mRNA_P-wetherbeei_contig17231.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17231.1.1
Unique NamemRNA_P-wetherbeei_contig17231.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17231.1.1 vs. uniprot
Match: D7G6B4_ECTSI (Rab11B, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6B4_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 7.100e-62
Identity = 98/125 (78.40%), Postives = 108/125 (86.40%), Query Frame = 1
Query:    4 SSLDYDVLYKIVLVGDAAVGKTNLLGYYTSADKHPRADGTAPSFSDTRKATVGVEFATMIVKHADGTRIKAQIWDTAGQERYRAITSSHYKRAAGALLVFDVTNRRSFENAKNVWLRELRNSAES 378
            SSL+YD L+KIVLVGDAAVGKTNLL  YTS DK  R DGT PSF   RK TVGVEFATM+V H DG RIKAQIWDTAGQERYRAITSSHYKRA+GALLV+DVT+R SFENA+ VWLREL+N+A+S
Sbjct:    5 SSLEYDYLFKIVLVGDAAVGKTNLLACYTSQDKRQRPDGTVPSFRSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSSHYKRASGALLVYDVTSRSSFENAEKVWLRELKNAADS 129          
BLAST of mRNA_P-wetherbeei_contig17231.1.1 vs. uniprot
Match: A0A6S9ECQ7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9ECQ7_HETAK)

HSP 1 Score: 172 bits (437), Expect = 4.290e-52
Identity = 86/124 (69.35%), Postives = 100/124 (80.65%), Query Frame = 1
Query:    7 SLDYDVLYKIVLVGDAAVGKTNLLGYYTSADKHPRADGTAPSFSDTRKATVGVEFATMIVKHADGTRIKAQIWDTAGQERYRAITSSHYKRAAGALLVFDVTNRRSFENAKNVWLRELRNSAES 378
            S  YDV+YKIVLVGD  VGKTNLL  +TS  K    +G   SF++ RK TVGVEFA+ IVKH +G RIKAQIWDTAGQERY AIT SHY+RAAGALLV+DVTNR+SF+NAKN WL+EL+ SA+S
Sbjct:   10 SEQYDVMYKIVLVGDPGVGKTNLLSCFTSYRKDTSENGAVVSFNENRKPTVGVEFASWIVKHPNGDRIKAQIWDTAGQERYNAITKSHYRRAAGALLVYDVTNRKSFDNAKNWWLKELKESADS 133          
BLAST of mRNA_P-wetherbeei_contig17231.1.1 vs. uniprot
Match: A0A024U937_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U937_9STRA)

HSP 1 Score: 162 bits (411), Expect = 1.570e-48
Identity = 79/124 (63.71%), Postives = 100/124 (80.65%), Query Frame = 1
Query:   16 YDVLYKIVLVGDAAVGKTNLLGYYTSADKHPRADGTAPS---FSDTRKATVGVEFATMIVKHADGTRIKAQIWDTAGQERYRAITSSHYKRAAGALLVFDVTNRRSFENAKNVWLRELRNSAES 378
            YD LYK+VLVGD  VGKTNLL Y+T++D+    D +  +   FS+ RK T+GVEF T I+ H +G RIKAQIWDTAGQERYRAITSSHY+RAAGAL+V+DV++R SF+NA+  WL+ELRNSA++
Sbjct:    8 YDELYKVVLVGDPGVGKTNLLAYFTASDEDMAIDASTNASKIFSNVRKPTIGVEFGTKIITHPNGKRIKAQIWDTAGQERYRAITSSHYRRAAGALIVYDVSSRTSFDNAQGHWLKELRNSADT 131          
BLAST of mRNA_P-wetherbeei_contig17231.1.1 vs. uniprot
Match: A0A024UAY6_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024UAY6_9STRA)

HSP 1 Score: 162 bits (411), Expect = 4.190e-48
Identity = 79/124 (63.71%), Postives = 100/124 (80.65%), Query Frame = 1
Query:   16 YDVLYKIVLVGDAAVGKTNLLGYYTSADKHPRADGTAPS---FSDTRKATVGVEFATMIVKHADGTRIKAQIWDTAGQERYRAITSSHYKRAAGALLVFDVTNRRSFENAKNVWLRELRNSAES 378
            YD LYK+VLVGD  VGKTNLL Y+T++D+    D +  +   FS+ RK T+GVEF T I+ H +G RIKAQIWDTAGQERYRAITSSHY+RAAGAL+V+DV++R SF+NA+  WL+ELRNSA++
Sbjct:    8 YDELYKVVLVGDPGVGKTNLLAYFTASDEDMAIDASTNASKIFSNVRKPTIGVEFGTKIITHPNGKRIKAQIWDTAGQERYRAITSSHYRRAAGALIVYDVSSRTSFDNAQGHWLKELRNSADT 131          
BLAST of mRNA_P-wetherbeei_contig17231.1.1 vs. uniprot
Match: A0A485LBE8_9STRA (Aste57867_18857 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBE8_9STRA)

