mRNA_P-wetherbeei_contig17196.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17196.1.1
Unique NamemRNA_P-wetherbeei_contig17196.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17196.1.1 vs. uniprot
Match: Q6XM57_9PHYC (FirrV-1-A30 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM57_9PHYC)

HSP 1 Score: 209 bits (531), Expect = 8.430e-59
Identity = 145/375 (38.67%), Postives = 208/375 (55.47%), Query Frame = 1 
Query:   10 YLNVSSDDRDKALYATSSDCAIDFDKIDTVSSIRLKHAEIPHTRYAISTENNTLYFSEFT-DSAINFYHVQVSEASYTASELGTTLTLSMLCPYGYNTDIPP-SNTYSFSTAGNFGKMAMISSGDVPYALHLADETVTLNTFTLVNTTEALITFFSSRDYLFARGALLTLKLVPYSDREVLAIDLYGANGIRVMGDFSDVDTSTIK-TSTSTMIPYSSINNISLVMGFSDADMTSGSSST--VLGVQTPWYSDVTNLSTVMVTTNLPNFVSTGSTVRFS-SPGLMDRQ-VFTVSKVKDDTHFEVDVDRR-LLWANTSGKLAVASNPAHRFPVASISIFDVDKNVISLTIDLSGPNHDLVPNEQVSFIEFSSPEMS 1110
            YL++SS  RDK  + +S DC I FD I  V  + L + EIPHTRYAI ++NN+LY SE   D   +FY +++    YT S L T+L LS      YN D     N+YS   + + GK+A++SSG VPY +H+  ET+T+  F     + AL++F +  +Y+ A GA+L LKL  + DREV  I   GA  + + GDF+D+ T T+  T +STM+PYSS  N+S  +G  D D+ S   +   VLGVQ+P  +     S   +  + P FVS G +V  S S  ++D    +TVS   DDTHF++ VD   LL  +    L + S+ +    V+ ISI  +D N +++ I       D    E V     SSPEM+
Sbjct:   25 YLSLSSASRDKNTFTSSDDCEIAFDDIHNVIGLELVNFEIPHTRYAIDSDNNSLYISEQVGDQLYHFYGLRLGTGGYTISNLCTSLELSQQAAMPYNGDTTGLMNSYSIMASQSVGKVAIVSSGTVPYNIHVCTETLTVTHFDKQGDSSALVSFLAPYEYILAPGAMLMLKLHTHLDREVQVIATEGARTVELFGDFTDLTTETLDGTDSSTMVPYSSFQNVSDTLGLGDTDLVSDVDTAFEVLGVQSPIAT-----SNPRILVDFPIFVSPGDSVSISDSSSMLDLGGPYTVSSTYDDTHFDIYVDANTLLDVDEDTDLQITSDKSTFSSVSDISITGIDNNTVTVLIQTFEVT-DYGVGETVYLTGLSSPEMT 393
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BLAST of mRNA_P-wetherbeei_contig17196.1.1 vs. uniprot
Match: B5LWJ7_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWJ7_9PHYC)

HSP 1 Score: 208 bits (530), Expect = 9.230e-59
Identity = 147/387 (37.98%), Postives = 217/387 (56.07%), Query Frame = 1 
Query:   10 YLNVSSDDRDKALYATSSDCAIDFDKIDTVSSIRLKHAEIPHTRYAISTENNTLYFSEFT-DSAINFYHVQVSEASYTASELGTTLTLSMLCPYGYNTDIPPSNTYSFSTAGNFGKMAMISSGDVPYALHLADETVTLNTFTLVNTTEALITFFSSRDYLFARGALLTLKLVPYSDREVLAIDLYGANGIRVMGDFSDVDTSTIKTSTSTMIPYSSINNISLVMGFSDADMTSGSSST--VLGVQTPWYS--DVTNLSTVMVTTNLPNFVSTGSTVRFS---SPGLMDRQVFTVSKVKDDTHFEVDVDRRLLWANTSGKLAVAS--NPAHRFPVASISIFDVDKNVISLTIDLSGPNHDLVPNEQVSFIEF-SSPEMSSIVATVLSV 1137
            ++++SS  RDK  + +S DC I+FD I  V  I L + E+PHTRYAI   +NTLY SE   D   NF+ ++     YT S L   L LS   P  YN    P N+Y+FS A + GK+A+ISSG +PY +H+  E ++L  F  ++ T++ + F +  +Y+ A GA+LTLKL  Y+DREV   +  G   + V+GDFS  D  T  +++S ++PYSS  NI   +GF   D+ S   +   VLG Q+P+    D  NL +  V +  P FVS G  V  S   S G+ D    TV    DDTH ++ +D   L+ ++SG L VAS  +P+  F V+ I +  V+ N++++ +  S  ++     ++V    F SS E+SS V  V SV
