mRNA_P-wetherbeei_contig1722.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1722.6.1
Unique NamemRNA_P-wetherbeei_contig1722.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1722.6.1 vs. uniprot
Match: A0A7S2FYU3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FYU3_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.090e-12
Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = 1 
Query:  124 SLLRSVGRSSASFATVIGVLNGVSCSMEKLRGERDWRNQAVGGFAAGALIAMSSRNPTVIMSSALGTALLAGAL 345
            +++ S+GRSS  F   +G+ NGVSC++E +R  +DW N   GG AAG    +++R+P +IM SALGT ++  A+
Sbjct:   45 AVVSSMGRSSLGFGLFLGIFNGVSCNVETIRKRKDWVNSFAGGAAAGTFAGLNTRDPRMIMYSALGTGVVTSAV 118
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BLAST of mRNA_P-wetherbeei_contig1722.6.1 vs. uniprot
Match: A0A484LJY1_9ASTE (Uncharacterized protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484LJY1_9ASTE)

HSP 1 Score: 53.5 bits (127), Expect = 2.240e-6
Identity = 29/68 (42.65%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:  145 RSSASFATVIGVLNGVSCSMEKLRGERDWRNQAVGGFAAGALIAMSSRN--PTVIMSSALGTALLAGA 342
            R  A + TV GV  G+   +E++RGERDW+N  VGG  AGALI+ +S N    ++M +  G A+   A
Sbjct:   73 REGAYWGTVAGVYAGMEFGVERIRGERDWKNAMVGGALAGALISAASSNNREKIVMDAITGGAIATAA 140
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BLAST of mRNA_P-wetherbeei_contig1722.6.1 vs. uniprot
Match: A0A7S2LNR3_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LNR3_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 6.470e-5
Identity = 30/67 (44.78%), Postives = 38/67 (56.72%), Query Frame = 1 
Query:  145 RSSASFATVIGVLNGVSCSMEKLRGERDWRNQAVGGFAAGALIAMSSRNPTVIMSSALGTALLAGAL 345
            R +  F  V G    V C  E+ RGERD  N A+GG AAG L+A  +R    +  +ALGTALL  A+
Sbjct:   86 RPAVFFGAVAGAFATVDCIAEEARGERDSWNAAIGGAAAGMLMAAKTRRFDYMAGAALGTALLCFAV 152
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1722.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S2FYU3_9STRA2.090e-1243.24Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A484LJY1_9ASTE2.240e-642.65Uncharacterized protein n=3 Tax=Cuscuta sect. Clei... [more]
A0A7S2LNR3_9STRA6.470e-544.78Mitochondrial import inner membrane translocase su... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1722contigP-wetherbeei_contig1722:4154..4531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog112098.XP_008613991.1
PFAMsTim17
Model size378
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.03e-11
EggNOG OGs2CY3B@1|root,2S1PZ@2759|Eukaryota
DescriptionTim17/Tim22/Tim23/Pmp24 family
Cds size378
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186111.3524256-CDS-P-wetherbeei_contig1722:4153..45311683186111.3524256-CDS-P-wetherbeei_contig1722:4153..4531Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1722 4154..4531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1722.6.1prot_P-wetherbeei_contig1722.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1722 4154..4531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1722.6.1

>prot_P-wetherbeei_contig1722.6.1 ID=prot_P-wetherbeei_contig1722.6.1|Name=mRNA_P-wetherbeei_contig1722.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
AGVSWGVVNEFWAGFPADGATWRERSAAVGSMQGGLKVAAPSLLRSVGRS
SASFATVIGVLNGVSCSMEKLRGERDWRNQAVGGFAAGALIAMSSRNPTV
IMSSALGTALLAGALHNVLAPKQPT*
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mRNA from alignment at P-wetherbeei_contig1722:4154..4531-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1722.6.1 ID=mRNA_P-wetherbeei_contig1722.6.1|Name=mRNA_P-wetherbeei_contig1722.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig1722:4154..4531- (Phaeothamnion wetherbeei SAG_119_79)
GCAGGTGTTTCGTGGGGAGTCGTAAACGAGTTTTGGGCTGGGTTCCCTGC
CGATGGAGCAACCTGGCGTGAAAGAAGCGCAGCGGTGGGAAGCATGCAGG
GCGGGCTGAAGGTCGCAGCACCGTCGCTCCTTCGAAGCGTGGGGCGCAGC
TCTGCGTCGTTTGCCACGGTCATTGGCGTGCTGAACGGGGTGAGCTGCAG
CATGGAAAAACTGAGGGGGGAGCGCGACTGGAGAAATCAGGCGGTCGGCG
GCTTCGCCGCCGGTGCCTTGATCGCGATGAGCTCACGGAACCCCACGGTC
ATCATGTCCAGCGCGCTTGGAACGGCGCTACTAGCCGGCGCGTTACACAA
TGTTCTCGCTCCGAAGCAGCCAACGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1722:4154..4531-

>mRNA_P-wetherbeei_contig1722.6.1 ID=mRNA_P-wetherbeei_contig1722.6.1|Name=mRNA_P-wetherbeei_contig1722.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig1722:4154..4531- (Phaeothamnion wetherbeei SAG_119_79)
GCAGGTGTTTCGTGGGGAGTCGTAAACGAGTTTTGGGCTGGGTTCCCTGC
CGATGGAGCAACCTGGCGTGAAAGAAGCGCAGCGGTGGGAAGCATGCAGG
GCGGGCTGAAGGTCGCAGCACCGTCGCTCCTTCGAAGCGTGGGGCGCAGC
TCTGCGTCGTTTGCCACGGTCATTGGCGTGCTGAACGGGGTGAGCTGCAG
CATGGAAAAACTGAGGGGGGAGCGCGACTGGAGAAATCAGGCGGTCGGCG
GCTTCGCCGCCGGTGCCTTGATCGCGATGAGCTCACGGAACCCCACGGTC
ATCATGTCCAGCGCGCTTGGAACGGCGCTACTAGCCGGCGCGTTACACAA
TGTTCTCGCTCCGAAGCAGCCAACGTGA
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