mRNA_P-wetherbeei_contig17248.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17248.1.1
Unique NamemRNA_P-wetherbeei_contig17248.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17248.1.1 vs. uniprot
Match: A0A836C844_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C844_9STRA)

HSP 1 Score: 248 bits (632), Expect = 5.610e-82
Identity = 107/153 (69.93%), Postives = 130/153 (84.97%), Query Frame = 1
Query:   10 WGPEEDDRLRQAIEQNGARNWKQVAELVGPNRTDVQCLHRWNKVVKPGLCKGPWTDAEDAVVRECVEVVGEGTVRWSSIAARLPGRIGKQCRERWFNHLDPSVRKGDWAPEEDATVFVAQMHLGNRWCEIAKLLPGRTENAVKNRFNSSARKR 468
            W P+ED RLR A++++G R+W+ +AE VG  RTD+QCLHRWNKV++PGL KGPWT+ ED VVRE VE VG   V+WS++AA+LPGRIGKQCRERWFNHLDP++++  W PEED  VF AQ+ LGNRWCEIAKLLPGRTENAVKNRFNSSA+K+
Sbjct:    4 WAPDEDARLRDAVDRHGPRSWRAIAEDVGGARTDMQCLHRWNKVLRPGLHKGPWTETEDRVVRESVEAVGIAKVKWSAVAAKLPGRIGKQCRERWFNHLDPAIKRSPWTPEEDTVVFEAQLRLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK 156          
BLAST of mRNA_P-wetherbeei_contig17248.1.1 vs. uniprot
Match: A0A7S2BQG7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQG7_9STRA)

HSP 1 Score: 246 bits (628), Expect = 2.990e-81
Identity = 108/157 (68.79%), Postives = 130/157 (82.80%), Query Frame = 1
Query:    1 GCKWGPEEDDRLRQAIEQNGARNWKQVAELVGPNRTDVQCLHRWNKVVKPGLCKGPWTDAEDAVVRECVEVVGEGTVRWSSIAARLPGRIGKQCRERWFNHLDPSVRKGDWAPEEDATVFVAQMHLGNRWCEIAKLLPGRTENAVKNRFNSSARKRW 471
            G KW  EED  LR  +EQ+GA+NW++VAEL+G  RTDVQCLHRWNKV++PGL KGPWT+ ED +VR+ V + G G V+WS+IAA+L GRIGKQCRERWFNHLDP++ KG+W PEED  VF AQ   GNRW +IAKLLPGRTEN+VKNR+NSSARK+W
Sbjct:    6 GGKWTKEEDASLRVIVEQHGAKNWRKVAELLGDTRTDVQCLHRWNKVLRPGLHKGPWTEEEDGIVRDMVLMYGAGKVKWSAIAAKLHGRIGKQCRERWFNHLDPNINKGEWTPEEDRIVFEAQNQFGNRWSDIAKLLPGRTENSVKNRWNSSARKKW 162          
BLAST of mRNA_P-wetherbeei_contig17248.1.1 vs. uniprot
Match: A0A7S2R561_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R561_9STRA)

HSP 1 Score: 259 bits (662), Expect = 2.480e-80
Identity = 114/160 (71.25%), Postives = 135/160 (84.38%), Query Frame = 1
Query:    1 GCKWGPEEDDRLRQAIEQNGARNWKQVAELVGPNRTDVQCLHRWNKVVKPGLCKGPWTDAEDAVVRECVEVVGEGTVRWSSIAARLPGRIGKQCRERWFNHLDPSVRKGDWAPEEDATVFVAQMHLGNRWCEIAKLLPGRTENAVKNRFNSSARKRWQAE 480
            G KW  EEDD+LR  +EQ+GA+NWK+VAEL+GP R+DVQCLHRWNKV++PGL KGPWT+ ED +V + V   G G ++WS IAA LPGRIGKQCRERWFNHLDPS++KG+W PEED  +F AQ+ +GNRWCEIAKLLPGRTENAVKNR+NSSARKRW  E
Sbjct:  146 GGKWSREEDDKLRAIVEQHGAKNWKKVAELLGPVRSDVQCLHRWNKVLRPGLHKGPWTEDEDRIVSDMVLAHGVGNIKWSVIAAELPGRIGKQCRERWFNHLDPSIKKGEWTPEEDKVLFEAQLVVGNRWCEIAKLLPGRTENAVKNRWNSSARKRWLQE 305          
BLAST of mRNA_P-wetherbeei_contig17248.1.1 vs. uniprot
Match: D7FRA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRA0_ECTSI)

