mRNA_P-wetherbeei_contig1714.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1714.3.1
Unique NamemRNA_P-wetherbeei_contig1714.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1714.3.1 vs. uniprot
Match: A0A7S3H623_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H623_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.210e-11
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    1 QGDKVLAVFPDTTSFYRATVHQVPKVPSDVEV---HVMVKFEGDEEPATGKVPLRIVPARHVL 180
            +GD VLAVFP+TTSFYRA V + PK+P++V      V+VKFE DE+   G+ P R VPAR VL
Sbjct:   84 RGDSVLAVFPETTSFYRAVVVKTPKMPNNVSSGNWEVIVKFEDDED-EQGRNPARRVPARFVL 145          
BLAST of mRNA_P-wetherbeei_contig1714.3.1 vs. uniprot
Match: A0A4D9CLS8_9STRA (SGF29 C-terminal domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CLS8_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 8.160e-11
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    1 QGDKVLAVFPDTTSFYRATVHQVPKVPSDV--EVHVMVKFEGDEEPATGKVPLRIVPARHVL 180
            + D VLAVFPDTTSFYRA V +VPK        + VMVKFE DE+  TG+ P R VPARHVL
Sbjct:  303 KNDTVLAVFPDTTSFYRAQVTKVPKRAQGGLGPLEVMVKFEDDED-ETGRTPHRRVPARHVL 363          
BLAST of mRNA_P-wetherbeei_contig1714.3.1 vs. uniprot
Match: A0A482S0X9_9ARCH (SGF29 C-terminal domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S0X9_9ARCH)

HSP 1 Score: 61.6 bits (148), Expect = 1.730e-10
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1
Query:    1 QGDKVLAVFPDTTSFYRATVHQVPKVP--SDVEVHVMVKFEGDEEPATGKVPLRIVPARHVL 180
            +GD+V+AVFP+TTSFYRA + + PK P  S+ +  V+V+FE DE+   G VP R VPAR VL
Sbjct:   65 RGDEVMAVFPETTSFYRAVLAKNPKPPLNSNTQWEVVVRFEDDED-ENGNVPPRRVPARFVL 125          
BLAST of mRNA_P-wetherbeei_contig1714.3.1 vs. uniprot
Match: A0A6H5L6S1_9PHAE (SGF29 C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6S1_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.620e-10
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    1 QGDKVLAVFPDTTSFYRATVHQVPKVPSDVEVHVMVKFEGDEEPATGKVPLRIVPARHVL 180
            +G++VLAVFPDTTSFY  T+H+VPK     E  + VKF  D +  TG+ P R +PAR+V+
Sbjct:  164 KGERVLAVFPDTTSFYLGTIHRVPKPAPGAERRIEVKFNDDADD-TGRTPGRSLPARYVV 222          
BLAST of mRNA_P-wetherbeei_contig1714.3.1 vs. uniprot
Match: D7FGV9_ECTSI (SGF29 C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV9_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 5.370e-10
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    1 QGDKVLAVFPDTTSFYRATVHQVPKVPSDVEVHVMVKFEGDEEPATGKVPLRIVPARHVL 180
            +G++VLAVFPDTTSFY  T+H+VPK     E  + VKF  D +  TG+ P R +PAR+V+
Sbjct:  436 KGERVLAVFPDTTSFYLGTIHRVPKPAPGAERRIEVKFNDDADD-TGRTPGRPLPARYVV 494          
BLAST of mRNA_P-wetherbeei_contig1714.3.1 vs. uniprot
Match: A0A482SJ94_9ARCH (SGF29 C-terminal domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJ94_9ARCH)

HSP 1 Score: 57.8 bits (138), Expect = 2.120e-8
Identity = 27/61 (44.26%), Postives = 42/61 (68.85%), Query Frame = 1
Query:    1 QGDKVLAVFPDTTSFYRATVHQVPKVPS-DVEVHVMVKFEGDEEPATGKVPLRIVPARHVL 180
            +GDKV A++PDTT FY A + Q P+  + + E  V+V+FEGDE+P TG  P+  V  ++++
Sbjct:  186 KGDKVFALYPDTTIFYPAVIIQAPRRSALNAEAVVIVQFEGDEDPITGTAPIITVQLKYIV 246          
BLAST of mRNA_P-wetherbeei_contig1714.3.1 vs. uniprot
Match: A0A7S2WVH2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVH2_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.000e-8
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 1
Query:    1 QGDKVLAVFPDTTSFYRATVHQVPK---VPSDVEVHVMVKFEGDEEPATGKVPLRIVPARHVL 180
            +GD VLAVFPDTTSFYR  + +  K     S  +  V V+F+ DE+  TG++P R +PARHV+
Sbjct:  195 KGDTVLAVFPDTTSFYRGRISKPVKNRSASSGGDSEVFVQFDDDED-ETGRLPHRCIPARHVM 256          
BLAST of mRNA_P-wetherbeei_contig1714.3.1 vs. uniprot
Match: D7FR05_ECTSI (SGF29 C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR05_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 3.310e-8
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 1
Query:    1 QGDKVLAVFPDTTSFYRATVHQVPKVPSDVEVHVMVKFEGDEEPATGKVPLRIVPARHVLS 183
            +GD VLAVFPDTTSFYR T+ + P   + +   ++V+FE D +  TGK P R + ++ VL+
Sbjct:  195 KGDDVLAVFPDTTSFYRGTISKQPVRKAGLVAELVVQFEDDADQDTGKTPHRRINSKLVLA 255          
BLAST of mRNA_P-wetherbeei_contig1714.3.1 vs. uniprot
Match: A0A6V1Q8V7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1Q8V7_HETAK)