HSP 1 Score: 162 bits (409), Expect = 2.090e-47
Identity = 79/124 (63.71%), Postives = 100/124 (80.65%), Query Frame = 1
Query:   16 YDVLYKIVLVGDAAVGKTNLLGYYTSADKHPRADGTAPS---FSDTRKATVGVEFATMIVKHADGTRIKAQIWDTAGQERYRAITSSHYKRAAGALLVFDVTNRRSFENAKNVWLRELRNSAES 378
            YD LYK+VLVGD  VGKTNLL Y+T++D     D +  +   FS+ RK T+GVEF T I+ H +G RIKAQIWDTAGQERYRAITSSHY+RAAGAL+V+DV++R SF+NA++ WL+ELRNSA++
Sbjct:   36 YDELYKVVLVGDPGVGKTNLLAYFTASDDEMAIDTSTNASKIFSNVRKPTIGVEFGTKIITHPNGKRIKAQIWDTAGQERYRAITSSHYRRAAGALIVYDVSSRTSFDNAQSHWLKELRNSADT 159          
BLAST of mRNA_P-wetherbeei_contig17231.1.1 vs. uniprot
Match: A0A1W0A2A3_9STRA (Rab11/RabA-family small GTPase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2A3_9STRA)

HSP 1 Score: 159 bits (402), Expect = 9.910e-47
Identity = 79/124 (63.71%), Postives = 97/124 (78.23%), Query Frame = 1
Query:   16 YDVLYKIVLVGDAAVGKTNLLGYYTSADKHPRADGTAPS---FSDTRKATVGVEFATMIVKHADGTRIKAQIWDTAGQERYRAITSSHYKRAAGALLVFDVTNRRSFENAKNVWLRELRNSAES 378
            YD LYK+VLVGD  VGKTNLL Y+T+ ++    D    +   FS  RK T+GVEF T I+ H +G RIKAQIWDTAGQERYRAITSSHY+RAAGAL+V+DVT++ +FENA+  WL+ELRNSA+S
Sbjct:    4 YDELYKVVLVGDPGVGKTNLLAYFTATEEEMAMDAETNASKIFSAVRKPTIGVEFGTKIITHPNGKRIKAQIWDTAGQERYRAITSSHYRRAAGALVVYDVTSKATFENAQCHWLKELRNSADS 127          
BLAST of mRNA_P-wetherbeei_contig17231.1.1 vs. uniprot
Match: A0A6G0WZ29_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WZ29_9STRA)

HSP 1 Score: 158 bits (400), Expect = 2.110e-46
Identity = 77/124 (62.10%), Postives = 98/124 (79.03%), Query Frame = 1
Query:   16 YDVLYKIVLVGDAAVGKTNLLGYYTSADKHPRADGTAPS---FSDTRKATVGVEFATMIVKHADGTRIKAQIWDTAGQERYRAITSSHYKRAAGALLVFDVTNRRSFENAKNVWLRELRNSAES 378
            YD LYK+VLVGD  VGKTNLL Y+T+ +     D +  +   FS  RK T+GVEF T I+ H +G RIKAQIWDTAGQERYRAITSSHY+RAAGAL+V+DV++R +F+NA++ WL+ELRNSA++
Sbjct:    9 YDELYKVVLVGDPGVGKTNLLAYFTATEDEMAIDSSTNASKIFSAVRKPTIGVEFGTKIITHPNGKRIKAQIWDTAGQERYRAITSSHYRRAAGALIVYDVSSRSTFDNAQSHWLKELRNSADT 132          
BLAST of mRNA_P-wetherbeei_contig17231.1.1 vs. uniprot
Match: A0A067CD03_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CD03_SAPPC)

