mRNA_P-wetherbeei_contig1725.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1725.1.1
Unique NamemRNA_P-wetherbeei_contig1725.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1725.1.1 vs. uniprot
Match: D7FUV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUV8_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 5.190e-11
Identity = 45/100 (45.00%), Postives = 54/100 (54.00%), Query Frame = 1 
Query:   49 SLHAEITAIERQIFELETSYLEETRLYGNVIHGWDPQAPT---GAAAGKAATAAAPAK---RKRD------------------ESDERLFSMSSVTSPAA 276
            S+H  +   E+QIF+LE SYLEETRLYGNV+ GWD    T   G A G    AAA  +    KR+                  E +ERLFS+ SVTSPAA
Sbjct:   38 SVHERLVQTEKQIFDLERSYLEETRLYGNVLQGWDAYLDTKGKGVADGGKGEAAAGGRGGGNKREAASEGEEGEGANKRAKGVELEERLFSLGSVTSPAA 137
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BLAST of mRNA_P-wetherbeei_contig1725.1.1 vs. uniprot
Match: W2SJL3_NECAM (Chromatin modification-related protein MEAF6 n=1 Tax=Necator americanus TaxID=51031 RepID=W2SJL3_NECAM)

HSP 1 Score: 62.4 bits (150), Expect = 2.590e-10
Identity = 45/99 (45.45%), Postives = 54/99 (54.55%), Query Frame = 1 
Query:    1 DQSHLPPRLPTAIAGRSLHAE-ITAIERQIFELETSYLEETRLYGNVIHGWD------PQAPTGAAAGKAATAAAPAKRKRDESDERLFSMSSVTSPAA 276
            DQ  L   L   I  R+  AE + A+E QI+  E SYLEET  YGNVI GWD      P + +G    K   +     RK D+  +RLFS SSVTSPAA
Sbjct:    4 DQHDLKRELNDLIKKRAEIAETLEALENQIYNFEGSYLEETAEYGNVIKGWDRYALAMPPSKSGVKLDKKGLS-----RKADKDADRLFSYSSVTSPAA 97
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BLAST of mRNA_P-wetherbeei_contig1725.1.1 vs. uniprot
Match: A0A7I4Z5B6_HAECO (Chromatin modification-related protein MEAF6 n=2 Tax=Strongylida TaxID=6308 RepID=A0A7I4Z5B6_HAECO)

HSP 1 Score: 62.4 bits (150), Expect = 2.930e-10
Identity = 45/99 (45.45%), Postives = 54/99 (54.55%), Query Frame = 1 
Query:    1 DQSHLPPRLPTAIAGRSLHAE-ITAIERQIFELETSYLEETRLYGNVIHGWD------PQAPTGAAAGKAATAAAPAKRKRDESDERLFSMSSVTSPAA 276
            DQ  L   L   I  R+  AE + A+E QI+  E SYLEET  YGNVI GWD      P + +G    K   +     RK D+  +RLFS SSVTSPAA
Sbjct:    4 DQHDLKRELNELIKKRAEIAETLEALENQIYNFEGSYLEETAEYGNVIKGWDRYALAMPPSKSGVKLDKKTLS-----RKADKEADRLFSYSSVTSPAA 97
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BLAST of mRNA_P-wetherbeei_contig1725.1.1 vs. uniprot
Match: A0A0N4W403_HAEPC (Chromatin modification-related protein MEAF6 n=2 Tax=Trichostrongyloidea TaxID=6314 RepID=A0A0N4W403_HAEPC)

HSP 1 Score: 62.0 bits (149), Expect = 4.130e-10
Identity = 45/99 (45.45%), Postives = 53/99 (53.54%), Query Frame = 1 
Query:    1 DQSHLPPRLPTAIAGRSLHAE-ITAIERQIFELETSYLEETRLYGNVIHGWD------PQAPTGAAAGKAATAAAPAKRKRDESDERLFSMSSVTSPAA 276
            DQ  L   L   I  R+  AE + A+E QI+  E SYLEET  YGNVI GWD      P + +G    K   +     RK D   +RLFS SSVTSPAA
Sbjct:    4 DQHDLKRELNELIKKRAEIAETLEALENQIYNFEGSYLEETAEYGNVIKGWDRYALAMPPSKSGVKLDKKTLS-----RKADREADRLFSYSSVTSPAA 97
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BLAST of mRNA_P-wetherbeei_contig1725.1.1 vs. uniprot
Match: A0A4D9CUA4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUA4_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.060e-9
Identity = 35/73 (47.95%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:   52 LHAEITAIERQIFELETSYLEETRLYGNVIHGWDPQAPTGAAAGKAATAAAPAKRKRDESDERLFSMSSVTSP 270
            L AE+  IERQIF+LE SYL++T   GN++ GWD     G+ +  +A       RK    D RLFS+SSVTSP
Sbjct:   15 LKAELQNIERQIFDLEGSYLDDTLTTGNILRGWDAALTNGSTSAASAVKGKQGARKLQRED-RLFSLSSVTSP 86
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BLAST of mRNA_P-wetherbeei_contig1725.1.1 vs. uniprot
Match: A0A016WE95_9BILA (COP9 signalosome complex subunit 2 n=6 Tax=Strongylida TaxID=6308 RepID=A0A016WE95_9BILA)

