mRNA_P-wetherbeei_contig17150.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17150.1.1
Unique NamemRNA_P-wetherbeei_contig17150.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17150.1.1 vs. uniprot
Match: A0A836C8F2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8F2_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.080e-37
Identity = 75/164 (45.73%), Postives = 100/164 (60.98%), Query Frame = 1
Query:   10 FHVQPSSSDIGPCSSVVFQVTFVPTTADAYVVRELEAYVFFKNQRTFRLVKDEVLTPPWCLLVRAHGHSFAGGQLFRLPIYV--HIPQGK---RLNFPPCHVGDATYRTLCITNRGDVSALFRFVIADNDVGGGVGSGDAFSVTPALGLVSPGGFQLVALQFTP 486
            F V+P   DI P  S  F V F P   + Y + E+EA VFFKNQRTFRLV+D  LTPPWC+ V A GH+F G Q          H+ +G+   RL FP CHVGD+ Y+T+ I+N G++ A+FRF +  +D          F V P++GL++ G  QL+AL+FTP
Sbjct:  610 FSVEPGEGDIAPGGSAAFAVRFAPRAENMYYLHEIEACVFFKNQRTFRLVRDATLTPPWCVTVTAVGHTFDGPQFIPQCTLSTSHVSRGQHRQRLEFPACHVGDSVYQTIRISNSGNIPAMFRFELPMDDA-----EAPPFQVKPSVGLLAAGELQLIALKFTP 768          
BLAST of mRNA_P-wetherbeei_contig17150.1.1 vs. uniprot
Match: A0A3R7A883_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7A883_9STRA)

HSP 1 Score: 125 bits (314), Expect = 2.470e-30
Identity = 67/163 (41.10%), Postives = 89/163 (54.60%), Query Frame = 1
Query:    1 TSCFHVQPSSSDIGPCSSVVFQVTFVPTTADAYVVRELEAYVFFKNQRTFRLVKDEVLTPPWCLLVRAHGHSF-AGGQLFRLPIYVHIPQGKRLNFPPCHVGDATYRTLCITNRGDVSALFRFVIADNDVGGGVGSGDAFSVTPALGLVSPGGFQLVALQFTP 486
            T  F + P+  DI P +S  F V+F PT  +AY   ELE++VFFK+ RTFRLV  + LTPPWC++V A GHSF      F   +     +     FPP +VGD+ Y+T+ + N  D  ALF  V     V         F V P +G + P GF LV ++FTP
Sbjct:  214 TPTFRISPTICDIAPGASASFTVSFTPTRGNAYYFAELESHVFFKSNRTFRLVNPQTLTPPWCVVVHASGHSFPTPNSQFLSKVTFETAKPDLCPFPPAYVGDSVYQTVSLVNASDTPALFSVVQDPCRV---------FWVHPPMGRIPPNGFHLVQIRFTP 367          
BLAST of mRNA_P-wetherbeei_contig17150.1.1 vs. uniprot
Match: A0A024T9P0_9STRA (ASH domain-containing protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T9P0_9STRA)

HSP 1 Score: 125 bits (313), Expect = 3.830e-30
Identity = 67/160 (41.88%), Postives = 90/160 (56.25%), Query Frame = 1
Query:   10 FHVQPSSSDIGPCSSVVFQVTFVPTTADAYVVRELEAYVFFKNQRTFRLVKDEVLTPPWCLLVRAHGHSFAGGQLFRLPIYVHIPQGKRL-NFPPCHVGDATYRTLCITNRGDVSALFRFVIADNDVGGGVGSGDAFSVTPALGLVSPGGFQLVALQFTP 486
            F + P + D+ P +SV F VTF P  A+AY   ELE++V+FK+ RTFRLV  E  TPPWC++V A GHSF       L     +     +  FPP HVGD+ ++T+ ++N  D  ALF  V   + V         F V PA GL+   GF LV ++FTP
Sbjct:  599 FRISPGACDVAPGASVEFIVTFDPCHANAYYFAELESHVYFKSNRTFRLVNPETFTPPWCVVVYASGHSFGSSDSQFLSKVTFVTAKDHVCPFPPAHVGDSVFQTVALSNASDTPALFSVVQDPSRV---------FWVHPASGLIPANGFHLVQIRFTP 749          
BLAST of mRNA_P-wetherbeei_contig17150.1.1 vs. uniprot
Match: A0A397BTW4_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BTW4_9STRA)

