mRNA_P-wetherbeei_contig1729.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1729.6.1
Unique NamemRNA_P-wetherbeei_contig1729.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1729.6.1 vs. uniprot
Match: A0A7S1U2L0_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2L0_9STRA)

HSP 1 Score: 152 bits (383), Expect = 4.400e-43
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 1
Query:    1 GVYTLMGPELDADGWVKDPMRLDWRTGGVFVTPPGWWHSHHNETDEPAWVLPMQDAGLYTHQRTLDIRFAPP 216
            GVYTLMGPEL+ DGWVKDP+R DW  GGVFVTPPGWWHSHHNE+D+PAWVLP+QDAGLYTHQRTLDIRF+PP
Sbjct:  296 GVYTLMGPELNEDGWVKDPIRCDWTPGGVFVTPPGWWHSHHNESDKPAWVLPIQDAGLYTHQRTLDIRFSPP 367          
BLAST of mRNA_P-wetherbeei_contig1729.6.1 vs. uniprot
Match: A0A7R9UEK6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEK6_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.180e-42
Identity = 62/71 (87.32%), Postives = 67/71 (94.37%), Query Frame = 1
Query:    4 VYTLMGPELDADGWVKDPMRLDWRTGGVFVTPPGWWHSHHNETDEPAWVLPMQDAGLYTHQRTLDIRFAPP 216
            VYTLMG ELD DGWVK+P+R DW TGGVFVTPPGWWHSHHN++DEPAWVLPMQDAGLYTHQRTLDIRF+PP
Sbjct:  305 VYTLMGKELDEDGWVKNPIRCDWTTGGVFVTPPGWWHSHHNDSDEPAWVLPMQDAGLYTHQRTLDIRFSPP 375          
BLAST of mRNA_P-wetherbeei_contig1729.6.1 vs. uniprot
Match: A0A4D9CRY0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRY0_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.380e-39
Identity = 58/70 (82.86%), Postives = 64/70 (91.43%), Query Frame = 1
Query:    1 GVYTLMGPELDADGWVKDPMRLDWRTGGVFVTPPGWWHSHHNETDEPAWVLPMQDAGLYTHQRTLDIRFA 210
            GVYTLMGPEL  DGWVKDP+RLDW TGG FVTPPGWWHSHHN+++E AWVLPMQDAGLYTH R+LDIRF+
Sbjct:  289 GVYTLMGPELGEDGWVKDPIRLDWATGGSFVTPPGWWHSHHNDSEEDAWVLPMQDAGLYTHMRSLDIRFS 358          
BLAST of mRNA_P-wetherbeei_contig1729.6.1 vs. uniprot
Match: A9S827_PHYPA (Predicted protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A9S827_PHYPA)

HSP 1 Score: 140 bits (353), Expect = 5.500e-39
Identity = 57/70 (81.43%), Postives = 64/70 (91.43%), Query Frame = 1
Query:    1 GVYTLMGPELDADGWVKDPMRLDWRTGGVFVTPPGWWHSHHNETDEPAWVLPMQDAGLYTHQRTLDIRFA 210
            G YTLMG ELD++GWVKDP+R+DW TG VF+TPPGWWHSHHNE+ E AWVLP+QDAGLYTHQRTLDIRFA
Sbjct:  265 GTYTLMGKELDSEGWVKDPIRVDWTTGAVFITPPGWWHSHHNESCEEAWVLPIQDAGLYTHQRTLDIRFA 334          
BLAST of mRNA_P-wetherbeei_contig1729.6.1 vs. uniprot
Match: A0A6U7Z3M6_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6U7Z3M6_9EUGL)

HSP 1 Score: 137 bits (345), Expect = 6.090e-38
Identity = 55/70 (78.57%), Postives = 63/70 (90.00%), Query Frame = 1
Query:    4 VYTLMGPELDADGWVKDPMRLDWRTGGVFVTPPGWWHSHHNETDEPAWVLPMQDAGLYTHQRTLDIRFAP 213
            VYTLMGPEL  DGWVK+P++++W  GGVF+TPPGWWHSHHNET EPAWVLP+QDAGL THQ+ LDIRFAP
Sbjct:  264 VYTLMGPELGEDGWVKNPIKMEWAPGGVFITPPGWWHSHHNETGEPAWVLPVQDAGLLTHQQILDIRFAP 333          
BLAST of mRNA_P-wetherbeei_contig1729.6.1 vs. uniprot
Match: W7TWJ4_9STRA (Cupin, RmlC-type n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWJ4_9STRA)