HSP 1 Score: 61.6 bits (148), Expect = 4.690e-9
Identity = 45/99 (45.45%), Postives = 53/99 (53.54%), Query Frame = 1 
Query:    1 DQSHLPPRLPTAIAGRSLHAE-ITAIERQIFELETSYLEETRLYGNVIHGWD------PQAPTGAAAGKAATAAAPAKRKRDESDERLFSMSSVTSPAA 276
            DQ  L   L   I  R+  AE + A+E QI+  E SYLEET  YGNVI GWD      P + +G    K         RK D+  +RLFS SSVTSPAA
Sbjct:  441 DQHDLKRELNELIKKRAEIAETLEALENQIYNFEGSYLEETAEYGNVIKGWDRYALAMPPSKSGVKLDKKGVT-----RKVDKDADRLFSYSSVTSPAA 534
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BLAST of mRNA_P-wetherbeei_contig1725.1.1 vs. uniprot
Match: A0A2G9TTB6_TELCI (Chromatin modification-related protein MEAF6 n=1 Tax=Teladorsagia circumcincta TaxID=45464 RepID=A0A2G9TTB6_TELCI)

HSP 1 Score: 58.9 bits (141), Expect = 6.290e-9
Identity = 37/77 (48.05%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:   64 ITAIERQIFELETSYLEETRLYGNVIHGWD------PQAPTGAAAGKAATAAAPAKRKRDESDERLFSMSSVTSPAA 276
            + A+E QI+  E SYLEET  YGNVI GWD      P + +G    K   +     RK D   +RLFS SSVTSPAA
Sbjct:   26 LEALENQIYNFEGSYLEETAEYGNVIKGWDRYALAMPPSKSGVKLEKKTLS-----RKTDREADRLFSYSSVTSPAA 97
[Close]
BLAST of mRNA_P-wetherbeei_contig1725.1.1 vs. uniprot
Match: A0A2A2JE31_9BILA (Chromatin modification-related protein MEAF6 n=1 Tax=Diploscapter pachys TaxID=2018661 RepID=A0A2A2JE31_9BILA)

HSP 1 Score: 58.5 bits (140), Expect = 8.040e-9
Identity = 45/104 (43.27%), Postives = 53/104 (50.96%), Query Frame = 1 
Query:    1 DQSHLPPRLPTAIAGRSLHAE-ITAIERQIFELETSYLEETRLYGNVIHGWDPQAPTGAAAGKAATAAAPAK-----------RKRDESDERLFSMSSVTSPAA 276
            DQ  L   L   I  R+  AE + A+E QI+  E SYLEET  YGNVI GW+  A           AA P+K           RK  +  +RLFS SSVTSPAA
Sbjct:    4 DQQDLKKELHELIKKRAEIAETLEALETQIYNFEGSYLEETAEYGNVIRGWNHYA----------LAAPPSKSQPIRLEKKSGRKGPKDSDRLFSYSSVTSPAA 97
[Close]
BLAST of mRNA_P-wetherbeei_contig1725.1.1 vs. uniprot
Match: A0A022PPS1_ERYGU (Uncharacterized protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022PPS1_ERYGU)