HSP 1 Score: 124 bits (311), Expect = 6.720e-30
Identity = 67/163 (41.10%), Postives = 88/163 (53.99%), Query Frame = 1
Query:    1 TSCFHVQPSSSDIGPCSSVVFQVTFVPTTADAYVVRELEAYVFFKNQRTFRLVKDEVLTPPWCLLVRAHGHSF-AGGQLFRLPIYVHIPQGKRLNFPPCHVGDATYRTLCITNRGDVSALFRFVIADNDVGGGVGSGDAFSVTPALGLVSPGGFQLVALQFTP 486
            T  F + P+  DI P +S  F V+F PT  +AY   ELE++VFFK+ RTFRLV  + LTPPWC++V A GHSF      F   +     +     FPP +VGD+ Y T+ + N  D  ALF  V     V         F V P +G + P GF LV ++FTP
Sbjct:   81 TPTFRIWPTICDIAPGASASFTVSFTPTRGNAYYFAELESHVFFKSNRTFRLVNPQTLTPPWCVVVHASGHSFPTPNSQFLSKVTFETAKPDLCPFPPAYVGDSVYETVSLVNASDTPALFSVVQDPCRV---------FWVHPPMGRIPPNGFHLVQIRFTP 234          
BLAST of mRNA_P-wetherbeei_contig17150.1.1 vs. uniprot
Match: A0A425CU65_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425CU65_9STRA)

HSP 1 Score: 124 bits (311), Expect = 6.970e-30
Identity = 67/163 (41.10%), Postives = 88/163 (53.99%), Query Frame = 1
Query:    1 TSCFHVQPSSSDIGPCSSVVFQVTFVPTTADAYVVRELEAYVFFKNQRTFRLVKDEVLTPPWCLLVRAHGHSF-AGGQLFRLPIYVHIPQGKRLNFPPCHVGDATYRTLCITNRGDVSALFRFVIADNDVGGGVGSGDAFSVTPALGLVSPGGFQLVALQFTP 486
            T  F + P+  DI P +S  F V+F PT  +AY   ELE++VFFK+ RTFRLV  + LTPPWC++V A GHSF      F   +     +     FPP +VGD+ Y T+ + N  D  ALF  V     V         F V P +G + P GF LV ++FTP
Sbjct:  358 TPTFRIWPTICDIAPGASASFTVSFTPTRGNAYYFAELESHVFFKSNRTFRLVNPQTLTPPWCVVVHASGHSFPTPNSQFLSKVTFETAKPDLCPFPPAYVGDSVYETVSLVNASDTPALFSVVQDPCRV---------FWVHPPMGRIPPNGFHLVQIRFTP 511          
BLAST of mRNA_P-wetherbeei_contig17150.1.1 vs. uniprot
Match: W4FGI1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FGI1_9STRA)

HSP 1 Score: 124 bits (311), Expect = 7.130e-30
Identity = 67/163 (41.10%), Postives = 88/163 (53.99%), Query Frame = 1
Query:    1 TSCFHVQPSSSDIGPCSSVVFQVTFVPTTADAYVVRELEAYVFFKNQRTFRLVKDEVLTPPWCLLVRAHGHSF-AGGQLFRLPIYVHIPQGKRLNFPPCHVGDATYRTLCITNRGDVSALFRFVIADNDVGGGVGSGDAFSVTPALGLVSPGGFQLVALQFTP 486
            T  F + P+  DI P +S  F V+F PT  +AY   ELE++VFFK+ RTFRLV  + LTPPWC++V A GHSF      F   +     +     FPP +VGD+ Y T+ + N  D  ALF  V     V         F V P +G + P GF LV ++FTP
Sbjct:  610 TPTFRIWPTICDIAPGASASFTVSFTPTRGNAYYFAELESHVFFKSNRTFRLVNPQTLTPPWCVVVHASGHSFPTPNSQFLSKVTFETAKPDLCPFPPAYVGDSVYETVSLVNASDTPALFSVVQDPCRV---------FWVHPPMGRIPPNGFHLVQIRFTP 763          
BLAST of mRNA_P-wetherbeei_contig17150.1.1 vs. uniprot
Match: A0A397AD31_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AD31_9STRA)