HSP 1 Score: 136 bits (342), Expect = 2.410e-37
Identity = 54/70 (77.14%), Postives = 62/70 (88.57%), Query Frame = 1
Query:    1 GVYTLMGPELDADGWVKDPMRLDWRTGGVFVTPPGWWHSHHNETDEPAWVLPMQDAGLYTHQRTLDIRFA 210
            G YTLMGPELDADGWVKDP+RL+W +G  FVTPPGWWHSHHN+TD+ AWVLP+QDAGL+TH RTL I F+
Sbjct:  254 GTYTLMGPELDADGWVKDPIRLEWASGACFVTPPGWWHSHHNDTDQDAWVLPLQDAGLHTHMRTLKIEFS 323          
BLAST of mRNA_P-wetherbeei_contig1729.6.1 vs. uniprot
Match: A4RUX6_OSTLU (Uncharacterized protein (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RUX6_OSTLU)

HSP 1 Score: 133 bits (334), Expect = 1.100e-36
Identity = 54/69 (78.26%), Postives = 62/69 (89.86%), Query Frame = 1
Query:    1 GVYTLMGPELDADGWVKDPMRLDWRTGGVFVTPPGWWHSHHNETDEPAWVLPMQDAGLYTHQRTLDIRF 207
            GVYTLMG E+D +G++ DP+R DW  GGVF+TPPGWWHSHHNE+D+ AWVLPMQDAGLYTHQRTLDIRF
Sbjct:  227 GVYTLMGKEIDRNGFIIDPIRCDWVPGGVFITPPGWWHSHHNESDDVAWVLPMQDAGLYTHQRTLDIRF 295          
BLAST of mRNA_P-wetherbeei_contig1729.6.1 vs. uniprot
Match: A0A7S0CP83_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0CP83_MICPS)

HSP 1 Score: 134 bits (337), Expect = 4.180e-36
Identity = 56/69 (81.16%), Postives = 61/69 (88.41%), Query Frame = 1
Query:    1 GVYTLMGPELDADGWVKDPMRLDWRTGGVFVTPPGWWHSHHNETDEPAWVLPMQDAGLYTHQRTLDIRF 207
            GVYTLMG E+D +G + DP+R DW  GGVFVTPPGWWHSHHNE+DE AWVLPMQDAGLYTHQRTLDIRF
Sbjct:  289 GVYTLMGKEIDTNGDIVDPIRCDWTPGGVFVTPPGWWHSHHNESDEVAWVLPMQDAGLYTHQRTLDIRF 357          
BLAST of mRNA_P-wetherbeei_contig1729.6.1 vs. uniprot
Match: A0A482SXZ7_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SXZ7_9ARCH)

HSP 1 Score: 131 bits (330), Expect = 5.480e-36
Identity = 54/71 (76.06%), Postives = 61/71 (85.92%), Query Frame = 1
Query:    4 VYTLMGPELDADGWVKDPMRLDWRTGGVFVTPPGWWHSHHNETDEPAWVLPMQDAGLYTHQRTLDIRFAPP 216
            VYTLMGPELD  GWVK+P++  W TG VF TPPGWWHSHHN++ E AWVLPMQDAGLYTHQRTLDI+F+ P
Sbjct:  224 VYTLMGPELDEQGWVKNPVKCVWNTGAVFSTPPGWWHSHHNDSTEAAWVLPMQDAGLYTHQRTLDIQFSLP 294          
BLAST of mRNA_P-wetherbeei_contig1729.6.1 vs. uniprot
Match: A0A7S0C7C2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C7C2_9STRA)

