mRNA_P-wetherbeei_contig172.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig172.1.1
Unique NamemRNA_P-wetherbeei_contig172.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig172.1.1 vs. uniprot
Match: D8LJ86_ECTSI (Leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ86_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.610e-18
Identity = 41/79 (51.90%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    7 RRLANHALQELHESLDGPRWRINTGWLVPGSSVSGWHGVTID-GGRLTGLNLLCNDLAGDLPASLGDLVTLRELNLSYN 240
            RR+AN  LQ+L++ L G  W+   GWL PGS V  WHG+TI   G L  +NL+ NDL G++P SL +L +L+ LNLSYN
Sbjct:   33 RRMANQGLQDLYDWLGGDNWKCRDGWLDPGSDVREWHGLTITTSGDLVSINLISNDLEGEMPESLCNLYSLQHLNLSYN 111          
BLAST of mRNA_P-wetherbeei_contig172.1.1 vs. uniprot
Match: UPI000360351A (hypothetical protein n=1 Tax=Dyadobacter beijingensis TaxID=365489 RepID=UPI000360351A)

HSP 1 Score: 66.2 bits (160), Expect = 7.840e-11
Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = 1
Query:   25 ALQELHESLDGPRWRINTGWLV---PGSSVSGWHGVTIDGGRLTGLNLLCNDLAGDLPASLGDLVTLRELNLSY 237
            AL  L+ + +GP W    GW     PG S  GW+GVT +GGR+TGLNLL + L G +P ++G+L  L+ L L +
Sbjct:   28 ALIALYNATNGPEWYEKAGWNPNGNPGDSPCGWYGVTCEGGRVTGLNLLQSGLDGSIPPAIGNLDQLKTLILGW 101          
BLAST of mRNA_P-wetherbeei_contig172.1.1 vs. uniprot
Match: A0A1I1LDE3_9BACT (Immunoglobulin domain-containing protein n=1 Tax=Spirosoma endophyticum TaxID=662367 RepID=A0A1I1LDE3_9BACT)

HSP 1 Score: 66.2 bits (160), Expect = 8.030e-11
Identity = 36/69 (52.17%), Postives = 43/69 (62.32%), Query Frame = 1
Query:   28 LQELHESLDGPRWRINTGWLVPGSSVSGWHGVTIDG-GRLTGLNLLCNDLAGDLPASLGDLVTLRELNL 231
            L  L+ S  G  W   TGWL  G S  GW+GVT DG GR+TGLNL+ N+L G LP SL  L +L+ L L
Sbjct:  498 LVNLYNSAGGGNWTNKTGWLS-GCSPCGWYGVTCDGNGRVTGLNLINNNLVGTLPTSLSALTSLKSLEL 565          
BLAST of mRNA_P-wetherbeei_contig172.1.1 vs. uniprot
Match: A0A1W9X1W5_9DELT (Fibronectin type-III domain-containing protein n=1 Tax=Desulfobacteraceae bacterium 4572_88 TaxID=1972444 RepID=A0A1W9X1W5_9DELT)

