mRNA_P-wetherbeei_contig17272.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17272.1.1
Unique NamemRNA_P-wetherbeei_contig17272.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17272.1.1 vs. uniprot
Match: A0A183EKZ7_9BILA (ACOX domain-containing protein n=1 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A183EKZ7_9BILA)

HSP 1 Score: 64.3 bits (155), Expect = 3.910e-12
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    1 RQVVELLREVRSDAVALVDAWDFSDGQLQSALGRRDGEVYAALKAEAARNPLNAQETVARFEK 189
            R V E++  +R +AVALVD++DFSD +L S LGRRDG VYAA+   A  + LN  E +A FEK
Sbjct:    6 RGVYEIMECLRPEAVALVDSFDFSDRELHSVLGRRDGNVYAAMLEWAKHSKLNKTEVIATFEK 68          
BLAST of mRNA_P-wetherbeei_contig17272.1.1 vs. uniprot
Match: A0A183H9Z6_9BILA (ACOX domain-containing protein n=1 Tax=Onchocerca flexuosa TaxID=387005 RepID=A0A183H9Z6_9BILA)

HSP 1 Score: 63.5 bits (153), Expect = 7.880e-12
Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 1
Query:    7 VVELLREVRSDAVALVDAWDFSDGQLQSALGRRDGEVYAALKAEAARNPLNAQETVARFEK 189
            + E+L ++R DAVA+VD++DFSD +L S LGRRDG VYAA+   A  + LN  E ++ FEK
Sbjct:    8 IYEILGKLRPDAVAIVDSFDFSDRELHSVLGRRDGNVYAAMLEWAKHSELNKTEVLSTFEK 68          
BLAST of mRNA_P-wetherbeei_contig17272.1.1 vs. uniprot
Match: A0A662WIB8_9STRA (Acyl-coenzyme A oxidase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WIB8_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.570e-11
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 1
Query:    1 RQVVELLREVRSDAVALVDAWDFSDGQLQSALGRRDGEVYAALKAEAARNPLNAQETVARFE 186
            +Q++ LL  VR +AV L DAWDFSD +L S +GR DG++Y AL A AAR PLNA++    +E
Sbjct:  610 QQMLRLLLAVRQNAVRLTDAWDFSDLELNSTIGRFDGDIYRALVAHAAREPLNAKQVPEDYE 671          
BLAST of mRNA_P-wetherbeei_contig17272.1.1 vs. uniprot
Match: A0A7S2A5P7_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A5P7_TRICV)

HSP 1 Score: 64.7 bits (156), Expect = 4.440e-11
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    7 VVELLREVRSDAVALVDAWDFSDGQLQSALGRRDGEVYAALKAEAARNPLNAQE 168
            V+ +L +VR DAV LVDAWD+SD +L+SALGR DG+VY A+   A R+PLN  E
Sbjct:  153 VLVMLDKVRPDAVGLVDAWDYSDFRLKSALGRYDGDVYPAVMESAKRDPLNGTE 206          
BLAST of mRNA_P-wetherbeei_contig17272.1.1 vs. uniprot
Match: D0NF08_PHYIT (Acyl-coenzyme A oxidase n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NF08_PHYIT)

HSP 1 Score: 65.9 bits (159), Expect = 4.800e-11
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    1 RQVVELLREVRSDAVALVDAWDFSDGQLQSALGRRDGEVYAALKAEAARNPLNAQETVARFEK 189
            +Q+ +LL  VR +AV L DAWDFSD +L S +GR DG++Y AL  +  R PLNA E V  ++K
Sbjct:  604 QQLQKLLSPVRRNAVRLTDAWDFSDFELNSTIGRYDGDIYRALVEQTKREPLNASEVVDEYDK 666          
BLAST of mRNA_P-wetherbeei_contig17272.1.1 vs. uniprot
Match: K3WDE7_GLOUD (Acyl-coenzyme A oxidase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WDE7_GLOUD)

