mRNA_P-wetherbeei_contig17262.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17262.1.1
Unique NamemRNA_P-wetherbeei_contig17262.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17262.1.1 vs. uniprot
Match: A0A0U9HN80_KLENI (Transcription factor IIB n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HN80_KLENI)

HSP 1 Score: 57.8 bits (138), Expect = 2.960e-6
Identity = 53/202 (26.24%), Postives = 87/202 (43.07%), Query Frame = 1 
Query:    4 ACFEGVKDIAHDLRLHDSVAKDAIRLLKIADDENIFKRKAGASGDAMCGAALYLVCKQQGASRTFHEMSHAAGVPQGDITKRLRLLQKNDKLSEFAGGVVRPEHLVPRFCSLLDFQQWVSAAALHVAQKAGELHLNSGQQPQAMAAAALLLSAGAFGMLAGRSAKEVAEVTKAVADVCGAKPRTVSKGYAALYPHRYSLLSE 609
            + F  + ++A  L L  ++   A  + K   D    +   G S  A+CGA LY+ C+Q+  +R+F E+  A         K+      N        GVV     V RF S LD +     AA  V ++  + + + G+ P       + ++AG   ML+ +  ++     K V+   G    T+   YA LYP+R  L+ E
Sbjct: 1021 SAFRTISEMAERLNLVVAIKDRACEIYKEIQDSQSIR---GRSQAAICGACLYIACRQEEKARSFKEIGTATQAATVKEIKKCTAFVVNTLSKRM--GVVSAADYVRRFASNLDLKHKFVQAAEEVVRRF-DAYKDKGRSP-------ISVAAGVIFMLS-QLTEDDRRTWKEVSQASGVSEGTLKLSYADLYPYREQLIPE 1208
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17262.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0U9HN80_KLENI2.960e-626.24Transcription factor IIB n=1 Tax=Klebsormidium nit... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17262contigP-wetherbeei_contig17262:2..619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog121225.PHUM626400-PA
Preferred nameGTF2B
PFAMsTFIIB,TF_Zn_Ribbon
Model size618
Max annot lvl33208|Metazoa
KEGG koko:K03124
KEGG Pathwayko03022,ko05169,ko05203,map03022,map05169,map05203
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0000976,GO:0000977,GO:0000979,GO:0000993,GO:0001012,GO:0001046,GO:0001047,GO:0001067,GO:0001098,GO:0001099,GO:0001173,GO:0001174,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005694,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006473,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009301,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016073,GO:0016407,GO:0016591,GO:0016604,GO:0016740,GO:0016746,GO:0016747,GO:0017025,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0022607,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0032993,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035257,GO:0035821,GO:0036211,GO:0042795,GO:0043167,GO:0043169,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043388,GO:0043412,GO:0043543,GO:0043565,GO:0043900,GO:0043902,GO:0043903,GO:0043921,GO:0043923,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046782,GO:0046872,GO:0046914,GO:0046966,GO:0048518,GO:0048522,GO:0048524,GO:0050434,GO:0050789,GO:0050792,GO:0050794,GO:0051098,GO:0051099,GO:0051101,GO:0051123,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051427,GO:0051702,GO:0051704,GO:0051817,GO:0051851,GO:0052312,GO:0052472,GO:0055029,GO:0060255,GO:0060260,GO:0060261,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0070063,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097550,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1904796,GO:1904798,GO:1990114,GO:1990234,GO:1990837,GO:1990841,GO:2000112,GO:2000142,GO:2000144,GO:2000677,GO:2000679,GO:2001141
Exons1
Evalue5.55e-17
EggNOG OGsCOG1405@1|root,KOG1597@2759|Eukaryota,38ZN1@33154|Opisthokonta,3BCZE@33208|Metazoa,3CXPK@33213|Bilateria,41TQP@6656|Arthropoda,3SHBM@50557|Insecta,3E7NY@33342|Paraneoptera
Ec32 ortholog descriptionTranscription factor TFIIB
Ec32 orthologEc-01_005140.1
DescriptionTranscription factor TFIIB repeat
Cds size618
COG categoryK
BRITEko00000,ko00001,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186112.246325-CDS-P-wetherbeei_contig17262:1..6191683186112.246325-CDS-P-wetherbeei_contig17262:1..619Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17262 2..619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17262.1.1prot_P-wetherbeei_contig17262.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17262 2..619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17262.1.1

