mRNA_P-wetherbeei_contig17134.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17134.2.1
Unique NamemRNA_P-wetherbeei_contig17134.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17134.2.1 vs. uniprot
Match: A0A1J5QD70_9ZZZZ (TPR repeat-containing protein YrrB n=1 Tax=mine drainage metagenome TaxID=410659 RepID=A0A1J5QD70_9ZZZZ)

HSP 1 Score: 107 bits (266), Expect = 6.890e-23
Identity = 57/124 (45.97%), Postives = 72/124 (58.06%), Query Frame = 1
Query:   10 GRNDPCPCGSGKKSKKCCSQKLGL--------------SPADINQALDLYTAGSYGELLERAKGLTLNHPQEGQAWKILGIASHVNGQDAIAAFQKAAQLLPDDPEIYNNLGVALEAAQRFSEA 339
            GRNDPCPCGSGKK KKCC  ++                + A+IN  + L+ AG + EL   A+ L   HP  G  WK+L  A    G+DA+AA Q+AAQLLPDD E   NLGVAL+A  +  +A
Sbjct:    6 GRNDPCPCGSGKKYKKCCQDRIDARQSAPGIAAQDPAPTSAEINLLVALFNAGRHAELESLARELLERHPDSGFVWKVLSSALQAMGKDALAAAQRAAQLLPDDAEQQYNLGVALQALGQLEKA 129          
BLAST of mRNA_P-wetherbeei_contig17134.2.1 vs. uniprot
Match: A0A7Y4YR63_9PROT (Tetratricopeptide repeat protein n=1 Tax=Gallionella sp. TaxID=2052161 RepID=A0A7Y4YR63_9PROT)

HSP 1 Score: 106 bits (265), Expect = 7.950e-23
Identity = 56/116 (48.28%), Postives = 76/116 (65.52%), Query Frame = 1
Query:    1 MAIGRNDPCPCGSGKKSKKCCSQKLGLSP---AD-INQALDLYTAGSYGELLERAKGLTLNHPQEGQAWKILGIASHVNGQDAIAAFQKAAQLLPDDPEIYNNLGVALEAAQRFSE 336
            M   RN PCPCGSGKK K CC +K+  SP   AD INQ + LY+AG Y EL  RA  L   +P  G  W++LG A  +  +DA+ AFQK A+L+P++ + + NLGVAL++A R+ +
Sbjct:    1 MKPERNAPCPCGSGKKFKHCCERKVVTSPTPTADVINQHIALYSAGRYAELESRAHTLVEQYPDFGFGWQLLGGALQMQNKDALPAFQKMAELMPNEADAHYNLGVALKSAGRYED 116          
BLAST of mRNA_P-wetherbeei_contig17134.2.1 vs. uniprot
Match: A0A1J5T4U0_9ZZZZ (Protein O-GlcNAc transferase n=1 Tax=mine drainage metagenome TaxID=410659 RepID=A0A1J5T4U0_9ZZZZ)

HSP 1 Score: 105 bits (263), Expect = 1.750e-22
Identity = 56/124 (45.16%), Postives = 74/124 (59.68%), Query Frame = 1
Query:   10 GRNDPCPCGSGKKSKKCCSQKL-------GLSP-------ADINQALDLYTAGSYGELLERAKGLTLNHPQEGQAWKILGIASHVNGQDAIAAFQKAAQLLPDDPEIYNNLGVALEAAQRFSEA 339
            GRNDPCPCGSGKK KKCC  KL        ++P       A++NQ + LY  G Y EL  +A+ L   +   G AWK+LG +  V G++A+ A  KA + LP+D E+YNNLG AL    +F +A
Sbjct:   33 GRNDPCPCGSGKKFKKCCHDKLEGHLDLSSIAPKKAIPSLAEMNQIVALYNEGHYVELESQARLLVEQYANSGFAWKVLGTSLWVQGKEALPALYKATEFLPNDAEVYNNLGNALRDLGQFDKA 156          
BLAST of mRNA_P-wetherbeei_contig17134.2.1 vs. uniprot
Match: A0A6L9KVF1_9PROT (Tetratricopeptide repeat protein n=1 Tax=Ferrovum sp. TaxID=2609467 RepID=A0A6L9KVF1_9PROT)

