mRNA_P-wetherbeei_contig17287.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig17287.1.1 vs. uniprot
Match: A0A536YE97_9PROT (Thioredoxin family protein n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536YE97_9PROT) HSP 1 Score: 147 bits (371), Expect = 8.350e-44 Identity = 70/104 (67.31%), Postives = 83/104 (79.81%), Query Frame = 1
Query: 1 LAMNEEYAAVEPTRAEIEALPGATLLEFGSPFCGHCLRAQPLLEQALAPHAALRHIKIADARGRRLGRSYAVKHWPTLVFLRDGVEVARVVRPQEMAAIDEGLA 312
+A+ +YA EP R E++ALPGATL+EFGSP+CG C RAQPL+ QALA H+ +RHIKIADA GRRLGRSY VK WPTLVFLRDG E AR+VRP + A I + LA
Sbjct: 1 MALTTDYAQTEPKRQEVDALPGATLVEFGSPWCGWCRRAQPLIAQALAAHSGVRHIKIADASGRRLGRSYGVKLWPTLVFLRDGKETARLVRPDKSAEISDALA 104
BLAST of mRNA_P-wetherbeei_contig17287.1.1 vs. uniprot
Match: A0A1I1J3G7_9BURK (Thioredoxin 1 n=2 Tax=Cupriavidus TaxID=106589 RepID=A0A1I1J3G7_9BURK) HSP 1 Score: 144 bits (364), Expect = 1.130e-42 Identity = 68/104 (65.38%), Postives = 83/104 (79.81%), Query Frame = 1
Query: 1 LAMNEEYAAVEPTRAEIEALPGATLLEFGSPFCGHCLRAQPLLEQALAPHAALRHIKIADARGRRLGRSYAVKHWPTLVFLRDGVEVARVVRPQEMAAIDEGLA 312
++M + +AA EPTRAEI+ALPGATLLEFG+P+CG C+RAQPL+E A H A+RHIK+ D GR LGRS+ VK WPTLVFLRDG EVAR+VRP + AI E +A
Sbjct: 1 MSMTKAFAATEPTRAEIDALPGATLLEFGAPWCGFCMRAQPLIETAFGKHPAIRHIKVEDGSGRPLGRSFRVKLWPTLVFLRDGQEVARLVRPADAQAIAEAMA 104
BLAST of mRNA_P-wetherbeei_contig17287.1.1 vs. uniprot
Match: A0A7X6DHH9_9BURK (Thioredoxin family protein n=1 Tax=Ramlibacter lithotrophicus TaxID=2606681 RepID=A0A7X6DHH9_9BURK) HSP 1 Score: 144 bits (362), Expect = 2.020e-42 Identity = 69/105 (65.71%), Postives = 82/105 (78.10%), Query Frame = 1
Query: 7 MNEEYAAVEPTRAEIEALPGATLLEFGSPFCGHCLRAQPLLEQALAPHAALRHIKIADARGRRLGRSYAVKHWPTLVFLRDGVEVARVVRPQEMAAIDEGLACVA 321
MN YA EP+RAE++ALPG TLLEFG+P+CG C AQPL+ QALA H LRH+K+ D GR LGRSY VK WPTL+FLRDG EVAR+VRPQ+ AA+ E LA +A
Sbjct: 1 MNTAYAQREPSRAEVDALPGPTLLEFGAPWCGWCRGAQPLIGQALAAHPGLRHLKVEDGSGRPLGRSYRVKLWPTLIFLRDGEEVARLVRPQDAAAVGEALARIA 105
BLAST of mRNA_P-wetherbeei_contig17287.1.1 vs. uniprot
Match: Q0K1R8_CUPNH (Thioredoxin n=30 Tax=Proteobacteria TaxID=1224 RepID=Q0K1R8_CUPNH) HSP 1 Score: 143 bits (360), Expect = 3.830e-42 Identity = 67/105 (63.81%), Postives = 82/105 (78.10%), Query Frame = 1
Query: 7 MNEEYAAVEPTRAEIEALPGATLLEFGSPFCGHCLRAQPLLEQALAPHAALRHIKIADARGRRLGRSYAVKHWPTLVFLRDGVEVARVVRPQEMAAIDEGLACVA 321
M ++YAA EPTR E++ALPGAT+LEFG+P+CG+C RAQP L +A A H ALRH+KI D GRRLGRS+ +K WPTLVFLRDG EVAR+VRP E I E + +A