HSP 1 Score: 124 bits (311), Expect = 7.230e-30
Identity = 67/163 (41.10%), Postives = 88/163 (53.99%), Query Frame = 1
Query:    1 TSCFHVQPSSSDIGPCSSVVFQVTFVPTTADAYVVRELEAYVFFKNQRTFRLVKDEVLTPPWCLLVRAHGHSF-AGGQLFRLPIYVHIPQGKRLNFPPCHVGDATYRTLCITNRGDVSALFRFVIADNDVGGGVGSGDAFSVTPALGLVSPGGFQLVALQFTP 486
            T  F + P+  DI P +S  F V+F PT  +AY   ELE++VFFK+ RTFRLV  + LTPPWC++V A GHSF      F   +     +     FPP +VGD+ Y T+ + N  D  ALF  V     V         F V P +G + P GF LV ++FTP
Sbjct: 1490 TPTFRIWPTICDIAPGASASFTVSFTPTRGNAYYFAELESHVFFKSNRTFRLVNPQTLTPPWCVVVHASGHSFPTPNSQFLSKVTFETAKPDLCPFPPAYVGDSVYETVSLVNASDTPALFSVVQDPCRV---------FWVHPPMGRIPPNGFHLVQIRFTP 1643          
BLAST of mRNA_P-wetherbeei_contig17150.1.1 vs. uniprot
Match: A0A6G0WV66_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WV66_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.320e-29
Identity = 65/160 (40.62%), Postives = 90/160 (56.25%), Query Frame = 1
Query:   10 FHVQPSSSDIGPCSSVVFQVTFVPTTADAYVVRELEAYVFFKNQRTFRLVKDEVLTPPWCLLVRAHGHSFAGGQL-FRLPIYVHIPQGKRLNFPPCHVGDATYRTLCITNRGDVSALFRFVIADNDVGGGVGSGDAFSVTPALGLVSPGGFQLVALQFTP 486
            F + P S DI P +S  F V F P   +AY   ELE++V+FK+ RTFRLV  E  TPPWC++V A GHSF+ G+  F   +     +     FPP H+GD+ ++T+ + N  D  ALF  V   ++V         F V P+ GL+   GF LV ++FTP
Sbjct:  593 FRISPRSCDIAPGASADFTVHFDPHETNAYYFAELESHVYFKSNRTFRLVNPETFTPPWCVIVHASGHSFSSGESQFLSKVTFATAKEGLCPFPPAHLGDSVFQTVSLLNASDTPALFSVVQDPSEV---------FWVHPSSGLIPANGFHLVQIRFTP 743          
BLAST of mRNA_P-wetherbeei_contig17150.1.1 vs. uniprot
Match: A0A329SLQ1_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SLQ1_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.470e-29
Identity = 65/162 (40.12%), Postives = 90/162 (55.56%), Query Frame = 1
Query:    4 SCFHVQPSSSDIGPCSSVVFQVTFVPTTADAYVVRELEAYVFFKNQRTFRLVKDEVLTPPWCLLVRAHGHSFAGGQLFRLPIYVHIPQGKRLNFPPCHVGDATYRTLCITNRGDVSALFRFVIADNDVGGGVGSGDAFSVTPALGLVSPGGFQLVALQFTPQ 489
            S F V P SSDI   ++  F+V F PT  + Y   ELEA+  FK+ RTFRLV  +  TPPWCL+V+  G++FA      LP         ++NFPPC++GD+ ++T+ I N  D  A+F FV    +V         FS  P  G +    F LVA++FTP+
Sbjct:  620 SVFQVYPPSSDIAAGATAEFRVAFQPTRINTYYFAELEAFASFKSNRTFRLVNVDAFTPPWCLVVKTCGNTFASPTEQFLPKISFQVMKNKVNFPPCYLGDSVFQTVMIENASDTPAVFAFVEDPAEV---------FSCKPMYGYIEAKSFHLVAIRFTPR 772          
BLAST of mRNA_P-wetherbeei_contig17150.1.1 vs. uniprot
Match: G4ZL80_PHYSP (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=G4ZL80_PHYSP)

