDQKIALKMQEGMNGLHQMDQDHIRAEEESPDAQAIMEHDQKVAAILGERKEQARQEKKDEEFLVDPRKMLAAKQNAGNAPVDPGDHVPAYLAAHLYDLGIYSV 780
            P++NF NLQ+MQ   A +R +    +   L  MK++FFAENHY+T    DGK +V            G ET  QKL R+EFE  ++ QLA+    QK++FL  E+Q +++FLAQN++NL NP + AEL +M++ ++K+A  LQQ  E+ER KVD+PP ++IA  ++  +  LHQM+ +    EE+SPD  A+M+H+Q VA +LGE+K+ A+ +K++E FL++PRK+L A+      PVD G+ +P+YL+  LY++GIY+V
Sbjct:   72 PQKNFDNLQQMQQGHAAQRQAQTDAMKQQLAQMKDKFFAENHYETGEGPDGKPQVLTGXXXXXXXXKGPETPQQKLIREEFEGGKRQQLAETQDNQKDAFLHKEKQDVQKFLAQNQNNLTNPQIQAELTRMMLDTQKRAFGLQQQHEDERWKVDLPPSEEIAAVVEADLADLHQMESEQAAKEEQSPDMLALMQHEQDVAVLLGEQKQVAQIQKQEENFLMNPRKVLTAE----TPPVDLGEVLPSYLSNSLYNMGIYTV 327
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17294.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7X8XPU4_9BURK8.610e-6043.85Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17294contigP-wetherbeei_contig17294:46..828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size783
Hectar predicted targeting categoryother localisation
Exons1
Cds size753
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186112.9545507-UTR-P-wetherbeei_contig17294:45..751683186112.9545507-UTR-P-wetherbeei_contig17294:45..75Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17294 46..75 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186112.9649332-CDS-P-wetherbeei_contig17294:75..8281683186112.9649332-CDS-P-wetherbeei_contig17294:75..828Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17294 76..828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17294.1.1prot_P-wetherbeei_contig17294.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17294 76..828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17294.1.1

>prot_P-wetherbeei_contig17294.1.1 ID=prot_P-wetherbeei_contig17294.1.1|Name=mRNA_P-wetherbeei_contig17294.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=251bp
MQTSQAEKRNSYGSQLGSDLQDMKNEFFAENHYDTENAADGKARVSVNDQ
GQPKPVPGAETNDQKLARKEFEATEKAQLADKHAEQKESFLKDERQSMKE
FLAQNKDNLDNPAVHAELQKMVVSSKKKALQLQQSQEEERMKVDMPPDQK
IALKMQEGMNGLHQMDQDHIRAEEESPDAQAIMEHDQKVAAILGERKEQA
RQEKKDEEFLVDPRKMLAAKQNAGNAPVDPGDHVPAYLAAHLYDLGIYSV
*
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mRNA from alignment at P-wetherbeei_contig17294:46..828+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17294.1.1 ID=mRNA_P-wetherbeei_contig17294.1.1|Name=mRNA_P-wetherbeei_contig17294.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=783bp|location=Sequence derived from alignment at P-wetherbeei_contig17294:46..828+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGAAGAGAACTTTTCCAATCTGCAAGAGATGCAGACCAGCCAGGCCGA
GAAACGCAACAGCTACGGCAGCCAGCTCGGCTCGGATTTACAAGATATGA
AAAATGAGTTCTTCGCCGAAAACCACTACGATACGGAGAACGCTGCCGAC
GGCAAGGCTCGCGTGTCGGTCAACGACCAGGGGCAGCCCAAGCCGGTCCC
GGGCGCCGAAACCAACGATCAGAAACTGGCCCGCAAAGAGTTTGAGGCCA
CCGAAAAGGCTCAGCTCGCCGACAAACATGCCGAGCAAAAAGAGAGCTTC
CTCAAAGACGAAAGGCAGTCGATGAAGGAGTTTCTGGCCCAAAATAAGGA
TAATCTCGACAATCCTGCAGTCCACGCCGAGCTGCAAAAGATGGTGGTCA
GCTCCAAGAAGAAGGCCCTCCAGCTGCAGCAGTCTCAAGAGGAAGAGCGC
ATGAAAGTAGACATGCCGCCCGATCAAAAGATCGCTCTCAAGATGCAAGA
AGGGATGAATGGCCTGCATCAGATGGATCAGGACCACATCCGCGCCGAGG
AAGAGTCCCCTGACGCTCAGGCCATCATGGAGCACGACCAGAAGGTGGCT
GCTATCCTGGGCGAGCGCAAAGAGCAAGCTCGCCAGGAGAAAAAAGACGA
AGAATTTCTGGTCGACCCTCGCAAGATGCTGGCGGCCAAACAGAATGCCG
GCAATGCTCCGGTCGATCCCGGCGACCACGTTCCCGCCTACCTGGCAGCC
CATCTTTACGACCTGGGGATCTACTCCGTTTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17294:46..828+

>mRNA_P-wetherbeei_contig17294.1.1 ID=mRNA_P-wetherbeei_contig17294.1.1|Name=mRNA_P-wetherbeei_contig17294.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=753bp|location=Sequence derived from alignment at P-wetherbeei_contig17294:46..828+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGACCAGCCAGGCCGAGAAACGCAACAGCTACGGCAGCCAGCTCGG
CTCGGATTTACAAGATATGAAAAATGAGTTCTTCGCCGAAAACCACTACG
ATACGGAGAACGCTGCCGACGGCAAGGCTCGCGTGTCGGTCAACGACCAG
GGGCAGCCCAAGCCGGTCCCGGGCGCCGAAACCAACGATCAGAAACTGGC
CCGCAAAGAGTTTGAGGCCACCGAAAAGGCTCAGCTCGCCGACAAACATG
CCGAGCAAAAAGAGAGCTTCCTCAAAGACGAAAGGCAGTCGATGAAGGAG
TTTCTGGCCCAAAATAAGGATAATCTCGACAATCCTGCAGTCCACGCCGA
GCTGCAAAAGATGGTGGTCAGCTCCAAGAAGAAGGCCCTCCAGCTGCAGC
AGTCTCAAGAGGAAGAGCGCATGAAAGTAGACATGCCGCCCGATCAAAAG
ATCGCTCTCAAGATGCAAGAAGGGATGAATGGCCTGCATCAGATGGATCA
GGACCACATCCGCGCCGAGGAAGAGTCCCCTGACGCTCAGGCCATCATGG
AGCACGACCAGAAGGTGGCTGCTATCCTGGGCGAGCGCAAAGAGCAAGCT
CGCCAGGAGAAAAAAGACGAAGAATTTCTGGTCGACCCTCGCAAGATGCT
GGCGGCCAAACAGAATGCCGGCAATGCTCCGGTCGATCCCGGCGACCACG
TTCCCGCCTACCTGGCAGCCCATCTTTACGACCTGGGGATCTACTCCGTT
TAG
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