HSP 1 Score: 261 bits (668), Expect = 1.210e-79
Identity = 114/157 (72.61%), Postives = 135/157 (85.99%), Query Frame = 1
Query:    1 GCKWGPEEDDRLRQAIEQNGARNWKQVAELVGPNRTDVQCLHRWNKVVKPGLCKGPWTDAEDAVVRECVEVVGEGTVRWSSIAARLPGRIGKQCRERWFNHLDPSVRKGDWAPEEDATVFVAQMHLGNRWCEIAKLLPGRTENAVKNRFNSSARKRW 471
            G KW  EED RLR+ +E +GARNW+ VAE +G  R+DVQCLHRWNKV++PGL KGPWT+ ED++VRECVE  G   V+WS +A+RLPGRIGKQCRERWFNHLDPS++KG+W+PEED  VF AQ ++GNRWCEIAKLLPGRTENAVKNRFNSSARK+W
Sbjct:   94 GGKWTKEEDTRLREIVEHHGARNWRMVAEQLGTLRSDVQCLHRWNKVLRPGLHKGPWTEEEDSIVRECVEHSGAQKVKWSVVASRLPGRIGKQCRERWFNHLDPSIKKGEWSPEEDRIVFGAQAYMGNRWCEIAKLLPGRTENAVKNRFNSSARKKW 250          
BLAST of mRNA_P-wetherbeei_contig17248.1.1 vs. uniprot
Match: A0A7S1GEG8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GEG8_9STRA)

HSP 1 Score: 239 bits (609), Expect = 9.500e-78
Identity = 105/157 (66.88%), Postives = 124/157 (78.98%), Query Frame = 1
Query:    1 GCKWGPEEDDRLRQAIEQNGARNWKQVAELVGPNRTDVQCLHRWNKVVKPGLCKGPWTDAEDAVVRECVEVVGEGTVRWSSIAARLPGRIGKQCRERWFNHLDPSVRKGDWAPEEDATVFVAQMHLGNRWCEIAKLLPGRTENAVKNRFNSSARKRW 471
            G  W   ED  LR A+E +G RNWK++AE +G  RTDVQCLHRWNKV+KPGL KGPW   ED VVR+ V   G G VRWS IA++LPGRIGKQCRERWFNHLDP+++KG W  EED  +F AQ  +GN+WCEIA++LPGRTENAVKNR+NSSAR+RW
Sbjct:   11 GGNWTAAEDAELRVAVEAHGGRNWKRIAETLGHGRTDVQCLHRWNKVLKPGLVKGPWLKEEDDVVRDMVMKYGVGQVRWSVIASKLPGRIGKQCRERWFNHLDPAIKKGGWMEEEDLLIFQAQREVGNKWCEIARMLPGRTENAVKNRWNSSARRRW 167          
BLAST of mRNA_P-wetherbeei_contig17248.1.1 vs. uniprot
Match: F0Y9B4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9B4_AURAN)

HSP 1 Score: 233 bits (593), Expect = 4.580e-76
Identity = 105/154 (68.18%), Postives = 125/154 (81.17%), Query Frame = 1
Query:    7 KWGPEEDDRLRQAIEQNGARNWKQVAELVGPNRTDVQCLHRWNKVVKPGLCKGPWTDAEDAVVRECVEVVGEGTVRWSSIAARLPGRIGKQCRERWFNHLDPSVRKGDWAPEEDATVFVAQMHLGNRWCEIAKLLPGRTENAVKNRFNSSARKR 468
            KW  EED+RLR+ +E  GA+NWK++A L+G  R+DVQCLHRWNKV++PGL KGPWT  ED +V++ V   G G ++WS IAA+LPGRIGKQCRERWFNHLDP ++KGDW PEED  +F  Q   GNRW EIAKLLPGRTENAVKNR+NSSARKR
Sbjct:    1 KWTEEEDNRLREIVETFGAKNWKRLAMLLGNVRSDVQCLHRWNKVLRPGLSKGPWTADEDKIVKDMVLRHGAGNIKWSVIAAQLPGRIGKQCRERWFNHLDPEIKKGDWTPEEDNILFETQRVHGNRWSEIAKLLPGRTENAVKNRWNSSARKR 154          
BLAST of mRNA_P-wetherbeei_contig17248.1.1 vs. uniprot
Match: A0A8J2X3E5_9STRA (Hypothetical protein n=4 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X3E5_9STRA)

