mRNA_P-wetherbeei_contig17243.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17243.1.1
Unique NamemRNA_P-wetherbeei_contig17243.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17243.1.1 vs. uniprot
Match: A0A1F4DTI5_9PROT (Lipopolysaccharide export system ATP-binding protein LptB n=5 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4DTI5_9PROT)

HSP 1 Score: 397 bits (1020), Expect = 1.550e-138
Identity = 199/240 (82.92%), Postives = 222/240 (92.50%), Query Frame = 1
Query:    1 MSQLRAEKLKKRYKARTVVKDVSLDVSSGEVVGLLGPNGAGKTTCFYMMVGLVAVDGGDLFLDEQALTHTPIHRRARLGLSYLPQEASIFRKLTVAENIRAVLELRELEDEEIHSQLDTLLHDLHIAHLRNSPAISLSGGERRRVEIARALATQPRFILLDEPFAGVDPIAVLDIQKIIRFLKERAIGVLITDHNVRETLGICDRAYIINDGSVLAAGKPEEIVYNESVRKVYLGEHFRL 720
            MS+L+AE+LKKRY+AR VVKDVSL+V SGEV+GLLGPNGAGKTTCFYMMVGLV  DGGDL+LD + LTH PIHRRARLGLSYLPQE SIFR+L+VA+N+RAVLEL   + ++I ++LD LLHDLHI HLR+SPA+SLSGGERRRVEIARALAT+PRFILLDEPFAG+DPIAVLDIQKII FLKER IGVLITDHNVRETLGICDRAYII+DGSVLA GKPEEIVYNE+VRKVYLGEHFRL
Sbjct:    1 MSELKAERLKKRYRARVVVKDVSLEVRSGEVIGLLGPNGAGKTTCFYMMVGLVPTDGGDLYLDGRRLTHMPIHRRARLGLSYLPQETSIFRRLSVADNVRAVLELHNDDPDQIRNKLDDLLHDLHIGHLRDSPAVSLSGGERRRVEIARALATRPRFILLDEPFAGIDPIAVLDIQKIIGFLKERGIGVLITDHNVRETLGICDRAYIISDGSVLACGKPEEIVYNENVRKVYLGEHFRL 240          
BLAST of mRNA_P-wetherbeei_contig17243.1.1 vs. uniprot
Match: A0A7V8ZNR6_9BURK (Lipopolysaccharide export system ATP-binding protein LptB n=2 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7V8ZNR6_9BURK)

HSP 1 Score: 392 bits (1006), Expect = 2.100e-136
Identity = 200/240 (83.33%), Postives = 222/240 (92.50%), Query Frame = 1
Query:    1 MSQLRAEKLKKRYKARTVVKDVSLDVSSGEVVGLLGPNGAGKTTCFYMMVGLVAVDGGDLFLDEQALTHTPIHRRARLGLSYLPQEASIFRKLTVAENIRAVLELRELEDEEIHSQLDTLLHDLHIAHLRNSPAISLSGGERRRVEIARALATQPRFILLDEPFAGVDPIAVLDIQKIIRFLKERAIGVLITDHNVRETLGICDRAYIINDGSVLAAGKPEEIVYNESVRKVYLGEHFRL 720
            MS+L+AE LKKRYK+RTVVKD+SL+V+SGEVVGLLGPNGAGKTTCFYMMVGLV +DGG LFLD+Q L   PIH+RARLGLSYLPQEASIFR+LTV+ENI AVLEL+    EE+  +LD LL DL++ HLR+SPAISLSGGERRRVEIARALATQPRFILLDEPFAGVDPIAVLDIQ+I+RFLKER IGVLITDHNVRETLGICDRAYIINDG+VLA+GKP+EIVYNESVRKVYLGEHFRL
Sbjct:    1 MSELKAEGLKKRYKSRTVVKDLSLEVASGEVVGLLGPNGAGKTTCFYMMVGLVPLDGGALFLDQQNLARMPIHKRARLGLSYLPQEASIFRRLTVSENILAVLELQNYRAEELPGKLDQLLQDLNVEHLRDSPAISLSGGERRRVEIARALATQPRFILLDEPFAGVDPIAVLDIQRIVRFLKEREIGVLITDHNVRETLGICDRAYIINDGTVLASGKPDEIVYNESVRKVYLGEHFRL 240          
