mRNA_P-wetherbeei_contig1728.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1728.1.1 vs. uniprot
Match: A0A835YZW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZW7_9STRA) HSP 1 Score: 239 bits (611), Expect = 1.200e-73 Identity = 138/274 (50.36%), Postives = 168/274 (61.31%), Query Frame = 1
Query: 226 VSESHKEYLAQAAENRRLAQERRQDGAGKFWRKKKVYDFVRLKQQGKKRDEAKATRWARNITAPMETLLPGQWLEGRVRNLQDFGAWVDVGAERDGLLHVRDMSEGFTTRAADVVTSGDYVNVTVKFVDAKCGSLALSLVPLTAVATAGDSIGAGGFXXXXXXXXGDFGGDMPPLAAGRVAGYGSLSAREPLSSFEDGDELWGEVVKVTNFGAFVECGAEVQGFLHVLEHTPAPRGALPADVFWRGQRLRLYALEVDPERRRLKLTTRRPEALP 1047
VSE HK+YLA+ EN++ A RR + KFWRKK VYDF+R K + + ++ A ATRW RN+T P+ +L G WL G+VRNL+ FGAWVDVGAERDGLLHV DMSEGFT R AD +GD ++VTVK VDA LALS V ++ A +S Y +L + PL E+GDE+WGE+ KVTNFG FVE G EV GFLHV + PA G P++VF R QR+R Y EVD E RLKLT RP LP
Sbjct: 48 VSEQHKQYLAEVEENKKRAAARRLANSKKFWRKKVVYDFIRDKTREQSKEAAAATRWERNVTHPLASLERGVWLTGKVRNLESFGAWVDVGAERDGLLHVSDMSEGFTPRVADAFNTGDIISVTVKHVDAGTNRLALSAVAVSLEEEAEES-------------------------------YEAL--KTPLGEMEEGDEVWGEITKVTNFGVFVEAGVEVAGFLHVSDW-PAAAGRRPSEVFSRRQRVRTYVKEVDTEASRLKLTGVRPSYLP 287
BLAST of mRNA_P-wetherbeei_contig1728.1.1 vs. uniprot
Match: D8LK22_ECTSI (30S ribosomal protein S1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK22_ECTSI) HSP 1 Score: 192 bits (489), Expect = 6.530e-54 Identity = 131/309 (42.39%), Postives = 167/309 (54.05%), Query Frame = 1
Query: 139 RRVRVWTASPVMAEAPENIPPAA-KRKPKKVSESHKEYLAQAAENRRLAQERRQDGAGKFWRKKKVYDFVRLKQQGKK--RDEAKATRWARNITAPMETLLPGQWLEGRVRNLQDFGAWVDVGAERDGLLHVRDMSEGFTTRAADVVTSGDYVNVTVKFVDAKCGSLALSLVPLTAVATAGDSIGAGGFXXXXXXXXGDFGGDMPPLAAGRVAGYGSLSAREPLSSFED---GDELWGEVVKVTNFGAFVECGAEVQGFLHVLEHTPAPRGALPADVFWRGQRLRLYALEVDPERRRLKLTTRRPEALP 1047
R+ RVW S E AA + K K S++H +YL +A NR +A RR+ KF+R KK+YD V K++G+K R+ ATRW R +T +E L G+W++G+VRN++ +GAWVDV AERDGLLHV+DM E FT A +VV + D + VKFVD G L LSLV G GD+P L P S D G ELWG V +VTN GA+V GAEV GFL + E PRG V R +RLR+YA EVD E R+KLT +RP +LP
Sbjct: 70 RKPRVWYDSYKARMKAEKAKEAAWQEKRKTFSKAHNDYLDEAQRNREIAAARREKYTKKFYRDKKIYDIV--KERGRKAVREATWATRWPRQVTRKLEDLQEGEWIKGKVRNVESYGAWVDVNAERDGLLHVKDMGETFTPSAGEVVATKDIIQARVKFVDPVTGKLGLSLVE-----------------------DGPREGDLP------------LPPPRPPISVADVSRGAELWGYVERVTNMGAYVNVGAEVPGFLLLKEIPGRPRGLGAPQVLRRNKRLRVYAREVDREGLRIKLTCKRPRSLP 341
