mRNA_P-wetherbeei_contig17177.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17177.1.1
Unique NamemRNA_P-wetherbeei_contig17177.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17177.1.1 vs. uniprot
Match: A0A6H5JS66_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS66_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.150e-14
Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    4 EEDIGKHDLCLADLEAYFHLPLVNVASKLGLSLTMLKRICRGLGLPRWPFRQIQSLEKDMSDLQEKM 204
            EE+     + +  L+ +FH PLV VA +LG+SLTM+KR+CR LG+PRWPFRQI S+ K M DL +++
Sbjct:   23 EEEKESSGITIEVLQQHFHQPLVVVADELGVSLTMIKRLCRKLGMPRWPFRQIDSINKAMEDLHDQL 89
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BLAST of mRNA_P-wetherbeei_contig17177.1.1 vs. uniprot
Match: D8LTZ5_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTZ5_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 1.570e-14
Identity = 34/68 (50.00%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    1 MEEDIGKHDLCLADLEAYFHLPLVNVASKLGLSLTMLKRICRGLGLPRWPFRQIQSLEKDMSDLQEKM 204
            +EE+     + +  L+ +FH PL+ VA +LG+SLTM+KR+CR LG+PRWPFRQI S+ K M DL +++
Sbjct:   22 VEEEKESSGITIEVLQQHFHQPLMAVADELGVSLTMIKRLCRKLGMPRWPFRQIDSINKAMEDLHDQL 89
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BLAST of mRNA_P-wetherbeei_contig17177.1.1 vs. uniprot
Match: R4WEQ7_9CHLO (Minus dominance protein n=1 Tax=Gonium viridistellatum TaxID=51704 RepID=R4WEQ7_9CHLO)

HSP 1 Score: 69.3 bits (168), Expect = 5.820e-13
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   19 KHDLCLADLEAYFHLPLVNVASKLGLSLTMLKRICRGLGLPRWPFRQIQSLE 174
            K DL  ADL +YFHLP+   +  LG+S T LKRICR LG+PRWP+R++ SL+
Sbjct:  110 KADLTSADLSSYFHLPIKEASKSLGISTTYLKRICRQLGIPRWPYRKVASLD 161
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BLAST of mRNA_P-wetherbeei_contig17177.1.1 vs. uniprot
Match: R4WSB3_9CHLO (Minus dominance protein n=1 Tax=Gonium multicoccum TaxID=47784 RepID=R4WSB3_9CHLO)

HSP 1 Score: 68.9 bits (167), Expect = 8.210e-13
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   19 KHDLCLADLEAYFHLPLVNVASKLGLSLTMLKRICRGLGLPRWPFRQIQSLE 174
            K DL  AD+ +YFHLP+   +  LG+S T LKR+CR LG+PRWP+R++ SLE
Sbjct:  110 KADLTSADISSYFHLPIKEASKSLGISTTYLKRLCRQLGIPRWPYRKVASLE 161
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BLAST of mRNA_P-wetherbeei_contig17177.1.1 vs. uniprot
Match: A9ZPM3_GONPE (MID minus dominance-like protein n=3 Tax=Gonium pectorale TaxID=33097 RepID=A9ZPM3_GONPE)

HSP 1 Score: 68.6 bits (166), Expect = 1.130e-12
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:   19 KHDLCLADLEAYFHLPLVNVASKLGLSLTMLKRICRGLGLPRWPFRQIQSLEKDMSD 189
            K DL  AD+ +YFHLP+   +  LG+S T LKRICR LG+PRWP+R++ SL  D+SD
Sbjct:  109 KADLTSADISSYFHLPIKEASKCLGISTTYLKRICRQLGIPRWPYRKVASL--DLSD 163
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BLAST of mRNA_P-wetherbeei_contig17177.1.1 vs. uniprot
Match: R4WEK0_9CHLO (Minus dominance protein n=1 Tax=Gonium quadratum TaxID=51700 RepID=R4WEK0_9CHLO)

HSP 1 Score: 68.2 bits (165), Expect = 1.570e-12
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   19 KHDLCLADLEAYFHLPLVNVASKLGLSLTMLKRICRGLGLPRWPFRQIQSLE 174
            K DL  AD+  YFHLP+   +  LG+S T LKRICR LG+PRWP+R++ SL+
Sbjct:  108 KADLTSADISGYFHLPIKEASKSLGISTTYLKRICRQLGIPRWPYRKVASLD 159
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BLAST of mRNA_P-wetherbeei_contig17177.1.1 vs. uniprot
Match: F2ZAE4_9CHLO (Minus dominance protein n=1 Tax=Gonium maiaprilis TaxID=671768 RepID=F2ZAE4_9CHLO)

HSP 1 Score: 68.2 bits (165), Expect = 1.600e-12
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   19 KHDLCLADLEAYFHLPLVNVASKLGLSLTMLKRICRGLGLPRWPFRQIQSLE 174
            K DL  AD+ ++FHLP+   +  LG+S T LKRICR LG+PRWP+R++ SLE
Sbjct:  109 KADLTSADISSFFHLPIKEASKSLGISTTYLKRICRQLGIPRWPYRKVASLE 160
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BLAST of mRNA_P-wetherbeei_contig17177.1.1 vs. uniprot
Match: A0A218PH05_9CHLO (Minus dominance protein n=1 Tax=Yamagishiella unicocca TaxID=51707 RepID=A0A218PH05_9CHLO)