BLAST of mRNA_P-wetherbeei_contig17243.1.1 vs. uniprot
Match: A0A3N5WJY6_9PROT (LPS export ABC transporter ATP-binding protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5WJY6_9PROT)

HSP 1 Score: 387 bits (995), Expect = 9.260e-135
Identity = 192/237 (81.01%), Postives = 220/237 (92.83%), Query Frame = 1
Query:   10 LRAEKLKKRYKARTVVKDVSLDVSSGEVVGLLGPNGAGKTTCFYMMVGLVAVDGGDLFLDEQALTHTPIHRRARLGLSYLPQEASIFRKLTVAENIRAVLELRELEDEEIHSQLDTLLHDLHIAHLRNSPAISLSGGERRRVEIARALATQPRFILLDEPFAGVDPIAVLDIQKIIRFLKERAIGVLITDHNVRETLGICDRAYIINDGSVLAAGKPEEIVYNESVRKVYLGEHFRL 720
            LRAE+LKK Y+ RTVVKDVS++V SGEV+GLLGPNGAGKTTCFYMMVGLVA+DGG+L+LD+  LTHTP+HRRARLGLSYLPQEASIFR+L+VA+N+RA+LEL   + + I S+LD+LL DLH+ HLR++PAISLSGGERRRVEIARALAT+PRFILLDEPFAGVDPIAV++IQKII FL+ R IGVLITDHNVRETLGICDRAYIINDG+VLA GKP+EIVYNESVRKVYLGEHFRL
Sbjct:    2 LRAERLKKHYRRRTVVKDVSMEVRSGEVIGLLGPNGAGKTTCFYMMVGLVAMDGGELYLDQMRLTHTPMHRRARLGLSYLPQEASIFRRLSVADNVRAILELYHTDSDIIESRLDSLLQDLHVGHLRDNPAISLSGGERRRVEIARALATEPRFILLDEPFAGVDPIAVIEIQKIIGFLRARGIGVLITDHNVRETLGICDRAYIINDGTVLAYGKPDEIVYNESVRKVYLGEHFRL 238          
BLAST of mRNA_P-wetherbeei_contig17243.1.1 vs. uniprot
Match: A0A1W6SLL6_9PROT (Lipopolysaccharide export system ATP-binding protein LptB n=6 Tax=Nitrosomonadaceae TaxID=206379 RepID=A0A1W6SLL6_9PROT)

HSP 1 Score: 385 bits (990), Expect = 5.750e-134
Identity = 195/240 (81.25%), Postives = 220/240 (91.67%), Query Frame = 1
Query:    1 MSQLRAEKLKKRYKARTVVKDVSLDVSSGEVVGLLGPNGAGKTTCFYMMVGLVAVDGGDLFLDEQALTHTPIHRRARLGLSYLPQEASIFRKLTVAENIRAVLELRELEDEEIHSQLDTLLHDLHIAHLRNSPAISLSGGERRRVEIARALATQPRFILLDEPFAGVDPIAVLDIQKIIRFLKERAIGVLITDHNVRETLGICDRAYIINDGSVLAAGKPEEIVYNESVRKVYLGEHFRL 720
            MS+L+A  LKKRYK+RTVV+DVSL V+SGEVVGLLGPNGAGKTTCFYMMVGLV +DGG ++LDE+ LT  PIH+RARLGLSYLPQEASIFR+L+VA+NIRAVLEL+    +E+  +LD LLHDLHI+H+R S  ISLSGGERRRVEIARALATQPRFILLDEPFAGVDPIAVLDIQKII+FLKER IGVLITDHNVRETLGICDRAYII+DG+VLA+GKP+EI+YNE VRKVYLGEHFRL
Sbjct:    1 MSELKAGNLKKRYKSRTVVQDVSLSVNSGEVVGLLGPNGAGKTTCFYMMVGLVPLDGGGIYLDERDLTQLPIHQRARLGLSYLPQEASIFRRLSVADNIRAVLELKSYTADEMQQRLDELLHDLHISHIRTSQGISLSGGERRRVEIARALATQPRFILLDEPFAGVDPIAVLDIQKIIQFLKERDIGVLITDHNVRETLGICDRAYIISDGTVLASGKPDEIIYNEDVRKVYLGEHFRL 240          
