mRNA_P-wetherbeei_contig17163.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17163.1.1
Unique NamemRNA_P-wetherbeei_contig17163.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17163.1.1 vs. uniprot
Match: D8LEW1_ECTSI (D27-like_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW1_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.090e-21
Identity = 52/84 (61.90%), Postives = 62/84 (73.81%), Query Frame = 1
Query:   19 GYDGLVDMIFRLNEASFAEKRAVQMAARRTLVSLFPPGLPAAFAALFSKPMPAVSARMNAKVTQMLSEWLMGPSAVNDVEEIDG 270
            GYDGL+DMI  LNE  F  KR  Q A+RR L SLFP  LPA+FA +FSKP PA S+R+NA VT + S+WLMGPS +ND+E  DG
Sbjct:  127 GYDGLMDMIKVLNE-KFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDG 209          
BLAST of mRNA_P-wetherbeei_contig17163.1.1 vs. uniprot
Match: A0A835ZDY9_9STRA (D27-like_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDY9_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 9.580e-21
Identity = 51/91 (56.04%), Postives = 60/91 (65.93%), Query Frame = 1
Query:    1 YDSPIAGYDGLVDMIFRLNEA-SFAEKRAVQMAARRTLVSLFPPGLPAAFAALFSKPMPAVSARMNAKVTQMLSEWLMGPSAVNDVEEIDG 270
            YD    GY GL++MI  LN+   +      Q AAR+ L SLFPP LP AFA +FSKP P  S RMNA VT + S+WLMGPS +NDVE IDG
Sbjct:   16 YDGSDPGYAGLIEMIRSLNDGPGYPTAHDTQQAARKVLQSLFPPWLPGAFAVMFSKPFPQFSCRMNAWVTLVASQWLMGPSKINDVE-IDG 105          
BLAST of mRNA_P-wetherbeei_contig17163.1.1 vs. uniprot
Match: A0A6H5K8Y9_9PHAE (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y9_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 2.580e-20
Identity = 51/80 (63.75%), Postives = 60/80 (75.00%), Query Frame = 1
Query:   19 GYDGLVDMIFRLNEASFAEKRAVQMAARRTLVSLFPPGLPAAFAALFSKPMPAVSARMNAKVTQMLSEWLMGPSAVNDVE 258
            GYDGL+DMI  LNE  F  KR  Q A+RR L SLFP  LPA+FA +FSKP PA S+R+NA VT + S+WLMGPS +NDVE
Sbjct:  127 GYDGLMDMIKVLNE-KFPSKRKTQEASRRVLKSLFPAWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDVE 205          
BLAST of mRNA_P-wetherbeei_contig17163.1.1 vs. uniprot
Match: A0A2J8AIV6_9CHLO (D27-like_C domain-containing protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AIV6_9CHLO)

HSP 1 Score: 85.5 bits (210), Expect = 1.150e-17
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    4 DSPIAGYDGLVDMIFRLNEASFAEKRAVQMAARRTLVSLFPPGLPAAFAALFSKPMPAVSARMNAKVTQMLSEWLMGPSAVNDVEEIDG 270
            DSP++GYD ++D+  RLN   F      Q A R  L++LFP  LP AF  +F++P+P +S RMNA  T +  +WLMGP  VNDVE  DG
Sbjct:  201 DSPLSGYDAIIDLTRRLNN-KFRTAAETQEATRSILIALFPSWLPGAFKVMFARPLPELSCRMNALATALTCQWLMGPCKVNDVETDDG 288          
BLAST of mRNA_P-wetherbeei_contig17163.1.1 vs. uniprot
Match: I0YX40_COCSC (D27-like_C domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YX40_COCSC)

HSP 1 Score: 78.6 bits (192), Expect = 8.330e-16
Identity = 44/84 (52.38%), Postives = 56/84 (66.67%), Query Frame = 1
Query:   19 GYDGLVDMIFRLNEASFAEKRAVQMAARRTLVSLFPPGLPAAFAALFSKPMPAVSARMNAKVTQMLSEWLMGPSAVNDVEEIDG 270
            GYD +VD+   LN  S +  R  Q+  R+ L+SLFP  LP AF  +FSKPMP VS ++NA VT +  +WLMGP  VNDVE +DG
Sbjct:   49 GYDAIVDLTRLLNSKS-SNPRDTQVKTRQILLSLFPSWLPPAFKVMFSKPMPEVSCQLNAWVTMLTCQWLMGPCKVNDVE-LDG 130          
BLAST of mRNA_P-wetherbeei_contig17163.1.1 vs. uniprot
Match: A0A2V0P122_9CHLO (D27-like_C domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P122_9CHLO)