Sbjct: 3 MTQQYAATEPTRTEVDALPGATVLEFGAPWCGYCQRAQPALAEAFAVHPALRHLKIEDGSGRRLGRSFHIKLWPTLVFLRDGQEVARLVRPTESEPIREAMRRIA 107
BLAST of mRNA_P-wetherbeei_contig17287.1.1 vs. uniprot
Match: A0A254TH49_9BURK (Thioredoxin n=1 Tax=Noviherbaspirillum denitrificans TaxID=1968433 RepID=A0A254TH49_9BURK) HSP 1 Score: 142 bits (358), Expect = 7.730e-42 Identity = 66/105 (62.86%), Postives = 84/105 (80.00%), Query Frame = 1
Query: 7 MNEEYAAVEPTRAEIEALPGATLLEFGSPFCGHCLRAQPLLEQALAPHAALRHIKIADARGRRLGRSYAVKHWPTLVFLRDGVEVARVVRPQEMAAIDEGLACVA 321
MN++YA EP RAE++ALPG T++EFG+P+CG C+ AQPL+EQA A H ++RHIKI D GR LGRSY +K WPTLVFL+DGVEVAR+VRP + A I + LA +A
Sbjct: 3 MNKDYAESEPPRAEVDALPGPTVVEFGAPWCGFCIGAQPLIEQAFAGHDSVRHIKIEDGPGRSLGRSYRIKLWPTLVFLKDGVEVARLVRPSDAATIRQALAQIA 107
BLAST of mRNA_P-wetherbeei_contig17287.1.1 vs. uniprot
Match: A0A5C8A1G3_9BURK (Thioredoxin n=1 Tax=Cupriavidus sp. TaxID=1873897 RepID=A0A5C8A1G3_9BURK) HSP 1 Score: 142 bits (358), Expect = 8.470e-42 Identity = 67/104 (64.42%), Postives = 83/104 (79.81%), Query Frame = 1
Query: 1 LAMNEEYAAVEPTRAEIEALPGATLLEFGSPFCGHCLRAQPLLEQALAPHAALRHIKIADARGRRLGRSYAVKHWPTLVFLRDGVEVARVVRPQEMAAIDEGLA 312
++MN+ +AA EP RAEI+ALPGATLLEFG+P+CG C+RAQPL+E A A H ++RH+KI DA GR LGRS+ VK WPTLVFLRDG EVAR+VRP + I +A
Sbjct: 1 MSMNKTFAATEPARAEIDALPGATLLEFGAPWCGFCMRAQPLIEAAFAAHPSIRHLKIEDASGRPLGRSFRVKLWPTLVFLRDGQEVARLVRPADADEIARAMA 104
BLAST of mRNA_P-wetherbeei_contig17287.1.1 vs. uniprot
Match: A0A177QZZ9_9PROT (Thioredoxin n=1 Tax=Betaproteobacteria bacterium SCGC AG-212-J23 TaxID=1799662 RepID=A0A177QZZ9_9PROT) HSP 1 Score: 139 bits (351), Expect = 8.470e-41 Identity = 67/102 (65.69%), Postives = 77/102 (75.49%), Query Frame = 1
Query: 7 MNEEYAAVEPTRAEIEALPGATLLEFGSPFCGHCLRAQPLLEQALAPHAALRHIKIADARGRRLGRSYAVKHWPTLVFLRDGVEVARVVRPQEMAAIDEGLA 312
MN YA EP R E++AL G TLLEFGSP+CG+C RAQPLL AL H +RH+KIADA GRRLGRSY VK WPTLVFL+DG E+ R+VRP + A ID LA
Sbjct: 1 MNPRYAEKEPRREEVDALAGPTLLEFGSPWCGYCRRAQPLLASALVEHPDVRHLKIADASGRRLGRSYGVKLWPTLVFLKDGREIERLVRPHDQAEIDAALA 102
BLAST of mRNA_P-wetherbeei_contig17287.1.1 vs. uniprot
Match: UPI001CAAC132 (thioredoxin family protein n=1 Tax=Cupriavidus pampae TaxID=659251 RepID=UPI001CAAC132) HSP 1 Score: 139 bits (350), Expect = 1.440e-40 Identity = 66/106 (62.26%), Postives = 82/106 (77.36%), Query Frame = 1
Query: 1 LAMNEEYAAVEPTRAEIEALPGATLLEFGSPFCGHCLRAQPLLEQALAPHAALRHIKIADARGRRLGRSYAVKHWPTLVFLRDGVEVARVVRPQEMAAIDEGLACV 318