HSP 1 Score: 156 bits (394), Expect = 1.560e-45
Identity = 76/125 (60.80%), Postives = 97/125 (77.60%), Query Frame = 1
Query:   16 YDVLYKIVLVGDAAVGKTNLLGYYTSADKHPRADGTAPSF----SDTRKATVGVEFATMIVKHADGTRIKAQIWDTAGQERYRAITSSHYKRAAGALLVFDVTNRRSFENAKNVWLRELRNSAES 378
            YD LYK+VLVGD  VGKTNLL Y+T+ ++    D +  +     S  RK T+GVEF T I+ H +G RIKAQIWDTAGQERYRAITSSHY+RAAGAL+V+DV++R +F+NA+  WL+ELRNSA++
Sbjct:    4 YDELYKVVLVGDPGVGKTNLLAYFTATEEEMAVDASTNASKIFSSSVRKPTIGVEFGTKIITHPNGKRIKAQIWDTAGQERYRAITSSHYRRAAGALVVYDVSSRATFDNAQTHWLKELRNSADN 128          
BLAST of mRNA_P-wetherbeei_contig17231.1.1 vs. uniprot
Match: A0A3R7GTT6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GTT6_9STRA)

HSP 1 Score: 155 bits (392), Expect = 1.760e-45
Identity = 79/124 (63.71%), Postives = 95/124 (76.61%), Query Frame = 1
Query:    1 MSSLDYDVLYKIVLVGDAAVGKTNLLGYYTSADKHPRADGTAPSFSDTRKATVGVEFATMIVKHADGTRIKAQIWDTAGQERYRAITSSHYKRAAGALLVFDVTNRRSFENAKNVWLRELRNSA 372
            M+   YD LYK+VLVGD  VGKTNLL  + ++D     +G + +FS  RK T+GVEF T IV H +G RIKAQIWDTAGQERYRAITSSHY+RAAGAL+VFDVTNR SF+NA+  W +EL+ SA
Sbjct:    1 MNEHHYDELYKVVLVGDPGVGKTNLLATFLASDAVTE-EGISRTFSAVRKPTIGVEFGTAIVHHPNGKRIKAQIWDTAGQERYRAITSSHYRRAAGALVVFDVTNRASFDNAQEHWFKELKASA 123          
BLAST of mRNA_P-wetherbeei_contig17231.1.1 vs. uniprot
Match: A0A0P1AJW8_PLAHL (Rab other n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJW8_PLAHL)

HSP 1 Score: 155 bits (393), Expect = 1.970e-45
Identity = 78/119 (65.55%), Postives = 93/119 (78.15%), Query Frame = 1
Query:   16 YDVLYKIVLVGDAAVGKTNLLGYYTSADKHPRADGTAPSFSDTRKATVGVEFATMIVKHADGTRIKAQIWDTAGQERYRAITSSHYKRAAGALLVFDVTNRRSFENAKNVWLRELRNSA 372
            YD LYK+VLVGD  VGKTNLL  + +A+      G + SFS  R AT+GVEFAT I++H +G RIKAQIWDTAGQERYRAITSSHY+RAAGAL+VFDVT R SF NA+  WL+EL+ +A
Sbjct:    5 YDELYKVVLVGDPGVGKTNLLATFLAAET-VNEQGISRSFSADRNATIGVEFATTIIRHPNGKRIKAQIWDTAGQERYRAITSSHYRRAAGALIVFDVTKRESFNNAQEYWLKELKAAA 122          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17231.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6B4_ECTSI7.100e-6278.40Rab11B, RAB family GTPase n=1 Tax=Ectocarpus silic... [more]
A0A6S9ECQ7_HETAK4.290e-5269.35Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A024U937_9STRA1.570e-4863.71Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A024UAY6_9STRA4.190e-4863.71Uncharacterized protein n=5 Tax=Aphanomyces TaxID=... [more]
A0A485LBE8_9STRA2.090e-4763.71Aste57867_18857 protein n=1 Tax=Aphanomyces stella... [more]
A0A1W0A2A3_9STRA9.910e-4763.71Rab11/RabA-family small GTPase n=1 Tax=Thraustothe... [more]
A0A6G0WZ29_9STRA2.110e-4662.10Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A067CD03_SAPPC1.560e-4560.80Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A3R7GTT6_9STRA1.760e-4563.71Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A0P1AJW8_PLAHL1.970e-4565.55Rab other n=1 Tax=Plasmopara halstedii TaxID=4781 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17231contigP-wetherbeei_contig17231:6..925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G6B4
PFAMsGCK,Ras
Model size378
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.16e-62
EggNOG OGsCOG1100@1|root,KOG0087@2759|Eukaryota
DescriptionGTPase activity
Cds size378
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186111.5000825-CDS-P-wetherbeei_contig17231:5..1511683186111.5000825-CDS-P-wetherbeei_contig17231:5..151Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17231 6..151 -
1683186111.5086896-CDS-P-wetherbeei_contig17231:560..6961683186111.5086896-CDS-P-wetherbeei_contig17231:560..696Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17231 561..696 -
1683186111.5159488-CDS-P-wetherbeei_contig17231:829..9251683186111.5159488-CDS-P-wetherbeei_contig17231:829..925Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17231 830..925 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17231.1.1prot_P-wetherbeei_contig17231.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17231 6..925 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17231.1.1