HSP 1 Score: 65.5 bits (158), Expect = 1.420e-10
Identity = 34/75 (45.33%), Postives = 45/75 (60.00%), Query Frame = 1
Query:   25 ALQELHESLDGPRWRINTGWLVPGSSVSGWHGVTIDGG-RLTGLNLLCNDLAGDLPASL-GDLVTLRELNLSYNH 243
            AL   + S  G  W + TGWL  G +   W G+T +GG  +T +NL+ N+L G+LP SL  DL  L+ELNL  NH
Sbjct:   37 ALINFYNSTAGSDWNVKTGWLGNGGTECDWEGITCEGGDTVTAINLVFNNLVGNLPVSLLADLSNLQELNLFGNH 111          
BLAST of mRNA_P-wetherbeei_contig172.1.1 vs. uniprot
Match: A0A239EXT0_9BACT (Repeat domain-containing protein n=1 Tax=Ekhidna lutea TaxID=447679 RepID=A0A239EXT0_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 3.920e-10
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 1
Query:   25 ALQELHESLDGPRWRINTGWLVPGSSVSGWHGVTIDGGRLTGLNLLCNDLAGDLPASLGDLVTLRELNL 231
            AL   ++S +G  W  N  WL PG  V  W GV+++  R+ GL+L  N L+G LP  +GDL +LR LNL
Sbjct: 1340 ALVAFYQSTNGDNWFDNNNWLQPGRYVEEWLGVSVENNRVIGLDLRGNGLSGTLPPEIGDLDSLRVLNL 1408          
BLAST of mRNA_P-wetherbeei_contig172.1.1 vs. uniprot
Match: A0A6L7YXK5_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6L7YXK5_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 5.120e-10
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 1
Query:   25 ALQELHESLDGPRWRINTGWLVPGSSVSGWHGVTID-GGRLTGLNLLCNDLAGDLPASLGDLVTLRELNLS 234
            AL+ L+++ +G  WR N+GWL P + ++ WHGV  D  GR+T L L  N+L G +P  LG+L +LR L LS
Sbjct:   90 ALEALYQAAEGDNWRRNSGWLGP-APLAEWHGVETDEAGRVTTLVLSQNELKGTIPPELGELSSLRRLELS 159          
BLAST of mRNA_P-wetherbeei_contig172.1.1 vs. uniprot
Match: A0A850NLA8_9FLAO (Ig-like domain-containing protein n=1 Tax=Muricauda chongwuensis TaxID=2697365 RepID=A0A850NLA8_9FLAO)

HSP 1 Score: 63.5 bits (153), Expect = 7.230e-10
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 1
Query:   25 ALQELHESLDGPRWRINTG------WLVPGSSVSGWHGVTIDGGRLTGLNLLCNDLAGDLPASLGDLV 210
            ALQ+L+ + +GP W   T       W   G+  S WHGVT+  G +T LNL  N+L G++PAS+GDLV
Sbjct:   29 ALQDLYNATNGPTWISETDVFLGDDWNFAGNVTSDWHGVTVANGHVTELNLESNELEGNIPASIGDLV 96          
BLAST of mRNA_P-wetherbeei_contig172.1.1 vs. uniprot
Match: A0A271IY82_9BACT (Uncharacterized protein n=2 Tax=Rubrivirga marina TaxID=1196024 RepID=A0A271IY82_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 1.340e-9
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 1
Query:   25 ALQELHESLDGPRWRINTGWLVPGSSVSGWHGVTIDGGRLTGLNLLCNDLAGDLPASLGDLVTLREL 225
            AL  L+E+  GP W  +  WL     V+ WHGVT++GGR+T ++L  N L+G LPA +G +  L  L
Sbjct:  422 ALVALYEATGGPNWTTDENWLT--GPVASWHGVTVEGGRVTRISLNENQLSGSLPAEIGQMSRLERL 486          
BLAST of mRNA_P-wetherbeei_contig172.1.1 vs. uniprot
Match: A0A7X8XYY7_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=Flammeovirga agarivorans TaxID=2726742 RepID=A0A7X8XYY7_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 1.340e-9
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query:   25 ALQELHESLDGPRWRINTGWLVPGSSVSGWHGVTIDGGRLTGLNLLCNDLAGDLPASLGDLVTLRELNLSYNHEV 249
            AL  L+  L G  W  N+ WL   + V+ W GVT++ G++TGLNL   +L+G LP ++  L  L+ LNLS N ++
Sbjct:  235 ALTTLYSELKGKIWNDNSNWLK-NTDVNTWEGVTVESGKVTGLNLFNQNLSGILPDAITSLTNLKTLNLSSNPQL 308          
BLAST of mRNA_P-wetherbeei_contig172.1.1 vs. uniprot
Match: A0A1G0B415_9BACT (Uncharacterized protein n=1 Tax=Flavobacteria bacterium RIFCSPLOWO2_12_FULL_35_11 TaxID=1798016 RepID=A0A1G0B415_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 2.300e-9
Identity = 29/69 (42.03%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   13 LANHALQELHESLDGPRWRINTGWLVPGSSVSGWHGVTIDGGRLTGLNLLCNDLAGDLPASLGDLVTLR 219
            L  +AL +LH+S  G  W IN  W +    VS WHG+T++   +T +NL  N+L G +PA++G+L +LR
Sbjct:   25 LEKNALLDLHKSTKGTTWNIN--WDLT-KDVSSWHGITVENNTVTEINLSMNNLTGSIPATIGNLTSLR 90          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig172.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ86_ECTSI1.610e-1851.90Leucine rich repeat protein n=2 Tax=Ectocarpus Tax... [more]
UPI000360351A7.840e-1144.59hypothetical protein n=1 Tax=Dyadobacter beijingen... [more]
A0A1I1LDE3_9BACT8.030e-1152.17Immunoglobulin domain-containing protein n=1 Tax=S... [more]
A0A1W9X1W5_9DELT1.420e-1045.33Fibronectin type-III domain-containing protein n=1... [more]
A0A239EXT0_9BACT3.920e-1044.93Repeat domain-containing protein n=1 Tax=Ekhidna l... [more]
A0A6L7YXK5_9BACT5.120e-1046.48Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A850NLA8_9FLAO7.230e-1045.59Ig-like domain-containing protein n=1 Tax=Muricaud... [more]
A0A271IY82_9BACT1.340e-943.28Uncharacterized protein n=2 Tax=Rubrivirga marina ... [more]
A0A7X8XYY7_9BACT1.340e-941.33T9SS type A sorting domain-containing protein n=1 ... [more]
A0A1G0B415_9BACT2.300e-942.03Uncharacterized protein n=1 Tax=Flavobacteria bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig172contigP-wetherbeei_contig172:33..281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog862515.HMPREF0658_0999
PFAMsCBM_4_9,He_PIG,Ig_3,LRRNT_2,LRR_1,LRR_4,LRR_8,Peptidase_M64,VCBS
Model size249
Max annot lvl976|Bacteroidetes
KEGG koko:K13730
KEGG Pathwayko05100,map05100
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.05e-10
EggNOG OGsCOG4886@1|root,COG4886@2|Bacteria,4NI2K@976|Bacteroidetes,2FVD8@200643|Bacteroidia
DescriptionLeucine rich repeat
Cds size249
COG categoryS
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186110.5924735-CDS-P-wetherbeei_contig172:32..2811683186110.5924735-CDS-P-wetherbeei_contig172:32..281Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig172 33..281 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig172.1.1prot_P-wetherbeei_contig172.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig172 33..281 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig172.1.1