HSP 1 Score: 102 bits (254), Expect = 2.830e-21
Identity = 54/127 (42.52%), Postives = 71/127 (55.91%), Query Frame = 1
Query:    1 MAIGRNDPCPCGSGKKSKKCCSQKLGL--------------SPADINQALDLYTAGSYGELLERAKGLTLNHPQEGQAWKILGIASHVNGQDAIAAFQKAAQLLPDDPEIYNNLGVALEAAQRFSEA 339
            M  GRND CPCGSGKK KKCC  KL                SP +INQ + L+ +G Y E+   A+ L   +P  G  WK LG A  + G+D++ A QKA +L+PDD E + NLG AL+   +  +A
Sbjct:    1 MNPGRNDSCPCGSGKKYKKCCQHKLAAHIATQTTQPKVSVPSPTEINQFVHLFNSGRYTEMENLARELLERYPGSGFVWKALGAALGMQGKDSLLALQKATELMPDDAEAHYNLGNALKDLGQLDDA 127          
BLAST of mRNA_P-wetherbeei_contig17134.2.1 vs. uniprot
Match: A0A7Y4YS49_9PROT (Tetratricopeptide repeat protein (Fragment) n=1 Tax=Gallionella sp. TaxID=2052161 RepID=A0A7Y4YS49_9PROT)

HSP 1 Score: 95.5 bits (236), Expect = 5.440e-20
Identity = 50/118 (42.37%), Postives = 66/118 (55.93%), Query Frame = 1
Query:    1 MAIGRNDPCPCGSGKKSKKCCSQKLG---LSPADINQALDLYTAGSYGELLERAKGLTLNHPQEGQAWKILGIASHVNGQDAIAAFQKAAQLLPDDPEIYNNLGVALEAAQRFSEATE 345
            M   RN+PCPCGSGKK K CC  K     L+ A++NQ   L   G +  +  RA  L   +P E   WK+L IA  + G+  +AAF++AA LLP D   + NLG AL+   R  EA +
Sbjct:    1 MNPSRNEPCPCGSGKKYKHCCEGKQSVAKLAAAELNQLGMLVNTGQFAVVETRASDLLQQYPDEAGLWKLLAIALQMQGKSGLAAFERAALLLPSDAGAHMNLGNALQGVGRLEEAVQ 118          
BLAST of mRNA_P-wetherbeei_contig17134.2.1 vs. uniprot
Match: A0A7Y4YR72_9PROT (Protein O-GlcNAc transferase n=1 Tax=Gallionella sp. TaxID=2052161 RepID=A0A7Y4YR72_9PROT)

HSP 1 Score: 97.8 bits (242), Expect = 1.090e-19
Identity = 52/120 (43.33%), Postives = 71/120 (59.17%), Query Frame = 1
Query:    1 MAIGRNDPCPCGSGKKSKKCCSQK-----LGLSP--ADINQALDLYTAGSYGELLERAKGLTLNHPQEGQAWKILGIASHVNGQDAIAAFQKAAQLLPDDPEIYNNLGVALEAAQRFSEA 339
            M   RNDPCPCGSGKK K CC +K     +  +P  +++N    L+ +G Y  +   AK L   HP E  AWK+L I+  + G +A+ AFQK A+LLP D   + NLG AL+AA +  +A
Sbjct:    1 MKPSRNDPCPCGSGKKYKHCCERKEEVRAVNSTPTVSELNTLQALFNSGQYAAVETSAKALLDRHPNEPAAWKLLAISLQMQGGNALPAFQKTAELLPADAGAHMNLGNALQAAGQLEKA 120          
BLAST of mRNA_P-wetherbeei_contig17134.2.1 vs. uniprot
Match: UPI001AD30902 (TPR repeat-containing protein YrrB n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=UPI001AD30902)