BLAST of mRNA_P-wetherbeei_contig1728.1.1 vs. uniprot
Match: A0A6H5KCP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP4_9PHAE) HSP 1 Score: 193 bits (490), Expect = 7.590e-53 Identity = 131/309 (42.39%), Postives = 167/309 (54.05%), Query Frame = 1
Query: 139 RRVRVWTASPVMAEAPENIPPAA-KRKPKKVSESHKEYLAQAAENRRLAQERRQDGAGKFWRKKKVYDFVRLKQQGKK--RDEAKATRWARNITAPMETLLPGQWLEGRVRNLQDFGAWVDVGAERDGLLHVRDMSEGFTTRAADVVTSGDYVNVTVKFVDAKCGSLALSLVPLTAVATAGDSIGAGGFXXXXXXXXGDFGGDMPPLAAGRVAGYGSLSAREPLSSFED---GDELWGEVVKVTNFGAFVECGAEVQGFLHVLEHTPAPRGALPADVFWRGQRLRLYALEVDPERRRLKLTTRRPEALP 1047
R+ RVW S E AA + K K S++H +YL +A NR +A RR+ KF+R KK+YD V K++G+K R+ ATRW R +T +E L G+W+ G+VRN++ +GAWVDV AERDGLLHV+DM E FT A +VV + D + V VKFVD G L LSLV G GD+P L P S D G ELWG V +VTN GA+V GAEV GFL + E P+G V R +RLR+YA EVD E R+KLT +RP +LP
Sbjct: 215 RKPRVWYDSYKARMKAEKAKEAAWQEKRKTFSKAHNDYLDEAQRNREIAAARREKYTKKFYRDKKIYDIV--KERGRKAVREATWATRWPRQVTRKLEDLQEGEWITGKVRNVESYGAWVDVNAERDGLLHVKDMGETFTPSAGEVVATKDIIQVRVKFVDPVTGKLGLSLVE-----------------------DGPREGDLP------------LPPPRPPISVADVSRGAELWGYVERVTNMGAYVNVGAEVPGFLLLKEIPGRPKGLSAPQVLRRNKRLRVYAREVDREGLRIKLTCKRPRSLP 486
BLAST of mRNA_P-wetherbeei_contig1728.1.1 vs. uniprot
Match: A0A7S2V5P7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5P7_9STRA) HSP 1 Score: 144 bits (362), Expect = 2.040e-36 Identity = 90/217 (41.47%), Postives = 126/217 (58.06%), Query Frame = 1
Query: 400 RNITAPMETLLPGQWLEGRVRNLQDFGAWVDVGAERDGLLHVRDM-SEGFTTRAADVVTSGDYVNVTVKFVDAKCGSLALSLVPLTAVATAGDSIGAGGFXXXXXXXXGDFGGDMPPLAAGRVAGYGSLSAREPLSSFEDGDELWGEVVKVTNFGAFVECGAEVQGFLHVLEHTPAPRGALPADVFWRGQRLRLYALEVDPERRRLKLTTRRPEALP 1047
R ++ P+ L G L G VRN++ FGA+V VGAE+DGLLH++DM S + +RA +V SGD V+V VKFVDA+ L L++ L D G MP + + +L R+ L + E+ D++WG V +VT+FGAFV+ GAEVQ FLH+L++ + A F RGQRLRLY EV+ ++ R+K+T RPE LP
Sbjct: 134 RVVSKPLSELQAGDRLNGTVRNVEKFGAFVHVGAEKDGLLHIKDMCSAQWVSRADEVFKSGDEVSVQVKFVDAEKRLLGLTMKEL-------DDQG------------------MPMIPEEVASALANLD-RQSLKNLEEDDQVWGVVERVTSFGAFVDIGAEVQAFLHILDYPRRVKAASATKSFHRGQRLRLYVKEVELDKNRVKVTAERPEWLP 324
BLAST of mRNA_P-wetherbeei_contig1728.1.1 vs. uniprot
Match: W7TP35_9STRA (30s ribosomal protein s1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TP35_9STRA) HSP 1 Score: 132 bits (332), Expect = 3.560e-31 Identity = 125/377 (33.16%), Postives = 169/377 (44.83%), Query Frame = 1