++M + +AA EP R EI+AL GATLLEFG+P+CG C+RAQPL+E A A H +LRH+KI D GR LGRS+ VK WPTLVFLRDG EVAR+VRP + AI E +A +
Sbjct: 1 MSMTKTFAATEPARTEIDALSGATLLEFGAPWCGFCMRAQPLIETAFAGHPSLRHVKIEDGSGRPLGRSFRVKLWPTLVFLRDGQEVARLVRPTDANAIAEAMASI 106
BLAST of mRNA_P-wetherbeei_contig17287.1.1 vs. uniprot
Match: A0A1F4G159_9PROT (Thiol reductase thioredoxin n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4G159_9PROT) HSP 1 Score: 139 bits (349), Expect = 1.870e-40 Identity = 67/108 (62.04%), Postives = 84/108 (77.78%), Query Frame = 1
Query: 1 LAMNEEYAAVEPTRAEIEALPGATLLEFGSPFCGHCLRAQPLLEQALAPHAALRHIKIADARGRRLGRSYAVKHWPTLVFLRDGVEVARVVRPQEMAAIDEGLACVAS 324
+AMN +YA EPTRAE++AL G ++EFGSP+CG+C RAQP + +ALA H +RHIKIADA GR LGRS+ VK WPTLVFL+DG E+AR VRP + A I +GLA + S
Sbjct: 1 MAMNTDYADKEPTRAEVDALQGPAVVEFGSPWCGYCRRAQPFIAEALADHPRVRHIKIADASGRWLGRSFEVKLWPTLVFLKDGKELARAVRPVDAAEIKKGLAKIDS 108
BLAST of mRNA_P-wetherbeei_contig17287.1.1 vs. uniprot
Match: UPI001E5C694B (thioredoxin family protein n=1 Tax=Pseudogulbenkiania sp. MAI-1 TaxID=990370 RepID=UPI001E5C694B) HSP 1 Score: 139 bits (349), Expect = 1.870e-40 Identity = 68/102 (66.67%), Postives = 77/102 (75.49%), Query Frame = 1
Query: 7 MNEEYAAVEPTRAEIEALPGATLLEFGSPFCGHCLRAQPLLEQALAPHAALRHIKIADARGRRLGRSYAVKHWPTLVFLRDGVEVARVVRPQEMAAIDEGLA 312
MN +YA EP RAEI+AL G LLEFG+P+CGHC AQPLL ALA H +RHIKI D RGRRLGRS+ VK WPTLVFLRDG EVAR+VRP + +I LA
Sbjct: 1 MNTDYAWSEPPRAEIDALAGPVLLEFGAPWCGHCQAAQPLLATALAAHPGVRHIKIEDGRGRRLGRSFGVKLWPTLVFLRDGQEVARLVRPDDAESIGRALA 102 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17287.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig17287.1.1 >prot_P-wetherbeei_contig17287.1.1 ID=prot_P-wetherbeei_contig17287.1.1|Name=mRNA_P-wetherbeei_contig17287.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp MNEEYAAVEPTRAEIEALPGATLLEFGSPFCGHCLRAQPLLEQALAPHAAback to top mRNA from alignment at P-wetherbeei_contig17287:198..539- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig17287.1.1 ID=mRNA_P-wetherbeei_contig17287.1.1|Name=mRNA_P-wetherbeei_contig17287.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig17287:198..539- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig17287:198..539- >mRNA_P-wetherbeei_contig17287.1.1 ID=mRNA_P-wetherbeei_contig17287.1.1|Name=mRNA_P-wetherbeei_contig17287.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig17287:198..539- (Phaeothamnion wetherbeei SAG_119_79)back to top |