HSP 1 Score: 96.3 bits (238), Expect = 3.050e-19
Identity = 52/127 (40.94%), Postives = 67/127 (52.76%), Query Frame = 1
Query:    1 MAIGRNDPCPCGSGKKSKKCCSQKLGLSP--------------ADINQALDLYTAGSYGELLERAKGLTLNHPQEGQAWKILGIASHVNGQDAIAAFQKAAQLLPDDPEIYNNLGVALEAAQRFSEA 339
            M  GRNDPCPCGSGKK KKCC +     P              A+ NQ + L+ AG   EL  + + L    P  G AWK LG A  + G+D++ A QKA + LP+D E + NLG  L   ++  EA
Sbjct:    1 MKPGRNDPCPCGSGKKYKKCCQETSEFIPPAPKHSRKSAVPTAAECNQLVALFNAGHLAELETQTRLLLDRCPDSGFAWKALGAALQIQGKDSLFALQKATEFLPNDAEAHYNLGNTLHEMRQLDEA 127          
BLAST of mRNA_P-wetherbeei_contig17134.2.1 vs. uniprot
Match: A0A534HS98_9GAMM (Tetratricopeptide repeat protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A534HS98_9GAMM)

HSP 1 Score: 96.3 bits (238), Expect = 3.280e-19
Identity = 50/118 (42.37%), Postives = 67/118 (56.78%), Query Frame = 1
Query:    1 MAIGRNDPCPCGSGKKSKKCCS-QKLGLSPA------DINQALDLYTAGSYGELLERAKGLTLNHPQEGQAWKILGIASHVNGQDAIAAFQKAAQLLPDDPEIYNNLGVALEAAQRFS 333
            M  GRNDPCPCGSG+K K+CC  Q +  SP       +I   + L   G   E   RA+GL   HP  G  WK L +A    G++A+ A +K  +L+P DPE ++NLG AL A  ++S
Sbjct:    1 MKPGRNDPCPCGSGQKYKRCCGLQPVTASPPAVPGEHEIGALVALINQGRLSEAEHRARGLLKIHPDSGMLWKTLSVALMRQGKEALQALRKTVELMPQDPEAHSNLGTALRARGQWS 118          
BLAST of mRNA_P-wetherbeei_contig17134.2.1 vs. uniprot
Match: A0A534F8Q3_9GAMM (Tetratricopeptide repeat protein n=5 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A534F8Q3_9GAMM)

HSP 1 Score: 96.3 bits (238), Expect = 3.650e-19
Identity = 50/118 (42.37%), Postives = 67/118 (56.78%), Query Frame = 1
Query:    1 MAIGRNDPCPCGSGKKSKKCCS-QKLGLSPA------DINQALDLYTAGSYGELLERAKGLTLNHPQEGQAWKILGIASHVNGQDAIAAFQKAAQLLPDDPEIYNNLGVALEAAQRFS 333
            M  GRNDPCPCGSG+K K+CC  Q +  SP       +I   + L   G   E   RA+GL   HP  G  WK L +A    G++A+ A +K  +L+P DPE ++NLG AL A  ++S
Sbjct:    1 MKPGRNDPCPCGSGQKYKRCCGLQPVTASPPAVPGEHEIGALVALINQGRLSEAEHRARGLLKIHPDSGMLWKTLSVALMRQGKEALQALRKTVELMPQDPEAHSNLGTALRAQGQWS 118          
BLAST of mRNA_P-wetherbeei_contig17134.2.1 vs. uniprot
Match: A0A6L9L1B7_9PROT (Tetratricopeptide repeat protein n=1 Tax=Ferrovum sp. TaxID=2609467 RepID=A0A6L9L1B7_9PROT)