HSP 1 Score: 244 bits (623), Expect = 2.080e-75
Identity = 111/161 (68.94%), Postives = 130/161 (80.75%), Query Frame = 1
Query:    1 GCKWGPEEDDRLRQAIEQNGARNWKQVAELVGPNRTDVQCLHRWNKVVKPGLCKGPWTDAEDAVVRECVEVVGEGTVRWSSIAARLPGRIGKQCRERWFNHLDPSVRKGDWAPEEDATVFVAQMHLGNRWCEIAKLLPGRTENAVKNRFNSSARKRWQAER 483
            G KW  EED RLR+ +E  GA+NWK++A L+G  R+DVQCLHRWNKV++PGL KGPWT AED VVR+ V   G G ++WS IAA+LPGRIGKQCRERWFNHLDP ++KGDW P+EDA +F  Q   GNRW EIAKLLPGRTENAVKNR+NSSARKRW  +R
Sbjct:   95 GGKWTEEEDRRLREIVETFGAKNWKRLAMLLGTVRSDVQCLHRWNKVLRPGLSKGPWTAAEDRVVRDMVLRHGAGNIKWSVIAAQLPGRIGKQCRERWFNHLDPDIKKGDWTPDEDAVLFETQRVHGNRWSEIAKLLPGRTENAVKNRWNSSARKRWLRDR 255          
BLAST of mRNA_P-wetherbeei_contig17248.1.1 vs. uniprot
Match: A0A835YLN0_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLN0_9STRA)

HSP 1 Score: 234 bits (598), Expect = 7.760e-75
Identity = 108/168 (64.29%), Postives = 130/168 (77.38%), Query Frame = 1
Query:   10 WGPEEDDRLRQAIEQNGARNWKQVAELVG-------PNRTDVQCLHRWNKVVKPGLCKGPWTDAEDAVVRECVEVVGEGTVRWSSIAARLPGRIGKQCRERWFNHLDPSVRKGDWAPEEDATVFVAQMHLGNRWCEIAKLLPGRTENAVKNRFNSSARKRWQAERAAA 492
            W  EED RLR  ++++G+RNWK VA+ +        P RTDVQCL+RW K ++PGL KG WT+AED VVRE VE  G   V+WS+IAARLPGRIGKQCRERWFNHLDP++++  W PEED  +F AQ  LGNRWCEIAKLLPGRTENAVKNRFNSSA+K+W ++  AA
Sbjct:   36 WTSEEDARLRAVVDKHGSRNWKLVADELAQAQPHAQPPRTDVQCLNRWKKTLRPGLHKGAWTEAEDRVVRESVEECGIAKVKWSTIAARLPGRIGKQCRERWFNHLDPALKRSTWTPEEDTVIFEAQARLGNRWCEIAKLLPGRTENAVKNRFNSSAQKKWVSKNGAA 203          
BLAST of mRNA_P-wetherbeei_contig17248.1.1 vs. uniprot
Match: A0A6U4HUA2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4HUA2_9STRA)