Query: 46 STMRKSLCLALVLTCPG----AAFVGSGPQQNAGARRVRVWTASPVMAEAPENIPPAAKRKPKKVSESHKEYLAQAAENRRLAQ--ERRQDGAGKFWRKKKVYDFVRLKQQGKKRDEAKATR--------------------------------WA----RNITAPMETLLPGQWLEGRVRNLQDFGAWVDVGAERDGLLHVRDMSE-GFTTRAADVVTSGDYVNVTVKFVDAKCGSLALSLVPLTAVATAGDSIGAGGFXXXXXXXXGDFGGDMPPLAAGRVAGYGSLSAREPLSSFEDGDELWGEVVKVTNFGAFVECGAEVQGFLHVLEHTPAPRGALPADVFWRGQRLRLYALEVDPERRRLKLTTRRPEALP 1047
S R C + L C AAF+ G R RV TA V+AE P P + + + + + +E RL E R+ + RKKK +DF LK+ GK + +A+A + W R P+ L G EG V +++ GA+VD GA +DG + +RD+S+ F A D V GD V+ VK++ G + SLVP V TA + AR L E+ DELWGEV KV+N+GAFV+ GAEVQGFLHV+ + GAL DVF+ G RLR++A+EVD +RRRLKLT RP +LP
Sbjct: 17 SAARTFACCIVALGCVAWSSHAAFISPLHHFGCGRARGRVHTA--VVAERPSVQPTPS------IYSAATGHGEEESEAPRLNSDVEGRRGSPRELERKKKHFDF--LKEVGKNKKQARANKARFRDQRDEYLEEMRKAFKLMQIKERQESGFKWVKRPKRERQIPLGELELGSRHEGVVITVKEHGAYVDFGATKDGFVRLRDLSDRDFVLDARDYVRPGDAVSFFVKYLSPAEGIVTGSLVPAE-VETAEEQ-----------------------------------EARTGLEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHVIYYPRRSEGALTQDVFFPGMRLRVWAMEVDRDRRRLKLTGERPRSLP 347
BLAST of mRNA_P-wetherbeei_contig1728.1.1 vs. uniprot
Match: A0A7S2UTH5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UTH5_9STRA) HSP 1 Score: 124 bits (312), Expect = 9.390e-29 Identity = 88/242 (36.36%), Postives = 121/242 (50.00%), Query Frame = 1
Query: 331 VYDFVRLKQQGKKRDEAKATRWARNITAPMETLLPGQWLEGRVRNLQDFGAWVDVGAERDGLLHVRDMSE-GFTTRAADVVTSGDYVNVTVKFVDAKCGSLALSLVPLTAVATAGDSIGAGGFXXXXXXXXGDFGGDMPPLAAGRVAGYGSLSAREPLSSFEDGDELWGEVVKVTNFGAFVECGAEVQGFLHVLEHTP--APRGALPADVFWRGQRLRLYALEVDPERRRLKLTTRRPEALP 1047
++ + L+Q+ KK K T P+ L P + G V + FGA++DVG E DGLLH+ +SE F V+T G+ + V VK+VDA L L+++PL A A D D DM R PL + DELWGE+ +VT +GA+VE GAEV GFLH ++H A G+ P D G R+R++ +VD ER R+KLT RP+ LP
Sbjct: 167 LFRYKTLQQEKKKASRVKRPLPLDGRT-PLSALSPDMEVSGTVISFAKFGAYIDVGTECDGLLHISQISETDFIEHPRQVMTPGEEIVVRVKWVDADLKKLQLTMLPLKANAEQEDF---------------DEESDMD---------------RIPLEDVDADDELWGEIKRVTAYGAYVELGAEVDGFLHFMDHPQFNAKPGSPPKDFMAVGDRVRVWVSDVDTERERIKLTANRPDTLP 377
BLAST of mRNA_P-wetherbeei_contig1728.1.1 vs. uniprot
Match: A0A7S2EYN2_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EYN2_TRICV) HSP 1 Score: 123 bits (309), Expect = 1.500e-28 Identity = 82/217 (37.79%), Postives = 114/217 (52.53%), Query Frame = 1
