mRNA_P-wetherbeei_contig17143.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17143.1.1
Unique NamemRNA_P-wetherbeei_contig17143.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17143.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17143contigP-wetherbeei_contig17143:2..1013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1012
Hectar predicted targeting categoryother localisation
Exons1
Cds size507
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186109.3496113-UTR-P-wetherbeei_contig17143:1..3941683186109.3496113-UTR-P-wetherbeei_contig17143:1..394Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17143 2..394 +
1683186109.3669753-UTR-P-wetherbeei_contig17143:901..10131683186109.3669753-UTR-P-wetherbeei_contig17143:901..1013Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17143 902..1013 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186109.3582795-CDS-P-wetherbeei_contig17143:394..9011683186109.3582795-CDS-P-wetherbeei_contig17143:394..901Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17143 395..901 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17143.1.1prot_P-wetherbeei_contig17143.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17143 395..901 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17143.1.1

>prot_P-wetherbeei_contig17143.1.1 ID=prot_P-wetherbeei_contig17143.1.1|Name=mRNA_P-wetherbeei_contig17143.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=169bp
MVLLLFNTPTIVFRPSTGLRNQPNYFKGDSEPRAPKPIPILAHEIASETT
LLANVDKFSEYLPDGRVLDSTATPAGSGDGCISGCMTSPPPITMSGRSDD
GGSVEAPVDDSAATSADDCSSASSGGGGMASWCVDFGKVMIWACNRYSVP
CDGLSKGRSRSQIQHLHV*
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mRNA from alignment at P-wetherbeei_contig17143:2..1013+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17143.1.1 ID=mRNA_P-wetherbeei_contig17143.1.1|Name=mRNA_P-wetherbeei_contig17143.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1012bp|location=Sequence derived from alignment at P-wetherbeei_contig17143:2..1013+ (Phaeothamnion wetherbeei SAG_119_79)
GTGAGATGAAAGAAGTTCCGCCAGTAAAAATTAAAAAAAAAAACACAAAA
CACACAACCCATCCTCTTCCCTTTCGAACCAGGTGTTCCTCCCGTGTCTT
TGCCCCTTTCGGAACTAGTCTTGTCCTTACAGAGCAACGGCCTGCCGCCT
TAGCTCTTTTGCTATTTCGTCAGCCCTACGTCCAAAACGAGGTTGACATT
GAAGTTTCCCGATATTCCAATCGGACTGATTTTTGCCCGTTTCGCCCGGT
CAAACATGACCAGGGACAATTTCGGTGCGTAGCTACAGGGCAAGCTTTGT
TTGCATGACGAGCAATTATGGAAGACCCGTGGTTCTGCCTGCATCACAGA
ATATTCGCTCCCTAACATACCCTTTACAAGCTTGCAGTCGCTTATGGTTC
TTCTCCTCTTTAACACCCCCACGATTGTTTTTAGACCTTCAACAGGTCTG
CGCAACCAACCGAATTATTTCAAGGGCGACAGCGAACCAAGGGCCCCAAA
ACCCATCCCGATCCTGGCGCATGAAATCGCTAGTGAGACAACATTGCTCG
CGAATGTTGACAAGTTCAGCGAGTACCTTCCCGACGGGCGTGTGCTAGAC
TCGACCGCCACGCCTGCTGGATCTGGCGACGGCTGCATTAGCGGCTGCAT
GACATCGCCACCGCCGATAACAATGTCCGGCAGAAGCGACGACGGCGGCA
GCGTGGAGGCCCCTGTCGACGACAGTGCCGCAACCTCAGCCGACGATTGC
AGCTCGGCATCGTCTGGCGGCGGCGGCATGGCATCGTGGTGCGTCGATTT
CGGAAAAGTTATGATTTGGGCTTGTAATCGCTACTCTGTGCCTTGCGATG
GCCTGTCTAAAGGACGGTCGAGATCCCAAATCCAGCACCTTCACGTCTGA
GGCAGGAGTGAAAGAACGCGCGAAGGATAGCTAGATAGTTGTGAATAGTG
AAGTTACAGTAAAGGGGCCTAGACTCTCCATCACGCGCCACGCACATAAA
ATAATGCCGTAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17143:2..1013+

>mRNA_P-wetherbeei_contig17143.1.1 ID=mRNA_P-wetherbeei_contig17143.1.1|Name=mRNA_P-wetherbeei_contig17143.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig17143:2..1013+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTCTTCTCCTCTTTAACACCCCCACGATTGTTTTTAGACCTTCAAC
AGGTCTGCGCAACCAACCGAATTATTTCAAGGGCGACAGCGAACCAAGGG
CCCCAAAACCCATCCCGATCCTGGCGCATGAAATCGCTAGTGAGACAACA
TTGCTCGCGAATGTTGACAAGTTCAGCGAGTACCTTCCCGACGGGCGTGT
GCTAGACTCGACCGCCACGCCTGCTGGATCTGGCGACGGCTGCATTAGCG
GCTGCATGACATCGCCACCGCCGATAACAATGTCCGGCAGAAGCGACGAC
GGCGGCAGCGTGGAGGCCCCTGTCGACGACAGTGCCGCAACCTCAGCCGA
CGATTGCAGCTCGGCATCGTCTGGCGGCGGCGGCATGGCATCGTGGTGCG
TCGATTTCGGAAAAGTTATGATTTGGGCTTGTAATCGCTACTCTGTGCCT
TGCGATGGCCTGTCTAAAGGACGGTCGAGATCCCAAATCCAGCACCTTCA
CGTCTGA
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