HSP 1 Score: 127 bits (320), Expect = 8.540e-36
Identity = 53/68 (77.94%), Postives = 59/68 (86.76%), Query Frame = 1
Query:    4 VYTLMGPELDADGWVKDPMRLDWRTGGVFVTPPGWWHSHHNETDEPAWVLPMQDAGLYTHQRTLDIRF 207
            VYTLMG E+D+ G++ DP+R DW  G VFVTPPGWWHSHHNE+D  AWVLPMQDAGLYTHQRTLDIRF
Sbjct:   99 VYTLMGKEIDSMGFIVDPIRCDWEEGSVFVTPPGWWHSHHNESDFVAWVLPMQDAGLYTHQRTLDIRF 166          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1729.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1U2L0_9STRA4.400e-4386.11Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7R9UEK6_9STRA1.180e-4287.32Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A4D9CRY0_9STRA1.380e-3982.86Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A9S827_PHYPA5.500e-3981.43Predicted protein n=2 Tax=Physcomitrium patens Tax... [more]
A0A6U7Z3M6_9EUGL6.090e-3878.57Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
W7TWJ4_9STRA2.410e-3777.14Cupin, RmlC-type n=2 Tax=Monodopsidaceae TaxID=425... [more]
A4RUX6_OSTLU1.100e-3678.26Uncharacterized protein (Fragment) n=1 Tax=Ostreoc... [more]
A0A7S0CP83_MICPS4.180e-3681.16Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A482SXZ7_9ARCH5.480e-3676.06Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S0C7C2_9STRA8.540e-3677.94Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1729contigP-wetherbeei_contig1729:6212..6716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog296587.XP_002500358.1
Model size216
Max annot lvl33090|Viridiplantae
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.05e-33
EggNOG OGs29JDT@1|root,2RSN5@2759|Eukaryota,37ZYK@33090|Viridiplantae
Cds size201
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186112.7842984-CDS-P-wetherbeei_contig1729:6211..62651683186112.7842984-CDS-P-wetherbeei_contig1729:6211..6265Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1729 6212..6265 -
1683186112.798152-CDS-P-wetherbeei_contig1729:6554..67011683186112.798152-CDS-P-wetherbeei_contig1729:6554..6701Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1729 6555..6701 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186112.8066084-UTR-P-wetherbeei_contig1729:6701..67161683186112.8066084-UTR-P-wetherbeei_contig1729:6701..6716Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1729 6702..6716 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1729.6.1prot_P-wetherbeei_contig1729.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1729 6212..6701 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1729.6.1

>prot_P-wetherbeei_contig1729.6.1 ID=prot_P-wetherbeei_contig1729.6.1|Name=mRNA_P-wetherbeei_contig1729.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=67bp
MGPELDADGWVKDPMRLDWRTGGVFVTPPGWWHSHHNETDEPAWVLPMQD
AGLYTHQRTLDIRFAPP
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mRNA from alignment at P-wetherbeei_contig1729:6212..6716-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1729.6.1 ID=mRNA_P-wetherbeei_contig1729.6.1|Name=mRNA_P-wetherbeei_contig1729.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=505bp|location=Sequence derived from alignment at P-wetherbeei_contig1729:6212..6716- (Phaeothamnion wetherbeei SAG_119_79)
GGCGTCTACACGCTGATGGGACCCGAGCTGGACGCGGACGGGTGGGTGAA GGACCCGATGCGGCTGGACTGGAGGACCGGCGGCGTGTTCGTGACACCGC CGGGCTGGTGGCACTCCCACCACAACGAGACGGATGAGCCCGCCTGGGTG CTTCCAATGCAGGTGGGTGAAGAGATACGAACAGACGCCACAAGGACTTT CCTTCCTTCATCACTCCTTTTCTCTCATTCTTTTGTCCTGCATTTTGGCG TTCTTTTCCGAATCTTTTTGCTAGCACGCGTGACATCGTTCATGGAATGT TTCAGATGAACCTGTCACTCCAAAATCGACTTGCCGGACGTTACGAAGAA ATATACCTCCTTTGTAAAACAATGTCCCGGACGAGTCCAAAAATTTGCCA CCGCGTTTCCCTGTTCTCTATTTATTGCACGTTTCTACCACCCCCCCGCA GGACGCCGGGCTGTACACACACCAACGCACGCTGGACATCCGCTTCGCGC CGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1729:6212..6716-

>mRNA_P-wetherbeei_contig1729.6.1 ID=mRNA_P-wetherbeei_contig1729.6.1|Name=mRNA_P-wetherbeei_contig1729.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig1729:6212..6716- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGACCCGAGCTGGACGCGGACGGGTGGGTGAAGGACCCGATGCGGCT
GGACTGGAGGACCGGCGGCGTGTTCGTGACACCGCCGGGCTGGTGGCACT
CCCACCACAACGAGACGGATGAGCCCGCCTGGGTGCTTCCAATGCAGGAC
GCCGGGCTGTACACACACCAACGCACGCTGGACATCCGCTTCGCGCCGCC
G
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