BLAST of mRNA_P-wetherbeei_contig17243.1.1 vs. uniprot
Match: A0A4R3XR17_9PROT (Lipopolysaccharide export system ATP-binding protein n=1 Tax=Sulfurirhabdus autotrophica TaxID=1706046 RepID=A0A4R3XR17_9PROT)

HSP 1 Score: 385 bits (988), Expect = 1.160e-133
Identity = 195/240 (81.25%), Postives = 220/240 (91.67%), Query Frame = 1
Query:    1 MSQLRAEKLKKRYKARTVVKDVSLDVSSGEVVGLLGPNGAGKTTCFYMMVGLVAVDGGDLFLDEQALTHTPIHRRARLGLSYLPQEASIFRKLTVAENIRAVLELRELEDEEIHSQLDTLLHDLHIAHLRNSPAISLSGGERRRVEIARALATQPRFILLDEPFAGVDPIAVLDIQKIIRFLKERAIGVLITDHNVRETLGICDRAYIINDGSVLAAGKPEEIVYNESVRKVYLGEHFRL 720
            MS+L+A  LKKRYK+RTVV+DVSL+VSSGEVVGLLGPNGAGKTTCFYMMVGLV +DGG++ LD + L   PIHRRARLGLSYLPQEASIFRKLTV ENI+A+LEL+ L  ++I +QLD LLH+LHI HLR +PA+SLSGGERRRVEIARALA+QPRFILLDEPFAGVDPIAV+DIQKIIRFL +R IGVLITDHNVRETLGICDRAYIIN+G+VLA GKP+EI+YNESVRKVYLGEHFRL
Sbjct:    1 MSELKASGLKKRYKSRTVVQDVSLEVSSGEVVGLLGPNGAGKTTCFYMMVGLVGLDGGNIQLDGKELGKMPIHRRARLGLSYLPQEASIFRKLTVEENIQAILELQSLTTQQIQNQLDELLHELHIEHLRGNPALSLSGGERRRVEIARALASQPRFILLDEPFAGVDPIAVIDIQKIIRFLTDRGIGVLITDHNVRETLGICDRAYIINEGTVLAFGKPDEIIYNESVRKVYLGEHFRL 240          
BLAST of mRNA_P-wetherbeei_contig17243.1.1 vs. uniprot
Match: A0A7V8BY73_9RHOO (LPS export ABC transporter ATP-binding protein n=4 Tax=Betaproteobacteria TaxID=28216 RepID=A0A7V8BY73_9RHOO)

HSP 1 Score: 383 bits (984), Expect = 4.710e-133
Identity = 198/240 (82.50%), Postives = 214/240 (89.17%), Query Frame = 1
Query:    1 MSQLRAEKLKKRYKARTVVKDVSLDVSSGEVVGLLGPNGAGKTTCFYMMVGLVAVDGGDLFLDEQALTHTPIHRRARLGLSYLPQEASIFRKLTVAENIRAVLELRELEDEEIHSQLDTLLHDLHIAHLRNSPAISLSGGERRRVEIARALATQPRFILLDEPFAGVDPIAVLDIQKIIRFLKERAIGVLITDHNVRETLGICDRAYIINDGSVLAAGKPEEIVYNESVRKVYLGEHFRL 720
            MS L+   LKK+YKARTVVKDVS +V SGEVVGLLGPNGAGKTTCFYM+VGLV  DGG + +D +ALTH PIHRRARLGLSYLPQE S+FRKL VAENIRAVLEL+   +E+I  +LD LL +LHIAHLR++ AISLSGGERRRVEIARALAT PRFILLDEPFAGVDPIAVLDIQKIIRFLKER IGVLITDHNVRETLGICD AYIIN+G VLAAGKPEEIVYNESVRKVYLGEHFRL
Sbjct:    1 MSLLKVSGLKKKYKARTVVKDVSFEVRSGEVVGLLGPNGAGKTTCFYMIVGLVGADGGAIDIDGEALTHMPIHRRARLGLSYLPQEISVFRKLNVAENIRAVLELQPYAEEQIERRLDELLAELHIAHLRDNTAISLSGGERRRVEIARALATSPRFILLDEPFAGVDPIAVLDIQKIIRFLKERGIGVLITDHNVRETLGICDHAYIINEGEVLAAGKPEEIVYNESVRKVYLGEHFRL 240          
BLAST of mRNA_P-wetherbeei_contig17243.1.1 vs. uniprot