Sbjct:    6 FVSLSSASRDKNAFTSSDDCEINFDDIVNVVGIELLNFEVPHTRYAIDDSDNTLYISEKVGDDVYNFFGLRAGTGGYTISNLAVALELSQKTPIVYNAGTVPLNSYNFSAASSVGKLAIISSGLLPYNVHVCKEVLSLVKFEKISDTKSSVQFIAPFEYILAPGAMLTLKLYNYTDREVQVTETTGPRTVTVLGDFSG-DFETDVSTSSELVPYSSSQNICETLGFGLTDLASDVDTKFDVLGFQSPFSCTVDSENLVSPRVLSKFPIFVSPGDHVVLSGSESFGIADGVHATVVSTYDDTHLDISIDPNRLF-DSSGGLQVASVDSPSETFTVSEIGLDTVEDNLVTIRVSTSEASN-YGEGDEVYITGFESSSELSSTVFQVQSV 389
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17196.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q6XM57_9PHYC8.430e-5938.67FirrV-1-A30 n=1 Tax=Feldmannia irregularis virus a... [more]
B5LWJ7_9PHYC9.230e-5937.98Uncharacterized protein n=1 Tax=Feldmannia species... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17196contigP-wetherbeei_contig17196:7..1143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1137
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-91
Ec32 orthologEc-06_005900.1
Cds size1134
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186110.4590702-CDS-P-wetherbeei_contig17196:6..11401683186110.4590702-CDS-P-wetherbeei_contig17196:6..1140Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17196 7..1140 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186110.4671423-UTR-P-wetherbeei_contig17196:1140..11431683186110.4671423-UTR-P-wetherbeei_contig17196:1140..1143Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17196 1141..1143 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17196.1.1prot_P-wetherbeei_contig17196.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17196 7..1140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17196.1.1

>prot_P-wetherbeei_contig17196.1.1 ID=prot_P-wetherbeei_contig17196.1.1|Name=mRNA_P-wetherbeei_contig17196.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=378bp
MQYLNVSSDDRDKALYATSSDCAIDFDKIDTVSSIRLKHAEIPHTRYAIS
TENNTLYFSEFTDSAINFYHVQVSEASYTASELGTTLTLSMLCPYGYNTD
IPPSNTYSFSTAGNFGKMAMISSGDVPYALHLADETVTLNTFTLVNTTEA
LITFFSSRDYLFARGALLTLKLVPYSDREVLAIDLYGANGIRVMGDFSDV
DTSTIKTSTSTMIPYSSINNISLVMGFSDADMTSGSSSTVLGVQTPWYSD
VTNLSTVMVTTNLPNFVSTGSTVRFSSPGLMDRQVFTVSKVKDDTHFEVD
VDRRLLWANTSGKLAVASNPAHRFPVASISIFDVDKNVISLTIDLSGPNH
DLVPNEQVSFIEFSSPEMSSIVATVLSV
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mRNA from alignment at P-wetherbeei_contig17196:7..1143-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17196.1.1 ID=mRNA_P-wetherbeei_contig17196.1.1|Name=mRNA_P-wetherbeei_contig17196.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1137bp|location=Sequence derived from alignment at P-wetherbeei_contig17196:7..1143- (Phaeothamnion wetherbeei SAG_119_79)
AAAATGCAGTACTTGAATGTCTCTTCTGATGATCGAGACAAAGCATTGTA