HSP 1 Score: 55.5 bits (132), Expect = 1.480e-7
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    4 GDKVLAVFPDTTSFYRATVHQVPKVPSDVEVHVMVKFEGDEEPATGKVPLRIVPA 168
            G KVLA++PDTT FY+ TV Q P V  +   + +++FEGDE+ ATG +P R V A
Sbjct:  188 GTKVLAMYPDTTVFYKGTVSQ-PSVSYEGRQYCLIQFEGDEDKATGALPHRTVEA 241          
BLAST of mRNA_P-wetherbeei_contig1714.3.1 vs. uniprot
Match: A0A6U4CAY1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CAY1_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.560e-7
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 1
Query:    1 QGDKVLAVFPDTTSFYRATVHQVPKVPSDVE----VHVMVKFEGDEEPATGKVPLRIVPARHVL 180
            QGD+VLAVFPDTTSFY+A + + P V ++ E      V VKFE DE+  +GK P R + A H++
Sbjct:  153 QGDRVLAVFPDTTSFYKAIISKDP-VKTNAERSPPFEVWVKFEDDED-ESGKTPHRRILAMHIV 214          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1714.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3H623_9STRA2.210e-1157.14Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A4D9CLS8_9STRA8.160e-1161.29SGF29 C-terminal domain-containing protein n=2 Tax... [more]
A0A482S0X9_9ARCH1.730e-1054.84SGF29 C-terminal domain-containing protein n=1 Tax... [more]
A0A6H5L6S1_9PHAE3.620e-1051.67SGF29 C-terminal domain-containing protein n=1 Tax... [more]
D7FGV9_ECTSI5.370e-1051.67SGF29 C-terminal domain-containing protein n=1 Tax... [more]
A0A482SJ94_9ARCH2.120e-844.26SGF29 C-terminal domain-containing protein n=1 Tax... [more]
A0A7S2WVH2_9STRA3.000e-849.21Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D7FR05_ECTSI3.310e-845.90SGF29 C-terminal domain-containing protein n=1 Tax... [more]
A0A6V1Q8V7_HETAK1.480e-750.91Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U4CAY1_9STRA2.560e-750.00Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1714contigP-wetherbeei_contig1714:6248..6654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FGV9
PFAMsDUF1325
Model size183
Max annot lvl2759|Eukaryota
KEGG koko:K03246,ko:K11364
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006325,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0008150,GO:0008152,GO:0009628,GO:0009651,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016573,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019538,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0043966,GO:0043967,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051276,GO:0071704,GO:0071840,GO:1901564
Exons2
Evalue8.8e-11
EggNOG OGsKOG3038@1|root,KOG3038@2759|Eukaryota
Descriptionmethylated histone binding
Cds size183
COG categoryADK
BRITEko00000,ko00001,ko03012,ko03021,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186109.2849238-CDS-P-wetherbeei_contig1714:6247..63641683186109.2849238-CDS-P-wetherbeei_contig1714:6247..6364Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1714 6248..6364 -
1683186109.2942343-CDS-P-wetherbeei_contig1714:6588..66541683186109.2942343-CDS-P-wetherbeei_contig1714:6588..6654Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1714 6589..6654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1714.3.1prot_P-wetherbeei_contig1714.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1714 6248..6654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1714.3.1

>prot_P-wetherbeei_contig1714.3.1 ID=prot_P-wetherbeei_contig1714.3.1|Name=mRNA_P-wetherbeei_contig1714.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=61bp
QGDKVLAVFPDTTSFYRATVHQVPKVPSDVEVHVMVKFEGDEEPATGKVP
LRIVPARHVLS
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mRNA from alignment at P-wetherbeei_contig1714:6248..6654-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1714.3.1 ID=mRNA_P-wetherbeei_contig1714.3.1|Name=mRNA_P-wetherbeei_contig1714.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=407bp|location=Sequence derived from alignment at P-wetherbeei_contig1714:6248..6654- (Phaeothamnion wetherbeei SAG_119_79)
CAGGGCGACAAGGTGCTGGCGGTGTTCCCGGACACGACTTCGTTCTACCG TGCGACGGTGCACCAGGTGATGCGCTCTTTTTTGCCTTTTTGCGCGCCGT CCCGGTTTGATGCTCCCAATCCGTTCTTTTGGCCGAGTTTGGCAGTTCTT TTTGAGAGAGGACAACGCCGACCCTGCAGCGTTGAACCATGGACGTAAAG CCTCGCTCTTTATATTTCTCATCATTCTTCGCGCCATGCTTCCCGTTCCG TATTCTGTCCCTTCTCTCCTCGCCAATCATCAACCCACAGGTGCCGAAGG TACCGAGCGACGTCGAGGTGCATGTGATGGTGAAGTTCGAGGGCGACGAG GAACCCGCCACCGGCAAAGTGCCGCTGCGCATTGTGCCCGCTCGCCACGT CCTCTCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1714:6248..6654-

>mRNA_P-wetherbeei_contig1714.3.1 ID=mRNA_P-wetherbeei_contig1714.3.1|Name=mRNA_P-wetherbeei_contig1714.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig1714:6248..6654- (Phaeothamnion wetherbeei SAG_119_79)
CAGGGCGACAAGGTGCTGGCGGTGTTCCCGGACACGACTTCGTTCTACCG
TGCGACGGTGCACCAGGTGCCGAAGGTACCGAGCGACGTCGAGGTGCATG
TGATGGTGAAGTTCGAGGGCGACGAGGAACCCGCCACCGGCAAAGTGCCG
CTGCGCATTGTGCCCGCTCGCCACGTCCTCTCA
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