Match: A0A2X0QR65_9PROT (Lipopolysaccharide export system ATP-binding protein LptB n=10 Tax=Candidatus Nitrotoga TaxID=453161 RepID=A0A2X0QR65_9PROT)

HSP 1 Score: 382 bits (982), Expect = 9.500e-133
Identity = 193/240 (80.42%), Postives = 216/240 (90.00%), Query Frame = 1
Query:    1 MSQLRAEKLKKRYKARTVVKDVSLDVSSGEVVGLLGPNGAGKTTCFYMMVGLVAVDGGDLFLDEQALTHTPIHRRARLGLSYLPQEASIFRKLTVAENIRAVLELRELEDEEIHSQLDTLLHDLHIAHLRNSPAISLSGGERRRVEIARALATQPRFILLDEPFAGVDPIAVLDIQKIIRFLKERAIGVLITDHNVRETLGICDRAYIINDGSVLAAGKPEEIVYNESVRKVYLGEHFRL 720
            MS+LRA  LKKRY++RTVV DVSL V SGEVVGLLGPNGAGKTTCFYM+VGLVA DGG +F+++Q +TH PIHRRARLGL YLPQEASIFR+LTVA+NI+AVLEL++   E+I S+ D L+ DLHI H+RN+PAISLSGGERRRVEIARALAT PRFILLDEPFAGVDPIAVLDIQKII FLKER IGVLITDHNVRETLGICDRAYIIN GSV+A G P+EI+YNESVRKVYLGEHF+L
Sbjct:    1 MSELRAVSLKKRYRSRTVVHDVSLSVHSGEVVGLLGPNGAGKTTCFYMIVGLVAADGGGIFINDQNITHFPIHRRARLGLGYLPQEASIFRRLTVAQNIQAVLELQDYSKEKIQSRQDELMQDLHITHIRNNPAISLSGGERRRVEIARALATNPRFILLDEPFAGVDPIAVLDIQKIIHFLKERDIGVLITDHNVRETLGICDRAYIINSGSVMAEGTPDEIIYNESVRKVYLGEHFKL 240          
BLAST of mRNA_P-wetherbeei_contig17243.1.1 vs. uniprot
Match: A0A1G0D198_9PROT (LPS export ABC transporter ATP-binding protein n=4 Tax=Nitrosomonadales TaxID=32003 RepID=A0A1G0D198_9PROT)

HSP 1 Score: 382 bits (980), Expect = 1.920e-132
Identity = 191/240 (79.58%), Postives = 217/240 (90.42%), Query Frame = 1
Query:    1 MSQLRAEKLKKRYKARTVVKDVSLDVSSGEVVGLLGPNGAGKTTCFYMMVGLVAVDGGDLFLDEQALTHTPIHRRARLGLSYLPQEASIFRKLTVAENIRAVLELRELEDEEIHSQLDTLLHDLHIAHLRNSPAISLSGGERRRVEIARALATQPRFILLDEPFAGVDPIAVLDIQKIIRFLKERAIGVLITDHNVRETLGICDRAYIINDGSVLAAGKPEEIVYNESVRKVYLGEHFRL 720
            MS+LRA  L KRY++RTVV DVSL + SGEVVGLLGPNGAGKTTCFYM+VGLVA DGGD+F+D+Q +TH PIHRRA+LGL YLPQEASIFR+LTVA+NI AVLEL+   ++EI ++++ LL DLHI H+R++PAISLSGGERRRVEIARALAT PRFILLDEPFAGVDPIAVLDIQKIIRFLKER IGVLITDHNVRETLGICDRAYIIN GSV+A GKP+EI+YNE VRKVYLGEHF+L
Sbjct:    1 MSELRAVTLNKRYRSRTVVHDVSLSLQSGEVVGLLGPNGAGKTTCFYMIVGLVAADGGDIFIDDQNITHMPIHRRAQLGLGYLPQEASIFRRLTVAQNILAVLELQNYPEDEIEARMEELLQDLHITHIRDNPAISLSGGERRRVEIARALATNPRFILLDEPFAGVDPIAVLDIQKIIRFLKERNIGVLITDHNVRETLGICDRAYIINAGSVMAEGKPDEIIYNEGVRKVYLGEHFKL 240          
BLAST of mRNA_P-wetherbeei_contig17243.1.1 vs. uniprot
Match: A0A7X1P7Q1_9PROT (Lipopolysaccharide export system ATP-binding protein LptB n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7X1P7Q1_9PROT)