Query: 415 PMETLLPGQWLEGRVRNLQDFGAWVDVGAERDGLLHVRDMSEG-FTTRAADVVTSGDYVNVTVKFVDAKCGSLALSLVPLTAVATAGDSIGAGGFXXXXXXXXGDFGGDMPPLAAGRVAGYGSLSAREPLSSFEDGDELWGEVVKVTNFGAFVECGAEVQGFLHVLEH-----TPAPRGALPADVFWRGQRLRLYALEVDPERRRLKLTTRRPEALP 1047
P+ L GQ +EG V +L ++GA+VDVG+ERDGLLHV ++ F V++ GD V V V V + L LS++PL A D D P+ PLS + DELWG++ +VT++GA+VE GAEV+GFLH ++H TP GA P G R+R++A +VD E+ R++LT RPE LP
Sbjct: 169 PLSDLTVGQEVEGTVISLVNYGAYVDVGSERDGLLHVGQITRDLFVEHPRQVLSPGDVVTVRVARVSPELKKLQLSMLPLPAPLDPDDVS------------------DADPI---------------PLSDIDVNDELWGQIERVTDYGAYVELGAEVEGFLHFMDHPEFGLTP---GATPDTYMRPGDRVRVWAADVDEEKGRVRLTANRPEGLP 349
BLAST of mRNA_P-wetherbeei_contig1728.1.1 vs. uniprot
Match: A0A7S2RUE1_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RUE1_9STRA) HSP 1 Score: 122 bits (306), Expect = 1.530e-28 Identity = 90/275 (32.73%), Postives = 136/275 (49.45%), Query Frame = 1
Query: 259 AAENRRLAQERR-QDGAGKFWRKKKVYDFVRLKQQGKKRDEAKAT---------RWARNITAPMETLLPGQWLEGRVRNLQDFGAWVDVGAERDGLLHVRDMSEGFTTRAADVVTSGDYVNVTVKFVDAKCGSLALSLVPLTAVATAGDSIGAGGFXXXXXXXXGDFGGDMPPLAAGRVAGYGSLSAREPLSSFEDGDELWGEVVKVTNFGAFVECGAEVQGFLHVLEHTPAPRGALPADVFWRGQRLRLYALEVDPERRRLKLTTRRPEALPPL 1053
A ENRR A+ R + + R++++ + R ++ K+R++ + + + R+ +E L WL+G+V L D GAWVDVGA+ DG +H+ +S+GF + D ++ G+ VNV V V+ L LS+ L V + + G R L + ++LWG V +VT+FGAF++ GA +GFLHV E+ G D+F RGQRLR Y EVD E RLKLT RP++LP +
Sbjct: 54 AVENRRRAEANRLKQVSASTRRREQLLEVSRRLREKKRREKRERSLGENPKPLQQRERDPERRLEKLAVDAWLDGQVTRLVDHGAWVDVGAQVDGFVHISALSDGFVSSPYDALSVGENVNVRVDSVELSLHRLRLSM--LERVVDEEEVVRQHG------------------------------GERRVLEDISEEEQLWGIVTRVTHFGAFLDVGASREGFLHVSEYPLREMGQWAPDLFHRGQRLRAYVKEVDLELSRLKLTGDRPKSLPKI 296
BLAST of mRNA_P-wetherbeei_contig1728.1.1 vs. uniprot
Match: A0A1E7FWG2_9STRA (S1-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWG2_9STRA) HSP 1 Score: 120 bits (301), Expect = 2.100e-27 Identity = 75/232 (32.33%), Postives = 115/232 (49.57%), Query Frame = 1
Query: 355 QQGKKRDEAKATRWARNITAPMETLLPGQWLEGRVRNLQDFGAWVDVGAERDGLLHVRDMSEGF-TTRAADVVTSGDYVNVTVKFVDAKCGSLALSLVPLTAVATAGDSIGAGGFXXXXXXXXGDFGGDMPPLAAGRVAGYGSLSAREPLSSFEDGDELWGEVVKVTNFGAFVECGAEVQGFLHVLEHTPAPRGALPADVFWRGQRLRLYALEVDPERRRLKLTTRRPEALP 1047
QQ KK+D + AP+ PG + G V +L +GA+VD+G E DGLLH+ ++ F V+T GD V V + + + + L+++ + D+ G + PL+ FE DELWGE+ +VT+FGA+VE GAEV GFLH ++H GA P + RGQR+R++ ++D E+ R+++T RP+ LP