HSP 1 Score: 122 bits (307), Expect = 2.470e-29
Identity = 64/162 (39.51%), Postives = 92/162 (56.79%), Query Frame = 1
Query:    4 SCFHVQPSSSDIGPCSSVVFQVTFVPTTADAYVVRELEAYVFFKNQRTFRLVKDEVLTPPWCLLVRAHGHSFAGGQLFRLPIYVHIPQGKRLNFPPCHVGDATYRTLCITNRGDVSALFRFVIADNDVGGGVGSGDAFSVTPALGLVSPGGFQLVALQFTPQ 489
            S F V PSSSDI   ++  F+V F P+  ++Y   ELEA+  FK+ RTFRLV  +  TPPWC++ +  G++FA      LP         ++NFPPC++GD+ ++T+ I N  D  ALF FV    +V         FS  P+ G +    F LVA++FTP+
Sbjct:  620 SVFQVFPSSSDIAAGATAEFRVAFQPSRVNSYYFAELEAFASFKSNRTFRLVNVDTFTPPWCMVAKTCGNTFASPTEQFLPKISFRLMKNKVNFPPCYLGDSVFQTIMIENASDTPALFAFVEDPAEV---------FSCKPSCGYIEAKSFHLVAIRFTPR 772          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17150.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8F2_9STRA1.080e-3745.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A3R7A883_9STRA2.470e-3041.10Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A024T9P0_9STRA3.830e-3041.88ASH domain-containing protein n=3 Tax=Aphanomyces ... [more]
A0A397BTW4_9STRA6.720e-3041.10Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A425CU65_9STRA6.970e-3041.10Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4FGI1_9STRA7.130e-3041.10Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A397AD31_9STRA7.230e-3041.10Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6G0WV66_9STRA1.320e-2940.63Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A329SLQ1_9STRA2.470e-2940.12Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
G4ZL80_PHYSP2.470e-2939.51Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17150contigP-wetherbeei_contig17150:1..1037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008880528.1
Preferred nameCCDC108
PFAMsASH,PapD-like
Model size489
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue6.28e-31
EggNOG OGs2CMXN@1|root,2QSJW@2759|Eukaryota
Cds size489
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186109.60641-CDS-P-wetherbeei_contig17150:0..2561683186109.60641-CDS-P-wetherbeei_contig17150:0..256Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17150 1..256 -
1683186109.6156504-CDS-P-wetherbeei_contig17150:472..5431683186109.6156504-CDS-P-wetherbeei_contig17150:472..543Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17150 473..543 -
1683186109.6237469-CDS-P-wetherbeei_contig17150:762..8381683186109.6237469-CDS-P-wetherbeei_contig17150:762..838Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17150 763..838 -
1683186109.631422-CDS-P-wetherbeei_contig17150:951..10371683186109.631422-CDS-P-wetherbeei_contig17150:951..1037Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17150 952..1037 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17150.1.1prot_P-wetherbeei_contig17150.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17150 1..1037 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17150.1.1