HSP 1 Score: 381 bits (979), Expect = 2.720e-132
Identity = 192/240 (80.00%), Postives = 218/240 (90.83%), Query Frame = 1
Query:    1 MSQLRAEKLKKRYKARTVVKDVSLDVSSGEVVGLLGPNGAGKTTCFYMMVGLVAVDGGDLFLDEQALTHTPIHRRARLGLSYLPQEASIFRKLTVAENIRAVLELRELEDEEIHSQLDTLLHDLHIAHLRNSPAISLSGGERRRVEIARALATQPRFILLDEPFAGVDPIAVLDIQKIIRFLKERAIGVLITDHNVRETLGICDRAYIINDGSVLAAGKPEEIVYNESVRKVYLGEHFRL 720
            MS+L+A  LKKRYK+R VVKDVSLDV+SGEV+GLLGPNGAGKTTCFYMMVGLV VDGG+L+LD++ +TH PIH RARLGLSYLPQEASIFR+LTV+ENI+A+LEL+ L ++EI +QL+ LL DL++  LR++PAI LSGGERRRVEIAR LA  PRFILLDEPFAGVDPIAVLDIQKII FLK R IGV+ITDHNVRETLGICDRAYIIN+GSVLA GKP+EIVYNESVRKVYLGEHFRL
Sbjct:    1 MSELKAISLKKRYKSRVVVKDVSLDVTSGEVIGLLGPNGAGKTTCFYMMVGLVPVDGGELYLDDKRMTHMPIHSRARLGLSYLPQEASIFRRLTVSENIQAILELQTLTEDEIRAQLEDLLSDLNVTQLRDNPAIGLSGGERRRVEIARTLAANPRFILLDEPFAGVDPIAVLDIQKIIGFLKARGIGVVITDHNVRETLGICDRAYIINEGSVLACGKPDEIVYNESVRKVYLGEHFRL 240          
BLAST of mRNA_P-wetherbeei_contig17243.1.1 vs. uniprot
Match: A0A2W4JS45_9PROT (Lipopolysaccharide export system ATP-binding protein LptB n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4JS45_9PROT)

HSP 1 Score: 381 bits (978), Expect = 3.470e-132
Identity = 191/237 (80.59%), Postives = 218/237 (91.98%), Query Frame = 1
Query:   10 LRAEKLKKRYKARTVVKDVSLDVSSGEVVGLLGPNGAGKTTCFYMMVGLVAVDGGDLFLDEQALTHTPIHRRARLGLSYLPQEASIFRKLTVAENIRAVLELRELEDEEIHSQLDTLLHDLHIAHLRNSPAISLSGGERRRVEIARALATQPRFILLDEPFAGVDPIAVLDIQKIIRFLKERAIGVLITDHNVRETLGICDRAYIINDGSVLAAGKPEEIVYNESVRKVYLGEHFRL 720
            +RA  L KRYK RTVV DVSL+V+SGEVVGLLGPNGAGKTTCFYM+VGLVA +GG +++D+Q +T  PIHRRARLGLSYLPQEAS+FR+LTV EN+RAVLEL++LE EEI  +L+ LL +LHIAHLR++ A+SLSGGERRRVEIARALATQP FILLDEPFAGVDPIAVLDIQ+IIRFLKER IGVLITDHNVRETLGICDRAYIIN+G+VLA+G+PEEIVYNESVR+VYLGEHFRL
Sbjct:    1 MRAVNLNKRYKKRTVVHDVSLEVASGEVVGLLGPNGAGKTTCFYMIVGLVAANGGSIYIDDQDITRLPIHRRARLGLSYLPQEASVFRRLTVQENVRAVLELQDLEPEEIEQRLNALLDELHIAHLRDATALSLSGGERRRVEIARALATQPSFILLDEPFAGVDPIAVLDIQRIIRFLKERGIGVLITDHNVRETLGICDRAYIINEGTVLASGRPEEIVYNESVRRVYLGEHFRL 237          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17243.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F4DTI5_9PROT1.550e-13882.92Lipopolysaccharide export system ATP-binding prote... [more]
A0A7V8ZNR6_9BURK2.100e-13683.33Lipopolysaccharide export system ATP-binding prote... [more]