CGCCACGTCATCAGACTGCGCGATCGATTTTGATAAAATTGACACTGTTT
CGAGTATCCGCCTGAAACATGCAGAGATTCCACACACTCGATACGCCATT
TCAACAGAAAACAATACGTTATACTTTTCTGAATTTACAGACTCGGCCAT
CAATTTCTACCACGTTCAAGTGTCAGAGGCATCGTACACGGCGTCAGAGC
TTGGAACCACGCTGACGCTGTCCATGCTATGCCCCTATGGATACAACACA
GACATTCCTCCAAGTAATACGTACTCGTTTTCCACAGCAGGGAACTTTGG
TAAAATGGCCATGATAAGTTCGGGAGATGTACCGTATGCCCTCCATCTTG
CAGATGAGACGGTTACCCTCAATACGTTTACCCTGGTCAACACCACGGAA
GCTCTAATCACCTTTTTCTCTTCCAGAGACTATCTGTTTGCGCGCGGCGC
TCTCTTGACATTGAAACTAGTCCCCTACTCCGACCGCGAAGTTCTTGCGA
TTGACCTCTATGGTGCAAACGGAATCCGTGTCATGGGAGATTTTTCAGAC
GTTGATACAAGCACCATCAAAACCTCTACCAGTACAATGATTCCATATTC
CAGCATCAATAACATTTCCCTCGTCATGGGATTTTCGGATGCAGACATGA
CATCGGGCTCCAGTTCTACGGTTCTTGGGGTGCAAACACCGTGGTATTCG
GACGTGACCAATTTGTCCACGGTGATGGTAACAACAAATCTTCCCAATTT
TGTATCAACAGGGAGCACCGTTCGTTTTTCATCGCCTGGATTAATGGATC
GACAAGTCTTTACGGTGAGCAAGGTTAAAGACGATACTCACTTTGAAGTT
GATGTGGACCGCCGATTACTATGGGCCAATACTAGTGGAAAGCTGGCAGT
CGCTTCAAACCCAGCTCACCGGTTCCCCGTGGCGTCGATCTCAATCTTTG
ACGTTGACAAGAATGTGATTTCGCTCACAATTGATCTCTCTGGGCCAAAT
CATGATCTGGTTCCCAACGAGCAAGTTTCCTTCATAGAATTTTCTTCCCC
AGAGATGTCAAGTATTGTTGCAACTGTTCTCTCGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17196:7..1143-

>mRNA_P-wetherbeei_contig17196.1.1 ID=mRNA_P-wetherbeei_contig17196.1.1|Name=mRNA_P-wetherbeei_contig17196.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1134bp|location=Sequence derived from alignment at P-wetherbeei_contig17196:7..1143- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGTACTTGAATGTCTCTTCTGATGATCGAGACAAAGCATTGTACGC
CACGTCATCAGACTGCGCGATCGATTTTGATAAAATTGACACTGTTTCGA
GTATCCGCCTGAAACATGCAGAGATTCCACACACTCGATACGCCATTTCA
ACAGAAAACAATACGTTATACTTTTCTGAATTTACAGACTCGGCCATCAA
TTTCTACCACGTTCAAGTGTCAGAGGCATCGTACACGGCGTCAGAGCTTG
GAACCACGCTGACGCTGTCCATGCTATGCCCCTATGGATACAACACAGAC
ATTCCTCCAAGTAATACGTACTCGTTTTCCACAGCAGGGAACTTTGGTAA
AATGGCCATGATAAGTTCGGGAGATGTACCGTATGCCCTCCATCTTGCAG
ATGAGACGGTTACCCTCAATACGTTTACCCTGGTCAACACCACGGAAGCT
CTAATCACCTTTTTCTCTTCCAGAGACTATCTGTTTGCGCGCGGCGCTCT
CTTGACATTGAAACTAGTCCCCTACTCCGACCGCGAAGTTCTTGCGATTG
ACCTCTATGGTGCAAACGGAATCCGTGTCATGGGAGATTTTTCAGACGTT
GATACAAGCACCATCAAAACCTCTACCAGTACAATGATTCCATATTCCAG
CATCAATAACATTTCCCTCGTCATGGGATTTTCGGATGCAGACATGACAT
CGGGCTCCAGTTCTACGGTTCTTGGGGTGCAAACACCGTGGTATTCGGAC
GTGACCAATTTGTCCACGGTGATGGTAACAACAAATCTTCCCAATTTTGT
ATCAACAGGGAGCACCGTTCGTTTTTCATCGCCTGGATTAATGGATCGAC
AAGTCTTTACGGTGAGCAAGGTTAAAGACGATACTCACTTTGAAGTTGAT
GTGGACCGCCGATTACTATGGGCCAATACTAGTGGAAAGCTGGCAGTCGC
TTCAAACCCAGCTCACCGGTTCCCCGTGGCGTCGATCTCAATCTTTGACG
TTGACAAGAATGTGATTTCGCTCACAATTGATCTCTCTGGGCCAAATCAT
GATCTGGTTCCCAACGAGCAAGTTTCCTTCATAGAATTTTCTTCCCCAGA
GATGTCAAGTATTGTTGCAACTGTTCTCTCGGTG
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