Sbjct: 147 QQDKKKDSRVQRPLGFDERAPLTAFFPGMEVTGTVISLIPYGAYVDIGTECDGLLHISQITRKFFVEHPRQVLTPGDEVTVRIHKISPELKKMQLTMLDVA---------------------------DVEVSLVGSDNDDDDSEEKTPLTEFELDDELWGELKRVTDFGAYVEVGAEVDGFLHFMDHPLWEDGAQPFEFMERGQRVRVWVADLDMEKNRIRVTATRPQNLP 351
BLAST of mRNA_P-wetherbeei_contig1728.1.1 vs. uniprot
Match: A0A448ZNB8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNB8_9STRA) HSP 1 Score: 117 bits (294), Expect = 1.910e-26 Identity = 77/235 (32.77%), Postives = 116/235 (49.36%), Query Frame = 1
Query: 355 QQGKKRDEAKATRWARNITAPMETLLPGQWLEGRVRNLQDFGAWVDVGAERDGLLHVRDMSEGF-TTRAADVVTSGDYVNVTVKFVDAKCGSLALSLVPLTAVATAGDSIGAGGFXXXXXXXXGDFGGDMPPLAAGRVAGYGSLS---AREPLSSFEDGDELWGEVVKVTNFGAFVECGAEVQGFLHVLEHTPAPRGALPADVFWRGQRLRLYALEVDPERRRLKLTTRRPEALP 1047
Q+ KK+D + AP+ PG + G V +L ++GA+VDVG E DGLLH+ M+ F VVT GD V V ++ + + L+++ D + G ++ R LS FE DELWGE+ +VT+FGA+VE GAEV FLH ++H G P++ RGQR+R++ ++D E++R+++T RPE LP
Sbjct: 143 QREKKKDSRIKRPLGFDERAPLTAFFPGMEVTGTVISLTNYGAYVDVGTECDGLLHISQMTRDFFVEHPRQVVTPGDEVTVKIRSTSPELKKMQLTML------------------------------DAAEQSESNSWGNNAIEDDEERTSLSEFELDDELWGELRRVTSFGAYVEVGAEVDAFLHFMDHPLWEDGKTPSEFMERGQRVRVWVADLDMEKKRIRVTACRPEDLP 347 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1728.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1728.1.1 >prot_P-wetherbeei_contig1728.1.1 ID=prot_P-wetherbeei_contig1728.1.1|Name=mRNA_P-wetherbeei_contig1728.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=363bp MDAHVRNRRKTAIAISTMRKSLCLALVLTCPGAAFVGSGPQQNAGARRVRback to top mRNA from alignment at P-wetherbeei_contig1728:549..1791- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1728.1.1 ID=mRNA_P-wetherbeei_contig1728.1.1|Name=mRNA_P-wetherbeei_contig1728.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1243bp|location=Sequence derived from alignment at P-wetherbeei_contig1728:549..1791- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1728:549..1791- >mRNA_P-wetherbeei_contig1728.1.1 ID=mRNA_P-wetherbeei_contig1728.1.1|Name=mRNA_P-wetherbeei_contig1728.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1089bp|location=Sequence derived from alignment at P-wetherbeei_contig1728:549..1791- (Phaeothamnion wetherbeei SAG_119_79)back to top |