>prot_P-wetherbeei_contig17231.1.1 ID=prot_P-wetherbeei_contig17231.1.1|Name=mRNA_P-wetherbeei_contig17231.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
MSSLDYDVLYKIVLVGDAAVGKTNLLGYYTSADKHPRADGTAPSFSDTRK
ATVGVEFATMIVKHADGTRIKAQIWDTAGQERYRAITSSHYKRAAGALLV
FDVTNRRSFENAKNVWLRELRNSAES
back to top

mRNA from alignment at P-wetherbeei_contig17231:6..925-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17231.1.1 ID=mRNA_P-wetherbeei_contig17231.1.1|Name=mRNA_P-wetherbeei_contig17231.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=920bp|location=Sequence derived from alignment at P-wetherbeei_contig17231:6..925- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCAGCCTCGACTATGACGTGTTGTACAAGATCGTCTTGGTGGGGGA CGCCGCTGTCGGCAAGACAAACCTTTTGGGGTACTATACCTCGGCGGTGA GTCGACTTCGCCCTTGCGCTTACCCCTTGCACCAGCAAGTGAATAAGCAG ACGTTGCAAGATCGCTAGCAAGCGCAAGAAGTCCTCATTTCCGTTCTCAT TGATCGAAAATTTTCCCTTACAACTGTAGGACAAACACCCTCGTGCGGAC GGCACGGCGCCGAGCTTTAGCGACACCCGAAAGGCCACCGTCGGCGTCGA ATTCGCCACGATGATCGTTAAGCACGCCGACGGAACGCGCATCAAGGCGC AGATCTGGGATACAGGTACATCGCAGTTAGGGCCGGCAGATTCGTTAGGC TGTCTTCTTCTCATGCAAGTTAACGTGTCGGTCCCACCTTTTTGAAGTGT GGCTTTGCTGTGTGTCGGTTTGGCCAACTGTTGTCAATGGAGCTTCCATT AAGCAGGAGTTGGTGTTCTTCGCTTTCCTTGCTCTGCACTTCTTTGCGAC GAATATTGCTTGCTCTCTTGCCTTTACAACCCTACGGCTCTCTGGTTTTC GGCTTCCTGTCTTTGTTGGTAGCGGAATTCTCCGCTCGAGCCGGCACACC TCCTCTCCGTCATGCCTCAAACCTCAAACGTGCCCACTCCAGGCTTTTCC TCACCCGAAACTCAACCTCTCGTCCCCATCCCCATAACGGAACGAAACCA AACGACGTCATCAACGAAAAACAGCCGGACAGGAGCGGTACCGCGCCATC ACGTCCTCGCACTACAAGCGGGCGGCGGGCGCACTGCTTGTGTTCGACGT CACTAACCGGCGGTCTTTCGAGAACGCCAAGAACGTGTGGCTGCGCGAGC TGCGCAACTCGGCCGAGTCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig17231:6..925-

>mRNA_P-wetherbeei_contig17231.1.1 ID=mRNA_P-wetherbeei_contig17231.1.1|Name=mRNA_P-wetherbeei_contig17231.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig17231:6..925- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCAGCCTCGACTATGACGTGTTGTACAAGATCGTCTTGGTGGGGGA
CGCCGCTGTCGGCAAGACAAACCTTTTGGGGTACTATACCTCGGCGGACA
AACACCCTCGTGCGGACGGCACGGCGCCGAGCTTTAGCGACACCCGAAAG
GCCACCGTCGGCGTCGAATTCGCCACGATGATCGTTAAGCACGCCGACGG
AACGCGCATCAAGGCGCAGATCTGGGATACAGCCGGACAGGAGCGGTACC
GCGCCATCACGTCCTCGCACTACAAGCGGGCGGCGGGCGCACTGCTTGTG
TTCGACGTCACTAACCGGCGGTCTTTCGAGAACGCCAAGAACGTGTGGCT
GCGCGAGCTGCGCAACTCGGCCGAGTCG
back to top