>prot_P-wetherbeei_contig17262.1.1 ID=prot_P-wetherbeei_contig17262.1.1|Name=mRNA_P-wetherbeei_contig17262.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=206bp
TACFEGVKDIAHDLRLHDSVAKDAIRLLKIADDENIFKRKAGASGDAMCG
AALYLVCKQQGASRTFHEMSHAAGVPQGDITKRLRLLQKNDKLSEFAGGV
VRPEHLVPRFCSLLDFQQWVSAAALHVAQKAGELHLNSGQQPQAMAAAAL
LLSAGAFGMLAGRSAKEVAEVTKAVADVCGAKPRTVSKGYAALYPHRYSL
LSEGVK
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mRNA from alignment at P-wetherbeei_contig17262:2..619+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17262.1.1 ID=mRNA_P-wetherbeei_contig17262.1.1|Name=mRNA_P-wetherbeei_contig17262.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=618bp|location=Sequence derived from alignment at P-wetherbeei_contig17262:2..619+ (Phaeothamnion wetherbeei SAG_119_79)
ACTGCGTGCTTCGAGGGCGTGAAGGACATCGCGCACGACCTCCGGCTGCA
CGACAGCGTCGCCAAGGACGCCATCCGCCTGCTCAAGATTGCCGACGACG
AAAATATCTTCAAGCGCAAAGCGGGCGCCAGCGGCGACGCCATGTGCGGC
GCGGCGCTCTACCTGGTCTGCAAGCAGCAGGGCGCCTCGCGGACGTTCCA
CGAAATGTCGCATGCCGCCGGCGTCCCCCAGGGCGACATCACCAAGCGTC
TCAGGCTCCTCCAAAAGAACGATAAGCTCTCCGAGTTCGCCGGCGGCGTC
GTGCGCCCTGAGCACCTGGTCCCACGCTTCTGCAGCCTGCTCGACTTCCA
GCAGTGGGTCTCGGCGGCAGCACTTCACGTCGCCCAAAAGGCCGGCGAGC
TCCACCTCAACTCCGGCCAGCAGCCGCAGGCCATGGCGGCGGCGGCGCTC
CTGCTGAGCGCCGGCGCCTTCGGCATGCTGGCGGGGCGGAGCGCCAAGGA
GGTGGCGGAGGTGACAAAGGCGGTGGCGGACGTGTGCGGCGCCAAGCCGC
GCACCGTCAGCAAGGGCTATGCAGCGCTCTACCCGCACCGCTACTCGCTC
CTCTCCGAGGGCGTCAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17262:2..619+

>mRNA_P-wetherbeei_contig17262.1.1 ID=mRNA_P-wetherbeei_contig17262.1.1|Name=mRNA_P-wetherbeei_contig17262.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=618bp|location=Sequence derived from alignment at P-wetherbeei_contig17262:2..619+ (Phaeothamnion wetherbeei SAG_119_79)
ACTGCGTGCTTCGAGGGCGTGAAGGACATCGCGCACGACCTCCGGCTGCA
CGACAGCGTCGCCAAGGACGCCATCCGCCTGCTCAAGATTGCCGACGACG
AAAATATCTTCAAGCGCAAAGCGGGCGCCAGCGGCGACGCCATGTGCGGC
GCGGCGCTCTACCTGGTCTGCAAGCAGCAGGGCGCCTCGCGGACGTTCCA
CGAAATGTCGCATGCCGCCGGCGTCCCCCAGGGCGACATCACCAAGCGTC
TCAGGCTCCTCCAAAAGAACGATAAGCTCTCCGAGTTCGCCGGCGGCGTC
GTGCGCCCTGAGCACCTGGTCCCACGCTTCTGCAGCCTGCTCGACTTCCA
GCAGTGGGTCTCGGCGGCAGCACTTCACGTCGCCCAAAAGGCCGGCGAGC
TCCACCTCAACTCCGGCCAGCAGCCGCAGGCCATGGCGGCGGCGGCGCTC
CTGCTGAGCGCCGGCGCCTTCGGCATGCTGGCGGGGCGGAGCGCCAAGGA
GGTGGCGGAGGTGACAAAGGCGGTGGCGGACGTGTGCGGCGCCAAGCCGC
GCACCGTCAGCAAGGGCTATGCAGCGCTCTACCCGCACCGCTACTCGCTC
CTCTCCGAGGGCGTCAAG
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