HSP 1 Score: 58.2 bits (139), Expect = 1.550e-8
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 1 
Query:   52 LHAEITAIERQIFELETSYLEETRLYGNVIHGWDPQAPTGAAAGKAATAAAPAKRKRDESDERLFSMSSVTSPAA 276
            LH E+ ++E Q++ELETSYL+ET  +GNV+ G+D     G  +    T      RK  + ++R+FS+SSVTSPAA
Sbjct:   26 LHNELRSVENQVYELETSYLQETNTFGNVLKGFD-----GFLSSSKNTTNLKRSRKF-QIEDRVFSLSSVTSPAA 94
[Close]
BLAST of mRNA_P-wetherbeei_contig1725.1.1 vs. uniprot
Match: A0A6H5KBZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ7_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.810e-8
Identity = 31/55 (56.36%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:   49 SLHAEITAIERQIFELETSYLEETRLYGNVIHGWDPQAPT---GAAAGKAATAAA 204
            S+H  +   E+QIF+LE SYLEETRLYGNV+ GWD    T   G AAG    AAA
Sbjct:   38 SVHERLVQTEKQIFDLERSYLEETRLYGNVLQGWDAYLDTKGKGVAAGGKGEAAA 92
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1725.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUV8_ECTSI5.190e-1145.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W2SJL3_NECAM2.590e-1045.45Chromatin modification-related protein MEAF6 n=1 T... [more]
A0A7I4Z5B6_HAECO2.930e-1045.45Chromatin modification-related protein MEAF6 n=2 T... [more]
A0A0N4W403_HAEPC4.130e-1045.45Chromatin modification-related protein MEAF6 n=2 T... [more]
A0A4D9CUA4_9STRA1.060e-947.95Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A016WE95_9BILA4.690e-945.45COP9 signalosome complex subunit 2 n=6 Tax=Strongy... [more]
A0A2G9TTB6_TELCI6.290e-948.05Chromatin modification-related protein MEAF6 n=1 T... [more]
A0A2A2JE31_9BILA8.040e-943.27Chromatin modification-related protein MEAF6 n=1 T... [more]
A0A022PPS1_ERYGU1.550e-845.33Uncharacterized protein n=1 Tax=Erythranthe guttat... [more]
A0A6H5KBZ7_9PHAE1.810e-856.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1725contigP-wetherbeei_contig1725:4467..4880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog10036.XP_005084451.1
Preferred nameMEAF6
PFAMsNuA4
Model size276
Max annot lvl33208|Metazoa
KEGG koko:K11344
Hectar predicted targeting categoryother localisation
GOsGO:0000123,GO:0000775,GO:0000776,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006325,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009966,GO:0009987,GO:0010646,GO:0016043,GO:0016569,GO:0016570,GO:0016573,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019538,GO:0023051,GO:0031248,GO:0031974,GO:0031981,GO:0032991,GO:0035267,GO:0036211,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043966,GO:0043967,GO:0043968,GO:0043981,GO:0043982,GO:0043983,GO:0044154,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0051276,GO:0051726,GO:0065007,GO:0070013,GO:0070775,GO:0070776,GO:0071704,GO:0071840,GO:0098687,GO:1901564,GO:1901796,GO:1902493,GO:1902494,GO:1902531,GO:1902562,GO:1990234
Exons2
Evalue3.31e-09
EggNOG OGsKOG3856@1|root,KOG3856@2759|Eukaryota,39U1C@33154|Opisthokonta,3BEQC@33208|Metazoa,3CVKX@33213|Bilateria,4876F@7711|Chordata,4945P@7742|Vertebrata,3JCCU@40674|Mammalia,35MJ8@314146|Euarchontoglires,4Q7NT@9989|Rodentia
Ec32 ortholog descriptionEaf6 NuA4 complex protein
Ec32 orthologEc-26_004380.1
DescriptionHistone acetyltransferase subunit NuA4
Cds size276
COG categoryK
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186111.8739717-CDS-P-wetherbeei_contig1725:4466..46281683186111.8739717-CDS-P-wetherbeei_contig1725:4466..4628Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1725 4467..4628 +
1683186111.8859072-CDS-P-wetherbeei_contig1725:4766..48801683186111.8859072-CDS-P-wetherbeei_contig1725:4766..4880Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1725 4767..4880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1725.1.1prot_P-wetherbeei_contig1725.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1725 4467..4880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1725.1.1

>prot_P-wetherbeei_contig1725.1.1 ID=prot_P-wetherbeei_contig1725.1.1|Name=mRNA_P-wetherbeei_contig1725.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
DQSHLPPRLPTAIAGRSLHAEITAIERQIFELETSYLEETRLYGNVIHGW
DPQAPTGAAAGKAATAAAPAKRKRDESDERLFSMSSVTSPAA
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mRNA from alignment at P-wetherbeei_contig1725:4467..4880+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1725.1.1 ID=mRNA_P-wetherbeei_contig1725.1.1|Name=mRNA_P-wetherbeei_contig1725.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig1725:4467..4880+ (Phaeothamnion wetherbeei SAG_119_79)
GACCAATCGCACTTGCCGCCCCGTCTCCCTACCGCCATCGCGGGACGCAG
TTTACACGCCGAGATCACCGCGATCGAGAGGCAGATCTTCGAGCTGGAAA
CGAGCTACCTCGAGGAGACGCGGTTGTACGGGAACGTGATCCACGGATGG
GACCCGCAAGCTGTGTCGAGGTGAGAAAAAAGGTTTATGGGGACTTTTCA
CCAGTCCTGACAGTTTCAGTAATGAAGAGCCTGCCCTGATGCGCAGTCTG
AGTTGTAGAAGTCGGTCACTTCAAACAGGAACCATCAAGTGGATACGGAG
CCTACCGGCGCAGCAGCAGGAAAAGCAGCCACCGCCGCTGCCCCTGCGAA
ACGAAAGCGCGACGAGTCGGATGAAAGGCTCTTCAGCATGTCTTCGGTGA
CGTCGCCCGCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1725:4467..4880+

>mRNA_P-wetherbeei_contig1725.1.1 ID=mRNA_P-wetherbeei_contig1725.1.1|Name=mRNA_P-wetherbeei_contig1725.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig1725:4467..4880+ (Phaeothamnion wetherbeei SAG_119_79)
GACCAATCGCACTTGCCGCCCCGTCTCCCTACCGCCATCGCGGGACGCAG
TTTACACGCCGAGATCACCGCGATCGAGAGGCAGATCTTCGAGCTGGAAA
CGAGCTACCTCGAGGAGACGCGGTTGTACGGGAACGTGATCCACGGATGG
GACCCGCAAGCTCCTACCGGCGCAGCAGCAGGAAAAGCAGCCACCGCCGC
TGCCCCTGCGAAACGAAAGCGCGACGAGTCGGATGAAAGGCTCTTCAGCA
TGTCTTCGGTGACGTCGCCCGCCGCC
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