>prot_P-wetherbeei_contig172.1.1 ID=prot_P-wetherbeei_contig172.1.1|Name=mRNA_P-wetherbeei_contig172.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=83bp
MVRRLANHALQELHESLDGPRWRINTGWLVPGSSVSGWHGVTIDGGRLTG
LNLLCNDLAGDLPASLGDLVTLRELNLSYNHEV
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mRNA from alignment at P-wetherbeei_contig172:33..281-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig172.1.1 ID=mRNA_P-wetherbeei_contig172.1.1|Name=mRNA_P-wetherbeei_contig172.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig172:33..281- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGCGTCGGCTGGCGAACCACGCGCTGCAAGAGCTGCACGAGTCGCT GGACGGCCCGCGTTGGCGCATAAACACGGGCTGGCTGGTGCCCGGGAGCA GCGTCAGCGGGTGGCACGGCGTTACCATCGACGGCGGGCGGCTGACGGGG CTCAATCTGCTCTGCAACGACTTGGCAGGGGACCTGCCGGCATCTCTGGG CGACTTGGTGACGCTGCGGGAGCTCAACCTGTCGTACAACCACGAGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig172:33..281-

>mRNA_P-wetherbeei_contig172.1.1 ID=mRNA_P-wetherbeei_contig172.1.1|Name=mRNA_P-wetherbeei_contig172.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig172:33..281- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGCGTCGGCTGGCGAACCACGCGCTGCAAGAGCTGCACGAGTCGCT
GGACGGCCCGCGTTGGCGCATAAACACGGGCTGGCTGGTGCCCGGGAGCA
GCGTCAGCGGGTGGCACGGCGTTACCATCGACGGCGGGCGGCTGACGGGG
CTCAATCTGCTCTGCAACGACTTGGCAGGGGACCTGCCGGCATCTCTGGG
CGACTTGGTGACGCTGCGGGAGCTCAACCTGTCGTACAACCACGAGGTG
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