HSP 1 Score: 95.1 bits (235), Expect = 9.260e-19
Identity = 52/127 (40.94%), Postives = 67/127 (52.76%), Query Frame = 1
Query:    1 MAIGRNDPCPCGSGKKSKKCCSQKLGL--------------SPADINQALDLYTAGSYGELLERAKGLTLNHPQEGQAWKILGIASHVNGQDAIAAFQKAAQLLPDDPEIYNNLGVALEAAQRFSEA 339
            M  GRNDPCPCGSGKK KKCC  KL                S  +IN+   L+ +G Y EL  +A+ L   +P  G  WK LG +     + A+   Q+A +LLPDD E + NLG AL+   R  +A
Sbjct:    1 MNTGRNDPCPCGSGKKYKKCCQNKLAAHIATQTTQPKVSEPSSTEINRLALLFNSGRYTELENQARELLEQYPGSGFVWKALGASLKAQRKVALFELQRATELLPDDAEAHGNLGNALKDLGRLDDA 127          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17134.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1J5QD70_9ZZZZ6.890e-2345.97TPR repeat-containing protein YrrB n=1 Tax=mine dr... [more]
A0A7Y4YR63_9PROT7.950e-2348.28Tetratricopeptide repeat protein n=1 Tax=Gallionel... [more]
A0A1J5T4U0_9ZZZZ1.750e-2245.16Protein O-GlcNAc transferase n=1 Tax=mine drainage... [more]
A0A6L9KVF1_9PROT2.830e-2142.52Tetratricopeptide repeat protein n=1 Tax=Ferrovum ... [more]
A0A7Y4YS49_9PROT5.440e-2042.37Tetratricopeptide repeat protein (Fragment) n=1 Ta... [more]
A0A7Y4YR72_9PROT1.090e-1943.33Protein O-GlcNAc transferase n=1 Tax=Gallionella s... [more]
UPI001AD309023.050e-1940.94TPR repeat-containing protein YrrB n=1 Tax=Rhodocy... [more]
A0A534HS98_9GAMM3.280e-1942.37Tetratricopeptide repeat protein (Fragment) n=1 Ta... [more]
A0A534F8Q3_9GAMM3.650e-1942.37Tetratricopeptide repeat protein n=5 Tax=Gammaprot... [more]
A0A6L9L1B7_9PROT9.260e-1940.94Tetratricopeptide repeat protein n=1 Tax=Ferrovum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17134contigP-wetherbeei_contig17134:588..1295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog522306.CAP2UW1_1847
PFAMsGlyco_tranf_2_5,Glyco_transf_41,TPR_1,TPR_11,TPR_16,TPR_19,TPR_2,TPR_4,TPR_8
Model size708
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.74e-15
EggNOG OGsCOG0457@1|root,COG3012@1|root,COG3914@1|root,COG0457@2|Bacteria,COG3012@2|Bacteria,COG3914@2|Bacteria,1MVMG@1224|Proteobacteria,2VH3M@28216|Betaproteobacteria
DescriptionTPR repeat-containing protein
Cds size708
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186109.026507-CDS-P-wetherbeei_contig17134:587..12951683186109.026507-CDS-P-wetherbeei_contig17134:587..1295Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17134 588..1295 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17134.2.1prot_P-wetherbeei_contig17134.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17134 588..1295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17134.2.1

