mRNA_P-wetherbeei_contig17239.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17239.1.1
Unique NamemRNA_P-wetherbeei_contig17239.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17239.1.1 vs. uniprot
Match: A0A1E4EZA4_9BACT (Uncharacterized protein n=1 Tax=bacterium SCN 62-11 TaxID=1660156 RepID=A0A1E4EZA4_9BACT)

HSP 1 Score: 134 bits (338), Expect = 2.310e-31
Identity = 109/322 (33.85%), Postives = 166/322 (51.55%), Query Frame = 1 
Query:   40 SGYILLEGPAGAGKSLVVSSLGLAHEGAPGAPYPIVVLPVREALQSDNQTFIEILDERLKDSVHSQLR---PLGHRVTRELNERYPAHLCSKRFFAYLSGLLLLSGSRILLVLDGLDEVFEGSESQIFLSDFLPEALPDGAFIVITSQRDACASRTINKLEALEAAGAVRYTLDPADKS-YQIYPPRFLGADPPPGSEGQVLSLIEHRHVLGESELLSASLVRSSA---------ELFPLAFEALERKLGNEPLELLLALASIPGRLRVADMNLLGLPASTLQALLENWHSLL--RLTLSEYGLTVALAHQALRQYLLENYA 960
            S Y+L++ PAG GKSL ++ L    + A      ++   VR     D QT IE +DE ++  + +Q+    PLG  V +ELN RY     +++F AYLS L+L +G R +L LDGLDE FEGS+S + L+DFLP+ LPDG F+++  + D C++R   +L  L   GA+     P DK  Y  +  R + A     S      L+E  + L ES LL   +              E+       LER+ G+  L LL+ LA+    + + +++ LG   S +Q LL +  +L       +  G  + LAH+ LR +L E+Y+
Sbjct:  139 SAYLLVDAPAGTGKSLSLAGL----QQALSPDLTVLHFSVRTCFGGDFQTLIEEVDEGIQTRLDAQITTMVPLGPLVIQELNRRYSPLSPAEKFQAYLSQLVLRNGQRFVLALDGLDEAFEGSDSSLSLADFLPDQLPDGVFLLLAYRGDGCSARLQRRLTQLLERGAIALEF-PLDKPVYVSWCQRIIAASFV--SPENAARLVEQGYPLMESRLLGQGVEADHLPPGNWPGHDEVLLDLIANLERRWGDPWLRLLMVLATAYNPVPIEELSDLGFSPSMVQELLYDVPALFLAERPTANSGWQLQLAHENLRLHLQEHYS 453
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17239.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1E4EZA4_9BACT2.310e-3133.85Uncharacterized protein n=1 Tax=bacterium SCN 62-1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17239contigP-wetherbeei_contig17239:1..960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1173028.ANKO01000094_gene2596
Model size960
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000282
EggNOG OGsCOG0470@1|root,COG0470@2|Bacteria,1GQZB@1117|Cyanobacteria,1HI5M@1150|Oscillatoriales
DescriptionDNA polymerase III
Cds size960
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186111.6557872-CDS-P-wetherbeei_contig17239:0..9601683186111.6557872-CDS-P-wetherbeei_contig17239:0..960Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17239 1..960 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17239.1.1prot_P-wetherbeei_contig17239.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17239 1..960 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17239.1.1