HSP 1 Score: 79.7 bits (195), Expect = 9.370e-16
Identity = 44/89 (49.44%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    4 DSPIAGYDGLVDMIFRLNEASFAEKRAVQMAARRTLVSLFPPGLPAAFAALFSKPMPAVSARMNAKVTQMLSEWLMGPSAVNDVEEIDG 270
            DS + GY  ++D+  RLN   +   R  Q+  R  L SLFP  LP AF A+FS+P+PA+S R+NA  T +  +WLMGP  VNDVE IDG
Sbjct:   58 DSQLQGYPAIIDLTRRLNR-QYPTARDTQLTTRAILNSLFPGWLPGAFRAMFSRPLPALSCRLNAFATALTCQWLMGPCKVNDVE-IDG 144          
BLAST of mRNA_P-wetherbeei_contig17163.1.1 vs. uniprot
Match: A0A8J9RQD0_9CHLO (Beta-carotene isomerase D27, chloroplastic n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RQD0_9CHLO)

HSP 1 Score: 76.3 bits (186), Expect = 3.870e-15
Identity = 44/89 (49.44%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    4 DSPIAGYDGLVDMIFRLNEASFAEKRAVQMAARRTLVSLFPPGLPAAFAALFSKPMPAVSARMNAKVTQMLSEWLMGPSAVNDVEEIDG 270
            DS   GYD +VD+   LN  S    R  Q+  R+ L+SLFP  LP AF  +FSKP+P +S ++NA VT +  +WLMGP  VNDVE +DG
Sbjct:   15 DSNNKGYDAIVDLTRVLNSQS-NNPRDTQIKTRQILLSLFPSWLPPAFKVMFSKPLPDLSCQLNAWVTMLTCQWLMGPCKVNDVE-VDG 101          
BLAST of mRNA_P-wetherbeei_contig17163.1.1 vs. uniprot
Match: A0A5B8MPX5_9CHLO (D27-like_C domain-containing protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MPX5_9CHLO)

HSP 1 Score: 77.0 bits (188), Expect = 5.620e-15
Identity = 39/90 (43.33%), Postives = 60/90 (66.67%), Query Frame = 1
Query:    1 YDSPIAGYDGLVDMIFRLNEASFAEKRAVQMAARRTLVSLFPPGLPAAFAALFSKPMPAVSARMNAKVTQMLSEWLMGPSAVNDVEEIDG 270
            + S + GYDGL++++  LN  S + +  ++  ++  L+SLFPP LP AF  +F+KP P +S  MNA VT +  EWLMGP+ +N+VE  +G
Sbjct:   85 FSSALPGYDGLIEVVRTLNVGSKSSEE-IRALSKLVLLSLFPPWLPPAFRVMFAKPFPELSYLMNAWVTSLCCEWLMGPTTLNEVELEEG 173          
BLAST of mRNA_P-wetherbeei_contig17163.1.1 vs. uniprot
Match: A0A7S3E515_9CHLO (Hypothetical protein n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S3E515_9CHLO)

HSP 1 Score: 75.5 bits (184), Expect = 9.770e-15
Identity = 40/89 (44.94%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    1 YDSPIAGYDGLVDMIFRLNEASFAEKRAVQMAARRTLVSLFPPGLPAAFAALFSKPMPAVSARMNAKVTQMLSEWLMGPSAVNDVEEID 267
            +DSP+ GY GL+++   LN   F     V+  ++R LVSLFP  LP AF A+F++P P  S  MNA VT +  +WLMG + +N+VE +D
Sbjct:   13 FDSPLEGYPGLMEVTKVLN-TRFKTSDEVKAVSKRVLVSLFPSWLPPAFRAMFARPFPEFSLAMNAVVTALACQWLMGRTTLNEVEVVD 100          
BLAST of mRNA_P-wetherbeei_contig17163.1.1 vs. uniprot
Match: A0A5J4YGW2_9CHLO (D27-like_C domain-containing protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YGW2_9CHLO)