A0A3N5WJY6_9PROT9.260e-13581.01LPS export ABC transporter ATP-binding protein n=1... [more]
A0A1W6SLL6_9PROT5.750e-13481.25Lipopolysaccharide export system ATP-binding prote... [more]
A0A4R3XR17_9PROT1.160e-13381.25Lipopolysaccharide export system ATP-binding prote... [more]
A0A7V8BY73_9RHOO4.710e-13382.50LPS export ABC transporter ATP-binding protein n=4... [more]
A0A2X0QR65_9PROT9.500e-13380.42Lipopolysaccharide export system ATP-binding prote... [more]
A0A1G0D198_9PROT1.920e-13279.58LPS export ABC transporter ATP-binding protein n=4... [more]
A0A7X1P7Q1_9PROT2.720e-13280.00Lipopolysaccharide export system ATP-binding prote... [more]
A0A2W4JS45_9PROT3.470e-13280.59Lipopolysaccharide export system ATP-binding prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17243contigP-wetherbeei_contig17243:41..763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1288494.EBAPG3_7420
Preferred namelptB
PFAMsABC_tran,BCA_ABC_TP_C
Model size723
Max annot lvl28216|Betaproteobacteria
KEGG koko:K06861
KEGG TC1.B.42.1
KEGG Pathwayko02010,map02010
KEGG ModuleM00320
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.42e-135
EggNOG OGsCOG1137@1|root,COG1137@2|Bacteria,1MU8M@1224|Proteobacteria,2VH29@28216|Betaproteobacteria,372DG@32003|Nitrosomonadales
DescriptionBranched-chain amino acid ATP-binding cassette transporter
Cds size723
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186111.7458045-CDS-P-wetherbeei_contig17243:40..7631683186111.7458045-CDS-P-wetherbeei_contig17243:40..763Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17243 41..763 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17243.1.1prot_P-wetherbeei_contig17243.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17243 41..763 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17243.1.1

>prot_P-wetherbeei_contig17243.1.1 ID=prot_P-wetherbeei_contig17243.1.1|Name=mRNA_P-wetherbeei_contig17243.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=241bp
MSQLRAEKLKKRYKARTVVKDVSLDVSSGEVVGLLGPNGAGKTTCFYMMV
GLVAVDGGDLFLDEQALTHTPIHRRARLGLSYLPQEASIFRKLTVAENIR
AVLELRELEDEEIHSQLDTLLHDLHIAHLRNSPAISLSGGERRRVEIARA
LATQPRFILLDEPFAGVDPIAVLDIQKIIRFLKERAIGVLITDHNVRETL
GICDRAYIINDGSVLAAGKPEEIVYNESVRKVYLGEHFRL*