HSP 1 Score: 65.5 bits (158), Expect = 6.560e-11
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    4 QVVELLREVRSDAVALVDAWDFSDGQLQSALGRRDGEVYAALKAEAARNPLNAQETVARFEK 189
            Q+V LL  VR +AV L DAWDFSD +L S +GR DG++Y AL A AAR PLN  +    ++K
Sbjct:  609 QLVALLPVVRKNAVLLTDAWDFSDFELNSTIGRYDGDIYHALVAHAAREPLNRTQVADSYDK 670          
BLAST of mRNA_P-wetherbeei_contig17272.1.1 vs. uniprot
Match: A0A329RRX3_9STRA (Acyl-coenzyme A oxidase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RRX3_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 6.560e-11
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    1 RQVVELLREVRSDAVALVDAWDFSDGQLQSALGRRDGEVYAALKAEAARNPLNAQETVARFEK 189
            +Q+ +LL  VR +AV L DAWDFSD +L S +GR DG++Y AL  +  R PLNA E V  ++K
Sbjct:  608 QQLQKLLSPVRRNAVRLTDAWDFSDFELNSTIGRYDGDIYRALVEQTKREPLNASEMVDEYDK 670          
BLAST of mRNA_P-wetherbeei_contig17272.1.1 vs. uniprot
Match: UPI001458D210 (peroxisomal acyl-coenzyme A oxidase 1-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458D210)

HSP 1 Score: 60.8 bits (146), Expect = 8.480e-11
Identity = 32/63 (50.79%), Postives = 42/63 (66.67%), Query Frame = 1
Query:    1 RQVVELLREVRSDAVALVDAWDFSDGQLQSALGRRDGEVYAALKAEAARNPLNAQETVARFEK 189
            R++ +LL EVR +AV  VDA++F D QL S LGR DG+VY AL   A  +PLNA +  + F K
Sbjct:    4 RKLGDLLEEVRPNAVTFVDAFEFHDNQLDSCLGRNDGQVYEALYKYAKSSPLNATDVHSSFHK 66          
BLAST of mRNA_P-wetherbeei_contig17272.1.1 vs. uniprot
Match: A0A6H5K710_9PHAE (ACOX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K710_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 8.620e-11
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 1
Query:    4 QVVELLREVRSDAVALVDAWDFSDGQLQSALGRRDGEVYAALKAEAARNPLNAQETVARFE 186
            QVVE+L  +R  AV+LVDAWD SD QL SALGR DG  Y AL     RNPLN ++ V  +E
Sbjct:  306 QVVEVLHLLRPMAVSLVDAWDLSDFQLNSALGRFDGRAYEALLETTERNPLNGRDPVQGYE 366          
BLAST of mRNA_P-wetherbeei_contig17272.1.1 vs. uniprot
Match: H3GAW6_PHYRM (Acyl-coenzyme A oxidase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GAW6_PHYRM)