>prot_P-wetherbeei_contig17134.2.1 ID=prot_P-wetherbeei_contig17134.2.1|Name=mRNA_P-wetherbeei_contig17134.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=236bp
MAIGRNDPCPCGSGKKSKKCCSQKLGLSPADINQALDLYTAGSYGELLER
AKGLTLNHPQEGQAWKILGIASHVNGQDAIAAFQKAAQLLPDDPEIYNNL
GVALEAAQRFSEATESYQRATILAPGYPEAHNNLGNALRGLGQDLKAEHC
YLRTLQLRPTYFQAHNNLGITLSGQGKLEEAIKSYQEAVRIQPDYYEGHS
NLGFAWQRLGRFQESIASYRKALEIRPEYALAYSNL
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mRNA from alignment at P-wetherbeei_contig17134:588..1295+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17134.2.1 ID=mRNA_P-wetherbeei_contig17134.2.1|Name=mRNA_P-wetherbeei_contig17134.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=708bp|location=Sequence derived from alignment at P-wetherbeei_contig17134:588..1295+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAATAGGCAGAAACGATCCTTGCCCCTGTGGCAGTGGAAAAAAATC AAAAAAGTGTTGCAGTCAAAAGCTCGGCCTGTCCCCGGCCGACATAAACC AGGCCCTAGACCTCTATACTGCGGGCAGCTATGGAGAGTTACTAGAGCGA GCCAAAGGATTGACCCTGAACCATCCCCAGGAGGGTCAGGCCTGGAAAAT CCTAGGAATCGCATCCCACGTGAACGGTCAGGACGCAATTGCTGCCTTCC AGAAGGCGGCTCAATTGCTGCCTGATGATCCCGAGATCTACAATAATCTG GGCGTGGCTCTGGAAGCCGCGCAACGATTCTCCGAGGCCACGGAAAGTTA TCAGAGAGCCACTATCCTGGCTCCTGGATACCCCGAGGCCCACAACAATC TCGGCAACGCCTTGCGGGGTCTGGGTCAGGACCTCAAAGCGGAGCATTGC TACCTCCGCACCCTTCAACTTCGACCCACATATTTCCAAGCCCATAACAA TTTAGGCATTACCCTCAGCGGTCAGGGCAAGCTTGAGGAAGCCATCAAGA GCTACCAGGAGGCGGTGCGAATTCAACCCGATTACTACGAGGGTCATAGC AATCTCGGCTTCGCCTGGCAAAGGCTCGGTCGCTTTCAAGAGTCTATCGC TAGCTACCGCAAAGCTTTAGAAATCCGCCCGGAGTATGCCCTGGCCTATA GCAATCTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17134:588..1295+

>mRNA_P-wetherbeei_contig17134.2.1 ID=mRNA_P-wetherbeei_contig17134.2.1|Name=mRNA_P-wetherbeei_contig17134.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=708bp|location=Sequence derived from alignment at P-wetherbeei_contig17134:588..1295+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAATAGGCAGAAACGATCCTTGCCCCTGTGGCAGTGGAAAAAAATC
AAAAAAGTGTTGCAGTCAAAAGCTCGGCCTGTCCCCGGCCGACATAAACC
AGGCCCTAGACCTCTATACTGCGGGCAGCTATGGAGAGTTACTAGAGCGA
GCCAAAGGATTGACCCTGAACCATCCCCAGGAGGGTCAGGCCTGGAAAAT
CCTAGGAATCGCATCCCACGTGAACGGTCAGGACGCAATTGCTGCCTTCC
AGAAGGCGGCTCAATTGCTGCCTGATGATCCCGAGATCTACAATAATCTG
GGCGTGGCTCTGGAAGCCGCGCAACGATTCTCCGAGGCCACGGAAAGTTA
TCAGAGAGCCACTATCCTGGCTCCTGGATACCCCGAGGCCCACAACAATC
TCGGCAACGCCTTGCGGGGTCTGGGTCAGGACCTCAAAGCGGAGCATTGC
TACCTCCGCACCCTTCAACTTCGACCCACATATTTCCAAGCCCATAACAA
TTTAGGCATTACCCTCAGCGGTCAGGGCAAGCTTGAGGAAGCCATCAAGA
GCTACCAGGAGGCGGTGCGAATTCAACCCGATTACTACGAGGGTCATAGC
AATCTCGGCTTCGCCTGGCAAAGGCTCGGTCGCTTTCAAGAGTCTATCGC
TAGCTACCGCAAAGCTTTAGAAATCCGCCCGGAGTATGCCCTGGCCTATA
GCAATCTT
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