>prot_P-wetherbeei_contig17239.1.1 ID=prot_P-wetherbeei_contig17239.1.1|Name=mRNA_P-wetherbeei_contig17239.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=320bp
IVLRLHTFCQERRSGYILLEGPAGAGKSLVVSSLGLAHEGAPGAPYPIVV
LPVREALQSDNQTFIEILDERLKDSVHSQLRPLGHRVTRELNERYPAHLC
SKRFFAYLSGLLLLSGSRILLVLDGLDEVFEGSESQIFLSDFLPEALPDG
AFIVITSQRDACASRTINKLEALEAAGAVRYTLDPADKSYQIYPPRFLGA
DPPPGSEGQVLSLIEHRHVLGESELLSASLVRSSAELFPLAFEALERKLG
NEPLELLLALASIPGRLRVADMNLLGLPASTLQALLENWHSLLRLTLSEY
GLTVALAHQALRQYLLENYA
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mRNA from alignment at P-wetherbeei_contig17239:1..960-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17239.1.1 ID=mRNA_P-wetherbeei_contig17239.1.1|Name=mRNA_P-wetherbeei_contig17239.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=960bp|location=Sequence derived from alignment at P-wetherbeei_contig17239:1..960- (Phaeothamnion wetherbeei SAG_119_79)
ATCGTGCTCCGATTGCACACTTTTTGCCAGGAGAGACGGAGCGGCTATAT
TCTCCTGGAAGGGCCGGCTGGGGCCGGTAAATCCCTGGTCGTAAGCAGCC
TGGGGCTAGCTCACGAGGGAGCCCCAGGAGCCCCCTACCCGATCGTTGTA
CTTCCGGTTCGCGAAGCGCTCCAGTCCGACAACCAGACTTTCATCGAGAT
TCTCGACGAACGGCTCAAAGATTCCGTGCACTCGCAGCTTCGTCCGCTCG
GTCATCGAGTTACGCGGGAGCTCAACGAGCGCTATCCAGCTCACCTCTGC
AGTAAACGCTTCTTTGCCTACCTCAGCGGCTTGCTACTCCTCAGTGGCAG
TCGGATTCTTCTCGTCCTCGACGGTCTCGACGAGGTATTCGAGGGCAGCG
AGAGCCAAATTTTCCTCTCCGATTTTCTGCCCGAGGCGCTTCCCGACGGC
GCCTTCATCGTCATCACCAGCCAGCGCGACGCCTGTGCTTCCCGCACCAT
CAACAAACTCGAGGCTTTAGAGGCCGCCGGAGCGGTTCGCTACACCCTCG
ACCCCGCCGACAAGAGCTACCAAATATACCCTCCACGCTTTCTAGGGGCC
GATCCACCTCCTGGAAGCGAGGGCCAGGTCCTCTCCCTGATCGAACACCG
TCACGTGCTGGGCGAGTCAGAACTGCTGAGCGCCTCTCTGGTCCGTTCGA
GTGCCGAACTATTTCCTTTGGCGTTCGAAGCCCTGGAACGCAAATTGGGC
AACGAACCTCTCGAACTTCTCCTGGCCCTGGCCTCCATTCCGGGGCGGCT
CCGCGTAGCCGACATGAACTTGCTGGGACTACCCGCCTCGACTCTCCAAG
CGCTCCTGGAGAATTGGCACAGCCTGCTGCGTCTGACCTTGAGCGAGTAC
GGTTTGACGGTAGCACTGGCCCACCAGGCGCTACGCCAATATCTATTGGA
AAATTACGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17239:1..960-

>mRNA_P-wetherbeei_contig17239.1.1 ID=mRNA_P-wetherbeei_contig17239.1.1|Name=mRNA_P-wetherbeei_contig17239.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=960bp|location=Sequence derived from alignment at P-wetherbeei_contig17239:1..960- (Phaeothamnion wetherbeei SAG_119_79)
ATCGTGCTCCGATTGCACACTTTTTGCCAGGAGAGACGGAGCGGCTATAT
TCTCCTGGAAGGGCCGGCTGGGGCCGGTAAATCCCTGGTCGTAAGCAGCC
TGGGGCTAGCTCACGAGGGAGCCCCAGGAGCCCCCTACCCGATCGTTGTA
CTTCCGGTTCGCGAAGCGCTCCAGTCCGACAACCAGACTTTCATCGAGAT
TCTCGACGAACGGCTCAAAGATTCCGTGCACTCGCAGCTTCGTCCGCTCG
GTCATCGAGTTACGCGGGAGCTCAACGAGCGCTATCCAGCTCACCTCTGC
AGTAAACGCTTCTTTGCCTACCTCAGCGGCTTGCTACTCCTCAGTGGCAG
TCGGATTCTTCTCGTCCTCGACGGTCTCGACGAGGTATTCGAGGGCAGCG
AGAGCCAAATTTTCCTCTCCGATTTTCTGCCCGAGGCGCTTCCCGACGGC
GCCTTCATCGTCATCACCAGCCAGCGCGACGCCTGTGCTTCCCGCACCAT
CAACAAACTCGAGGCTTTAGAGGCCGCCGGAGCGGTTCGCTACACCCTCG
ACCCCGCCGACAAGAGCTACCAAATATACCCTCCACGCTTTCTAGGGGCC
GATCCACCTCCTGGAAGCGAGGGCCAGGTCCTCTCCCTGATCGAACACCG
TCACGTGCTGGGCGAGTCAGAACTGCTGAGCGCCTCTCTGGTCCGTTCGA
GTGCCGAACTATTTCCTTTGGCGTTCGAAGCCCTGGAACGCAAATTGGGC
AACGAACCTCTCGAACTTCTCCTGGCCCTGGCCTCCATTCCGGGGCGGCT
CCGCGTAGCCGACATGAACTTGCTGGGACTACCCGCCTCGACTCTCCAAG
CGCTCCTGGAGAATTGGCACAGCCTGCTGCGTCTGACCTTGAGCGAGTAC
GGTTTGACGGTAGCACTGGCCCACCAGGCGCTACGCCAATATCTATTGGA
AAATTACGCG
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