HSP 1 Score: 65.1 bits (157), Expect = 8.970e-11
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    1 RQVVELLREVRSDAVALVDAWDFSDGQLQSALGRRDGEVYAALKAEAARNPLNAQETVARFEK 189
            +Q+ +LL  VR +AV L DAWDFSD +L SA+GR DG++Y AL  +A R PLN  E    +EK
Sbjct:  610 QQLQKLLPPVRRNAVRLTDAWDFSDFELNSAIGRYDGDIYRALVEQAEREPLNISEVPEGYEK 672          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17272.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A183EKZ7_9BILA3.910e-1253.97ACOX domain-containing protein n=1 Tax=Gongylonema... [more]
A0A183H9Z6_9BILA7.880e-1252.46ACOX domain-containing protein n=1 Tax=Onchocerca ... [more]
A0A662WIB8_9STRA2.570e-1153.23Acyl-coenzyme A oxidase n=2 Tax=Nothophytophthora ... [more]
A0A7S2A5P7_TRICV4.440e-1159.26Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
D0NF08_PHYIT4.800e-1150.79Acyl-coenzyme A oxidase n=2 Tax=Phytophthora infes... [more]
K3WDE7_GLOUD6.560e-1153.23Acyl-coenzyme A oxidase n=1 Tax=Globisporangium ul... [more]
A0A329RRX3_9STRA6.560e-1150.79Acyl-coenzyme A oxidase n=2 Tax=Phytophthora TaxID... [more]
UPI001458D2108.480e-1150.79peroxisomal acyl-coenzyme A oxidase 1-like n=1 Tax... [more]
A0A6H5K710_9PHAE8.620e-1157.38ACOX domain-containing protein n=1 Tax=Ectocarpus ... [more]
H3GAW6_PHYRM8.970e-1152.38Acyl-coenzyme A oxidase n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17272contigP-wetherbeei_contig17272:874..1321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4787.PITG_10309T0
PFAMsACOX,Acyl-CoA_dh_M,Acyl-CoA_ox_N
Model size189
Max annot lvl4776|Peronosporales
KEGG rclassRC00052,RC00076
KEGG koko:K00232
KEGG ReactionR01175,R01279,R03777,R03857,R03990,R04751,R04754,R07888,R07892,R07896,R07934,R07950
KEGG Pathwayko00071,ko00592,ko01040,ko01100,ko01110,ko01212,ko03320,ko04024,ko04146,map00071,map00592,map01040,map01100,map01110,map01212,map03320,map04024,map04146
KEGG ModuleM00087,M00113
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.87e-12
EggNOG OGsCOG1960@1|root,KOG0136@2759|Eukaryota,3QDD3@4776|Peronosporales
EC1.3.3.6
DescriptionAcyl-coenzyme A oxidase N-terminal
Cds size189
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186112.4748108-CDS-P-wetherbeei_contig17272:873..9851683186112.4748108-CDS-P-wetherbeei_contig17272:873..985Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17272 874..985 -
1683186112.4852617-CDS-P-wetherbeei_contig17272:1244..13211683186112.4852617-CDS-P-wetherbeei_contig17272:1244..1321Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17272 1245..1321 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17272.1.1prot_P-wetherbeei_contig17272.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17272 874..1321 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17272.1.1

>prot_P-wetherbeei_contig17272.1.1 ID=prot_P-wetherbeei_contig17272.1.1|Name=mRNA_P-wetherbeei_contig17272.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=63bp
RQVVELLREVRSDAVALVDAWDFSDGQLQSALGRRDGEVYAALKAEAARN
PLNAQETVARFEK
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mRNA from alignment at P-wetherbeei_contig17272:874..1321-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17272.1.1 ID=mRNA_P-wetherbeei_contig17272.1.1|Name=mRNA_P-wetherbeei_contig17272.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=448bp|location=Sequence derived from alignment at P-wetherbeei_contig17272:874..1321- (Phaeothamnion wetherbeei SAG_119_79)
CGGCAGGTCGTCGAACTGCTGCGGGAGGTGCGGTCGGATGCCGTGGCGCT GGTGGACGCGTGGGACTTCTCAGACGGGTGAGTTCGCTATAGCTTGGGCG TGTTCCTTTTTCTGTTTTTTTGGCCCTCTTCTGGACGGAAAGCGATAGTC GGAAGGCTTCTGCGTGCTATTGTGGCATGCCGGCCGGCCCCTTTAAACTT CTTGCTTTTCTTCCTTTGTGCCTTGCCGCTTTCGCTGGCTGTCGCTCCTA CTGCTCTAATGCTGCACCATCGCTCGGCTCGGCGGCGCCGCCCATCACTG CCATAATTGCTCGTTTGCTTTCTCTTCCTCCCGCAGACAGCTGCAGTCGG CGCTCGGGCGGCGGGACGGAGAAGTGTACGCGGCGCTCAAGGCCGAGGCC GCGCGCAACCCGCTCAACGCCCAGGAGACCGTGGCCCGGTTCGAGAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17272:874..1321-

>mRNA_P-wetherbeei_contig17272.1.1 ID=mRNA_P-wetherbeei_contig17272.1.1|Name=mRNA_P-wetherbeei_contig17272.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig17272:874..1321- (Phaeothamnion wetherbeei SAG_119_79)
CGGCAGGTCGTCGAACTGCTGCGGGAGGTGCGGTCGGATGCCGTGGCGCT
GGTGGACGCGTGGGACTTCTCAGACGGACAGCTGCAGTCGGCGCTCGGGC
GGCGGGACGGAGAAGTGTACGCGGCGCTCAAGGCCGAGGCCGCGCGCAAC
CCGCTCAACGCCCAGGAGACCGTGGCCCGGTTCGAGAAG
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