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mRNA from alignment at P-wetherbeei_contig17243:41..763-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17243.1.1 ID=mRNA_P-wetherbeei_contig17243.1.1|Name=mRNA_P-wetherbeei_contig17243.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=723bp|location=Sequence derived from alignment at P-wetherbeei_contig17243:41..763- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCCAACTGCGCGCGGAAAAACTCAAGAAGCGCTATAAGGCGCGCAC TGTCGTCAAGGATGTTTCGCTGGATGTTTCCAGCGGCGAAGTTGTTGGTC TGCTCGGGCCAAATGGCGCAGGCAAAACCACCTGCTTCTACATGATGGTG GGCTTGGTCGCGGTCGATGGCGGCGACCTTTTCCTGGATGAGCAGGCCCT GACCCATACGCCGATTCACCGGCGCGCCCGGCTTGGGCTGTCCTACCTGC CGCAGGAAGCGTCCATTTTCCGCAAGTTGACCGTTGCGGAAAACATTCGC GCCGTCCTCGAATTGCGCGAACTCGAGGATGAGGAAATCCATTCCCAGCT CGACACCCTGCTGCACGACCTGCATATCGCCCATTTGCGCAACAGCCCGG CCATCAGCCTTTCCGGCGGCGAGCGACGACGTGTCGAAATCGCTCGGGCG CTGGCCACCCAGCCTCGCTTCATCCTGCTCGACGAGCCTTTTGCCGGGGT GGACCCGATCGCCGTGCTGGATATCCAGAAAATCATCCGCTTTCTGAAGG AGCGCGCCATCGGGGTTTTGATCACGGACCACAATGTCCGGGAAACTTTG GGCATTTGTGATCGCGCCTACATCATCAACGACGGCTCCGTGCTGGCCGC CGGCAAGCCCGAGGAAATCGTTTATAATGAAAGCGTAAGGAAAGTGTATC TGGGCGAACACTTCAGGCTGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17243:41..763-

>mRNA_P-wetherbeei_contig17243.1.1 ID=mRNA_P-wetherbeei_contig17243.1.1|Name=mRNA_P-wetherbeei_contig17243.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=723bp|location=Sequence derived from alignment at P-wetherbeei_contig17243:41..763- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCCAACTGCGCGCGGAAAAACTCAAGAAGCGCTATAAGGCGCGCAC
TGTCGTCAAGGATGTTTCGCTGGATGTTTCCAGCGGCGAAGTTGTTGGTC
TGCTCGGGCCAAATGGCGCAGGCAAAACCACCTGCTTCTACATGATGGTG
GGCTTGGTCGCGGTCGATGGCGGCGACCTTTTCCTGGATGAGCAGGCCCT
GACCCATACGCCGATTCACCGGCGCGCCCGGCTTGGGCTGTCCTACCTGC
CGCAGGAAGCGTCCATTTTCCGCAAGTTGACCGTTGCGGAAAACATTCGC
GCCGTCCTCGAATTGCGCGAACTCGAGGATGAGGAAATCCATTCCCAGCT
CGACACCCTGCTGCACGACCTGCATATCGCCCATTTGCGCAACAGCCCGG
CCATCAGCCTTTCCGGCGGCGAGCGACGACGTGTCGAAATCGCTCGGGCG
CTGGCCACCCAGCCTCGCTTCATCCTGCTCGACGAGCCTTTTGCCGGGGT
GGACCCGATCGCCGTGCTGGATATCCAGAAAATCATCCGCTTTCTGAAGG
AGCGCGCCATCGGGGTTTTGATCACGGACCACAATGTCCGGGAAACTTTG
GGCATTTGTGATCGCGCCTACATCATCAACGACGGCTCCGTGCTGGCCGC
CGGCAAGCCCGAGGAAATCGTTTATAATGAAAGCGTAAGGAAAGTGTATC
TGGGCGAACACTTCAGGCTGTAG
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