mRNA_P-wetherbeei_contig17278.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17278.1.1
Unique NamemRNA_P-wetherbeei_contig17278.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17278.1.1 vs. uniprot
Match: UPI0011432579 (hypothetical protein n=1 Tax=Pseudomonas ogarae (strain DSM 112162 / CECT 30235 / F113) TaxID=1114970 RepID=UPI0011432579)

HSP 1 Score: 60.8 bits (146), Expect = 4.830e-8
Identity = 48/154 (31.17%), Postives = 71/154 (46.10%), Query Frame = 1 
Query:    1 HDDQVGPFARMA------LCGE---RYFVLTTSWKDNTGKMGTEGNMIAVGDAIIVPLAKNIRVPATTIYAQIQVMTSLSKFVAEVLKDAAYEFTWDLQLFSDSGIKSFWRQS--TLSNARKRALLIDGIPPYVWLVSCSNSSGLVFHMLFDAT 429
            HDDQ+GPFARMA      + G+   R  VL TSW +          + A  D I++PL   IR+P   ++  I  + ++ + V            WD+ L + S  KS  R     L    K +L +D +P ++W V+  +   L    LFDAT
Sbjct:  325 HDDQIGPFARMAWNSLPQIVGQTCPRGDVLDTSWGER---------VFAAPDFILMPLYHKIRIPYVLVHDAILQLDAIMENVRTQAIPTLNRPEWDIYLITSSDYKSSIRSEYLQLDVDIKSSLFVD-LPRFLWRVTLRDGDNLHLDFLFDAT 468
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17278.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00114325794.830e-831.17hypothetical protein n=1 Tax=Pseudomonas ogarae (s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17278contigP-wetherbeei_contig17278:3..434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size432
Hectar predicted targeting categoryother localisation
Exons1
Cds size402
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186112.511556-UTR-P-wetherbeei_contig17278:2..321683186112.511556-UTR-P-wetherbeei_contig17278:2..32Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17278 3..32 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186112.5212913-CDS-P-wetherbeei_contig17278:32..4341683186112.5212913-CDS-P-wetherbeei_contig17278:32..434Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17278 33..434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17278.1.1prot_P-wetherbeei_contig17278.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17278 33..434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17278.1.1

>prot_P-wetherbeei_contig17278.1.1 ID=prot_P-wetherbeei_contig17278.1.1|Name=mRNA_P-wetherbeei_contig17278.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp
MALCGERYFVLTTSWKDNTGKMGTEGNMIAVGDAIIVPLAKNIRVPATTI
YAQIQVMTSLSKFVAEVLKDAAYEFTWDLQLFSDSGIKSFWRQSTLSNAR
KRALLIDGIPPYVWLVSCSNSSGLVFHMLFDATD
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mRNA from alignment at P-wetherbeei_contig17278:3..434+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17278.1.1 ID=mRNA_P-wetherbeei_contig17278.1.1|Name=mRNA_P-wetherbeei_contig17278.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig17278:3..434+ (Phaeothamnion wetherbeei SAG_119_79)
CACGACGACCAGGTAGGGCCGTTTGCCCGCATGGCCTTATGTGGAGAGCG
ATATTTTGTCCTCACGACATCCTGGAAAGACAACACAGGCAAAATGGGAA
CTGAAGGAAATATGATAGCGGTAGGTGACGCTATCATCGTTCCATTGGCA
AAGAATATTCGCGTCCCTGCCACGACTATCTACGCACAAATCCAGGTGAT
GACTTCGCTTTCTAAGTTTGTGGCAGAAGTGTTGAAAGATGCTGCTTACG
AATTTACGTGGGACCTTCAGTTGTTTTCAGACAGCGGAATCAAAAGCTTC
TGGAGGCAATCTACTTTAAGCAACGCGAGAAAAAGAGCCCTCCTCATTGA
TGGTATCCCGCCTTACGTTTGGCTTGTTAGTTGCTCCAATTCATCCGGCT
TAGTCTTTCACATGCTCTTTGACGCAACGGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17278:3..434+

>mRNA_P-wetherbeei_contig17278.1.1 ID=mRNA_P-wetherbeei_contig17278.1.1|Name=mRNA_P-wetherbeei_contig17278.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig17278:3..434+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCTTATGTGGAGAGCGATATTTTGTCCTCACGACATCCTGGAAAGA
CAACACAGGCAAAATGGGAACTGAAGGAAATATGATAGCGGTAGGTGACG
CTATCATCGTTCCATTGGCAAAGAATATTCGCGTCCCTGCCACGACTATC
TACGCACAAATCCAGGTGATGACTTCGCTTTCTAAGTTTGTGGCAGAAGT
GTTGAAAGATGCTGCTTACGAATTTACGTGGGACCTTCAGTTGTTTTCAG
ACAGCGGAATCAAAAGCTTCTGGAGGCAATCTACTTTAAGCAACGCGAGA
AAAAGAGCCCTCCTCATTGATGGTATCCCGCCTTACGTTTGGCTTGTTAG
TTGCTCCAATTCATCCGGCTTAGTCTTTCACATGCTCTTTGACGCAACGG
AT
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