HSP 1 Score: 76.6 bits (187), Expect = 9.780e-15
Identity = 37/89 (41.57%), Postives = 59/89 (66.29%), Query Frame = 1
Query:    4 DSPIAGYDGLVDMIFRLNEASFAEKRAVQMAARRTLVSLFPPGLPAAFAALFSKPMPAVSARMNAKVTQMLSEWLMGPSAVNDVEEIDG 270
            D+   GYD ++D+  +LN + +   +  Q A ++ L SLFP  LP AF+A+FS+P+P ++ ++NA VT +  +WLMGP  +ND+E  DG
Sbjct:  112 DTEAQGYDAIIDLTRKLN-SKYKHPKQTQEATKKILKSLFPGWLPGAFSAMFSRPVPQLACQLNAWVTALTCQWLMGPCKINDLELADG 199          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17163.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LEW1_ECTSI1.090e-2161.90D27-like_C domain-containing protein n=1 Tax=Ectoc... [more]
A0A835ZDY9_9STRA9.580e-2156.04D27-like_C domain-containing protein n=1 Tax=Tribo... [more]
A0A6H5K8Y9_9PHAE2.580e-2063.75PROTEASOME_ALPHA_1 domain-containing protein n=1 T... [more]
A0A2J8AIV6_9CHLO1.150e-1748.31D27-like_C domain-containing protein n=1 Tax=Tetra... [more]
I0YX40_COCSC8.330e-1652.38D27-like_C domain-containing protein n=1 Tax=Cocco... [more]
A0A2V0P122_9CHLO9.370e-1649.44D27-like_C domain-containing protein n=1 Tax=Raphi... [more]
A0A8J9RQD0_9CHLO3.870e-1549.44Beta-carotene isomerase D27, chloroplastic n=1 Tax... [more]
A0A5B8MPX5_9CHLO5.620e-1543.33D27-like_C domain-containing protein n=1 Tax=Chlor... [more]
A0A7S3E515_9CHLO9.770e-1544.94Hypothetical protein n=1 Tax=Chloropicon laureae T... [more]
A0A5J4YGW2_9CHLO9.780e-1541.57D27-like_C domain-containing protein n=1 Tax=Trebo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17163contigP-wetherbeei_contig17163:537..1159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LEW1
PFAMsDUF4033
Model size270
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.79e-22
EggNOG OGs28YJ7@1|root,2R5D2@2759|Eukaryota
Ec32 ortholog descriptionDomain of unknown function DUF4033
Ec32 orthologEc-21_005770.1
DescriptionDomain of unknown function (DUF4033)
Cds size270
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186109.820727-CDS-P-wetherbeei_contig17163:536..7461683186109.820727-CDS-P-wetherbeei_contig17163:536..746Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17163 537..746 +
1683186109.8293974-CDS-P-wetherbeei_contig17163:1099..11591683186109.8293974-CDS-P-wetherbeei_contig17163:1099..1159Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17163 1100..1159 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17163.1.1prot_P-wetherbeei_contig17163.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17163 537..1159 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17163.1.1

>prot_P-wetherbeei_contig17163.1.1 ID=prot_P-wetherbeei_contig17163.1.1|Name=mRNA_P-wetherbeei_contig17163.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
YDSPIAGYDGLVDMIFRLNEASFAEKRAVQMAARRTLVSLFPPGLPAAFA
ALFSKPMPAVSARMNAKVTQMLSEWLMGPSAVNDVEEIDG
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mRNA from alignment at P-wetherbeei_contig17163:537..1159+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17163.1.1 ID=mRNA_P-wetherbeei_contig17163.1.1|Name=mRNA_P-wetherbeei_contig17163.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=623bp|location=Sequence derived from alignment at P-wetherbeei_contig17163:537..1159+ (Phaeothamnion wetherbeei SAG_119_79)
TACGACTCCCCGATAGCGGGCTATGACGGGCTGGTGGACATGATCTTCCG TCTCAACGAGGCCAGCTTCGCCGAAAAGCGCGCGGTCCAGATGGCGGCAC GGCGGACGCTTGTGTCGCTCTTCCCGCCCGGGCTGCCGGCGGCGTTTGCG GCACTGTTTTCGAAGCCGATGCCCGCCGTCTCGGCCCGGATGAACGCTAA AGTGACCCAGGTTAGCTAGCAAGCGGATGTCAATGGTACAACAATGAATG GTGTCGATTGAGGACGTTTCACTGGTTCAATTTCCATCGCAGTTCTCCAC CGATTCAAGCTAGTCGACCTATACTCGTGCTTTGCAGCTCCTGGCTGAGA CTTGTGCATCAGCTTGTGGCTGATTTCTGGCAATCGATGCCGGGAAAAGC TCGGTTCTAAGTTCAATGCAGGATCAGGTTTGTAGTTGGTATTCAATTTG TGTGTATGTTTCTTTTCTTTTGCTTCCTATCCTTTGGCGCTGCCACGAAA CCCGCCTTACTTTTCCCTCCTGCGTCGCCATCGCCGCCTCTCCTCCCTGA AACGCCCTGGCAGATGCTGAGCGAGTGGCTGATGGGCCCGTCGGCAGTCA ACGATGTGGAAGAAATCGATGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17163:537..1159+

>mRNA_P-wetherbeei_contig17163.1.1 ID=mRNA_P-wetherbeei_contig17163.1.1|Name=mRNA_P-wetherbeei_contig17163.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig17163:537..1159+ (Phaeothamnion wetherbeei SAG_119_79)
TACGACTCCCCGATAGCGGGCTATGACGGGCTGGTGGACATGATCTTCCG
TCTCAACGAGGCCAGCTTCGCCGAAAAGCGCGCGGTCCAGATGGCGGCAC
GGCGGACGCTTGTGTCGCTCTTCCCGCCCGGGCTGCCGGCGGCGTTTGCG
GCACTGTTTTCGAAGCCGATGCCCGCCGTCTCGGCCCGGATGAACGCTAA
AGTGACCCAGATGCTGAGCGAGTGGCTGATGGGCCCGTCGGCAGTCAACG
ATGTGGAAGAAATCGATGGC
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