HSP 1 Score: 243 bits (621), Expect = 2.230e-74
Identity = 111/163 (68.10%), Postives = 129/163 (79.14%), Query Frame = 1
Query:    1 GCKWGPEEDDRLRQAIEQNGARNWKQVAELVGPNRTDVQCLHRWNKVVKPGLCKGPWTDAEDAVVRECVEVVGEGTVRWSSIAARLPGRIGKQCRERWFNHLDPSVRKGDWAPEEDATVFVAQMHLGNRWCEIAKLLPGRTENAVKNRFNSSARKRWQAERAA 489
            G KW  EED RL+  ++++GA+NWK++AEL+G  R+DVQCLHRWNKV+KPGL KGPW  AED VVR+ V   G G V+WS IAA LPGRIGKQCRERWFNHLDPS+ K  W  EED  +F AQ   GNRWCEIAKLLPGRTEN VKNR+NSSARK+W A+R A
Sbjct:  241 GGKWSKEEDARLKGIVQEHGAKNWKKIAELLGHTRSDVQCLHRWNKVLKPGLHKGPWQAAEDEVVRDMVIRHGVGKVKWSDIAALLPGRIGKQCRERWFNHLDPSISKAPWTEEEDTIIFEAQQIFGNRWCEIAKLLPGRTENMVKNRWNSSARKKWFADRKA 403          
BLAST of mRNA_P-wetherbeei_contig17248.1.1 vs. uniprot
Match: A0A8K1CPZ0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPZ0_PYTOL)

HSP 1 Score: 238 bits (606), Expect = 1.490e-72
Identity = 105/165 (63.64%), Postives = 126/165 (76.36%), Query Frame = 1
Query:    7 KWGPEEDDRLRQAIEQNGARNWKQVAELVGPNRTDVQCLHRWNKVVKPGLCKGPWTDAEDAVVRECVEVVGEGTVRWSSIAARLPGRIGKQCRERWFNHLDPSVRKGDWAPEEDATVFVAQMHLGNRWCEIAKLLPGRTENAVKNRFNSSARKRWQAERAAAAVA 501
            +W  EED+RLR A+++ G +NWK +AE +G  RTDVQCLHRWNKV+KPGL KGPWT  ED ++ + +   G G +RW  IA  LPGRIGKQCRERW NHLD S+RKG W PEED TVF  Q  LGN+W EIAK+LPGRTENAVKNRFNS+AR++W   +AA A A
Sbjct:  212 RWSREEDERLRDAVQRFGGKNWKMIAETLGRGRTDVQCLHRWNKVLKPGLVKGPWTPEEDQILTDLIARYGVGKIRWCDIALHLPGRIGKQCRERWCNHLDASIRKGQWTPEEDDTVFRLQQQLGNKWSEIAKMLPGRTENAVKNRFNSAARRKWLMAQAAKATA 376          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17248.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C844_9STRA5.610e-8269.93Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A7S2BQG7_9STRA2.990e-8168.79Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2R561_9STRA2.480e-8071.25Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D7FRA0_ECTSI1.210e-7972.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1GEG8_9STRA9.500e-7866.88Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
F0Y9B4_AURAN4.580e-7668.18Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A8J2X3E5_9STRA2.080e-7568.94Hypothetical protein n=4 Tax=Pelagomonas calceolat... [more]
A0A835YLN0_9STRA7.760e-7564.29Homeodomain-like protein n=1 Tax=Tribonema minus T... [more]
A0A6U4HUA2_9STRA2.230e-7468.10Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A8K1CPZ0_PYTOL1.490e-7263.64Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17248contigP-wetherbeei_contig17248:586..1357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FRA0
PFAMsMyb_DNA-binding
Model size501
Max annot lvl2759|Eukaryota
KEGG koko:K21769
KEGG Pathwayko04218,ko05166,map04218,map05166
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.98e-80
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-26_002380.1
DescriptionRNA polymerase II transcription regulator recruiting activity
Cds size501
COG categoryADK
BRITEko00000,ko00001,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186111.8321054-CDS-P-wetherbeei_contig17248:585..7231683186111.8321054-CDS-P-wetherbeei_contig17248:585..723Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17248 586..723 +
1683186111.844101-CDS-P-wetherbeei_contig17248:994..13571683186111.844101-CDS-P-wetherbeei_contig17248:994..1357Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17248 995..1357 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17248.1.1prot_P-wetherbeei_contig17248.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17248 586..1357 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17248.1.1