HSP 1 Score: 67.8 bits (164), Expect = 2.300e-12
Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:   19 KHDLCLADLEAYFHLPLVNVASKLGLSLTMLKRICRGLGLPRWPFRQIQSLEKDM 183
            K DL  +D+ ++FHLP+   + +LGLS T LKRICR LG+PRWP+R++ SL+ D+
Sbjct:  110 KADLTNSDISSFFHLPIKEASRELGLSTTYLKRICRQLGIPRWPYRKVASLDFDV 164
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BLAST of mRNA_P-wetherbeei_contig17177.1.1 vs. uniprot
Match: R4WLR8_9CHLO (Minus dominance protein n=1 Tax=Gonium multicoccum TaxID=47784 RepID=R4WLR8_9CHLO)

HSP 1 Score: 67.8 bits (164), Expect = 2.300e-12
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   19 KHDLCLADLEAYFHLPLVNVASKLGLSLTMLKRICRGLGLPRWPFRQIQSLE 174
            K DL  AD+  YFHLP+   +  LG+S T LKR+CR LG+PRWP+R++ SLE
Sbjct:  110 KADLTSADISNYFHLPIKEASKSLGISTTYLKRLCRQLGIPRWPYRKVASLE 161
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BLAST of mRNA_P-wetherbeei_contig17177.1.1 vs. uniprot
Match: D9CJ55_VOLCA (MID1m n=7 Tax=Volvocaceae TaxID=3065 RepID=D9CJ55_VOLCA)

HSP 1 Score: 67.0 bits (162), Expect = 4.390e-12
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:   19 KHDLCLADLEAYFHLPLVNVASKLGLSLTMLKRICRGLGLPRWPFRQIQSLEKD 180
            K DL  AD+ ++FH+P+ + + +LGLS T LKRICR LG+PRWP+R++ SL  D
Sbjct:  108 KADLTNADISSFFHMPIKDASRELGLSTTYLKRICRQLGIPRWPYRKVASLAFD 161
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17177.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JS66_9PHAE1.150e-1452.24RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LTZ5_ECTSI1.570e-1450.00Putative NIN-like transcription factor n=1 Tax=Ect... [more]
R4WEQ7_9CHLO5.820e-1357.69Minus dominance protein n=1 Tax=Gonium viridistell... [more]
R4WSB3_9CHLO8.210e-1355.77Minus dominance protein n=1 Tax=Gonium multicoccum... [more]
A9ZPM3_GONPE1.130e-1256.14MID minus dominance-like protein n=3 Tax=Gonium pe... [more]
R4WEK0_9CHLO1.570e-1255.77Minus dominance protein n=1 Tax=Gonium quadratum T... [more]
F2ZAE4_9CHLO1.600e-1255.77Minus dominance protein n=1 Tax=Gonium maiaprilis ... [more]
A0A218PH05_9CHLO2.300e-1252.73Minus dominance protein n=1 Tax=Yamagishiella unic... [more]
R4WLR8_9CHLO2.300e-1255.77Minus dominance protein n=1 Tax=Gonium multicoccum... [more]
D9CJ55_VOLCA4.390e-1253.70MID1m n=7 Tax=Volvocaceae TaxID=3065 RepID=D9CJ55_... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17177contigP-wetherbeei_contig17177:76..315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LTZ5
PFAMsRWP-RK
Model size240
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.57e-15
EggNOG OGs2E5A6@1|root,2SC46@2759|Eukaryota
DescriptionRWP-RK domain
Cds size240
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186110.0704176-CDS-P-wetherbeei_contig17177:75..3151683186110.0704176-CDS-P-wetherbeei_contig17177:75..315Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17177 76..315 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17177.1.1prot_P-wetherbeei_contig17177.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17177 76..315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17177.1.1

>prot_P-wetherbeei_contig17177.1.1 ID=prot_P-wetherbeei_contig17177.1.1|Name=mRNA_P-wetherbeei_contig17177.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=80bp
MEEDIGKHDLCLADLEAYFHLPLVNVASKLGLSLTMLKRICRGLGLPRWP
FRQIQSLEKDMSDLQEKMCTRLPAAEQSR*
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mRNA from alignment at P-wetherbeei_contig17177:76..315-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17177.1.1 ID=mRNA_P-wetherbeei_contig17177.1.1|Name=mRNA_P-wetherbeei_contig17177.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig17177:76..315- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGAAGACATAGGAAAGCACGACCTTTGCCTCGCTGATCTGGAAGC
GTACTTTCACCTGCCCCTCGTGAACGTTGCGTCGAAGCTCGGCCTCTCCC
TGACGATGCTTAAGAGAATTTGTAGAGGCCTCGGTCTCCCGCGCTGGCCG
TTTCGTCAAATACAATCACTGGAGAAAGACATGTCCGACCTGCAGGAGAA
AATGTGCACGAGGCTTCCGGCTGCCGAGCAGAGCAGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17177:76..315-

>mRNA_P-wetherbeei_contig17177.1.1 ID=mRNA_P-wetherbeei_contig17177.1.1|Name=mRNA_P-wetherbeei_contig17177.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig17177:76..315- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGAAGACATAGGAAAGCACGACCTTTGCCTCGCTGATCTGGAAGC
GTACTTTCACCTGCCCCTCGTGAACGTTGCGTCGAAGCTCGGCCTCTCCC
TGACGATGCTTAAGAGAATTTGTAGAGGCCTCGGTCTCCCGCGCTGGCCG
TTTCGTCAAATACAATCACTGGAGAAAGACATGTCCGACCTGCAGGAGAA
AATGTGCACGAGGCTTCCGGCTGCCGAGCAGAGCAGGTGA
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