>prot_P-wetherbeei_contig17150.1.1 ID=prot_P-wetherbeei_contig17150.1.1|Name=mRNA_P-wetherbeei_contig17150.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=163bp
TSCFHVQPSSSDIGPCSSVVFQVTFVPTTADAYVVRELEAYVFFKNQRTF
RLVKDEVLTPPWCLLVRAHGHSFAGGQLFRLPIYVHIPQGKRLNFPPCHV
GDATYRTLCITNRGDVSALFRFVIADNDVGGGVGSGDAFSVTPALGLVSP
GGFQLVALQFTPQ
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mRNA from alignment at P-wetherbeei_contig17150:1..1037-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17150.1.1 ID=mRNA_P-wetherbeei_contig17150.1.1|Name=mRNA_P-wetherbeei_contig17150.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1037bp|location=Sequence derived from alignment at P-wetherbeei_contig17150:1..1037- (Phaeothamnion wetherbeei SAG_119_79)
ACTTCGTGCTTTCACGTGCAGCCATCGAGCTCCGACATCGGGCCCTGCAG CTCGGTGGTCTTCCAAGTGACCTTCGTGCCGACAACGTGAGTATTCCCTC AAATTACCACTAGACGTGATGTAGAAGCAGCGGTTGGTTCTAGTGTTTCC GCACCATTATAATTATCTCTCACCGTGTCTCCCGTACCTCCGCCTGCAGG GCGGATGCCTACGTGGTGCGCGAACTGGAAGCCTATGTCTTCTTTAAGAA CCAGCGCACCTTCCGCCTCGTCAAGGTGCGTTTTATGATGGGGCAACAAT ATTGCAGGACGAAACAGAAGAAGTGAGAACGGGACTGCCTGGTGGCATAT TTTGCCGCTAGGAGCCAGGAGCTTGCCAGATCGCTTTCTGTTTTGCCGGA TCGCTTTCTTTGTTCCCACAGCCATCTCGCCCCGCTTGCAGCCGTCCGCT TCTGTTGCATTAATCGACCCCATCCTTCTCGCTCACACGTGCAGGACGAA GTGTTGACGCCGCCATGGTGTCTGCTCGTGCGGGCCCACGGACATTCCTT CGCTGGCGGCCAGCTGTTGGCGAAGTGCGCCCTGAGCTCGGCCAAAACGG TGCGGTGTTGCAAAGCAGCTAGACTGCTTTGTCGTTTCCGGCTCTTCTGG AAGGCGCAAGTCTTTCAGCTTTGCACGGCGCGACGGACACTGTGTCCTCC GTTTTTTCAGTGCTGCTTCCCACCTGCTGCTCTTTTGCAATCTTGTGGAA CAAATGAACAAACCGCCCGTAATAACTTAAGCTTTCGGTTGCCCATCTAT GTGCATATCCCGCAGGGCAAGCGGCTCAACTTCCCGCCGTGCCACGTCGG GGACGCCACCTACCGGACGCTCTGCATCACCAACCGCGGTGACGTGTCGG CGCTTTTCCGCTTCGTTATCGCGGACAACGATGTCGGCGGCGGCGTCGGC AGCGGCGATGCCTTTAGTGTCACGCCTGCCCTGGGGCTTGTGTCGCCGGG CGGCTTCCAGCTGGTGGCGCTACAGTTCACTCCGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17150:1..1037-

>mRNA_P-wetherbeei_contig17150.1.1 ID=mRNA_P-wetherbeei_contig17150.1.1|Name=mRNA_P-wetherbeei_contig17150.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig17150:1..1037- (Phaeothamnion wetherbeei SAG_119_79)
ACTTCGTGCTTTCACGTGCAGCCATCGAGCTCCGACATCGGGCCCTGCAG
CTCGGTGGTCTTCCAAGTGACCTTCGTGCCGACAACGGCGGATGCCTACG
TGGTGCGCGAACTGGAAGCCTATGTCTTCTTTAAGAACCAGCGCACCTTC
CGCCTCGTCAAGGACGAAGTGTTGACGCCGCCATGGTGTCTGCTCGTGCG
GGCCCACGGACATTCCTTCGCTGGCGGCCAGCTCTTTCGGTTGCCCATCT
ATGTGCATATCCCGCAGGGCAAGCGGCTCAACTTCCCGCCGTGCCACGTC
GGGGACGCCACCTACCGGACGCTCTGCATCACCAACCGCGGTGACGTGTC
GGCGCTTTTCCGCTTCGTTATCGCGGACAACGATGTCGGCGGCGGCGTCG
GCAGCGGCGATGCCTTTAGTGTCACGCCTGCCCTGGGGCTTGTGTCGCCG
GGCGGCTTCCAGCTGGTGGCGCTACAGTTCACTCCGCAG
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