>prot_P-wetherbeei_contig17248.1.1 ID=prot_P-wetherbeei_contig17248.1.1|Name=mRNA_P-wetherbeei_contig17248.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=167bp
GCKWGPEEDDRLRQAIEQNGARNWKQVAELVGPNRTDVQCLHRWNKVVKP
GLCKGPWTDAEDAVVRECVEVVGEGTVRWSSIAARLPGRIGKQCRERWFN
HLDPSVRKGDWAPEEDATVFVAQMHLGNRWCEIAKLLPGRTENAVKNRFN
SSARKRWQAERAAAAVA
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mRNA from alignment at P-wetherbeei_contig17248:586..1357+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17248.1.1 ID=mRNA_P-wetherbeei_contig17248.1.1|Name=mRNA_P-wetherbeei_contig17248.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=772bp|location=Sequence derived from alignment at P-wetherbeei_contig17248:586..1357+ (Phaeothamnion wetherbeei SAG_119_79)
GGCTGCAAGTGGGGGCCAGAAGAGGACGACCGGCTGCGGCAGGCGATCGA ACAGAACGGCGCGCGTAACTGGAAGCAGGTGGCGGAGCTCGTCGGGCCCA ACCGCACCGACGTCCAGTGCCTCCACCGCTGGAACAAGGTGAGCAGCCAG GCCACTTGATTCAATTGAGAGGTTGGGATGGCTGCTTAAAGGTTGGACAA GGCAAGATGGTGGTGAGGCCTTGACGCTTTACAACTGTGAACTAATGTTT CTCAACTCCTCGCGTCGCTTGGCCCATCAGTATCATTCCTTCGCGCGTTG AAATCAGGGCTTGCCTGTCCACTTGGGTGTATGTGTCTAATGCTTTCTTT TCTTCTGCCGTCGTTTTTTCGTCGGCTCTGGCAATGGGGGCGAATTGGCG AGGGCACAGGTGGTGAAGCCGGGGCTGTGCAAGGGCCCGTGGACGGATGC GGAGGACGCGGTGGTGCGGGAGTGCGTCGAGGTGGTGGGCGAGGGCACCG TCCGCTGGAGCTCCATCGCGGCACGGCTGCCGGGCCGCATCGGCAAGCAG TGCCGTGAGCGCTGGTTCAACCACCTCGACCCCAGCGTCCGCAAGGGGGA CTGGGCGCCAGAGGAGGACGCTACGGTCTTTGTGGCCCAGATGCACCTCG GCAACCGCTGGTGCGAGATCGCGAAGCTGCTGCCAGGCCGCACGGAGAAC GCCGTCAAGAACCGTTTCAACAGCTCGGCGCGTAAACGCTGGCAGGCGGA ACGCGCGGCGGCTGCCGTGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17248:586..1357+

>mRNA_P-wetherbeei_contig17248.1.1 ID=mRNA_P-wetherbeei_contig17248.1.1|Name=mRNA_P-wetherbeei_contig17248.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig17248:586..1357+ (Phaeothamnion wetherbeei SAG_119_79)
GGCTGCAAGTGGGGGCCAGAAGAGGACGACCGGCTGCGGCAGGCGATCGA
ACAGAACGGCGCGCGTAACTGGAAGCAGGTGGCGGAGCTCGTCGGGCCCA
ACCGCACCGACGTCCAGTGCCTCCACCGCTGGAACAAGGTGGTGAAGCCG
GGGCTGTGCAAGGGCCCGTGGACGGATGCGGAGGACGCGGTGGTGCGGGA
GTGCGTCGAGGTGGTGGGCGAGGGCACCGTCCGCTGGAGCTCCATCGCGG
CACGGCTGCCGGGCCGCATCGGCAAGCAGTGCCGTGAGCGCTGGTTCAAC
CACCTCGACCCCAGCGTCCGCAAGGGGGACTGGGCGCCAGAGGAGGACGC
TACGGTCTTTGTGGCCCAGATGCACCTCGGCAACCGCTGGTGCGAGATCG
CGAAGCTGCTGCCAGGCCGCACGGAGAACGCCGTCAAGAACCGTTTCAAC
AGCTCGGCGCGTAAACGCTGGCAGGCGGAACGCGCGGCGGCTGCCGTGGC
G
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