mRNA_P-wetherbeei_contig17127.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17127.1.1
Unique NamemRNA_P-wetherbeei_contig17127.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17127.1.1 vs. uniprot
Match: A0A835YKN6_9STRA (RING/Ubox like zinc-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKN6_9STRA)

HSP 1 Score: 134 bits (336), Expect = 4.500e-34
Identity = 52/64 (81.25%), Postives = 59/64 (92.19%), Query Frame = 2 
Query:  614 CPLCCEELDLSDKNFLPCPCGYRVCMWCWHHIKEDLNNLCPACRTPYSDDPHAFSAVDRDEIVK 805
            CPLCCEELDLSDKNFLPC CGYRVC+WCWH IK+ +N LCPACR PYSDDPHAF+AVDRD+++K
Sbjct:   14 CPLCCEELDLSDKNFLPCQCGYRVCIWCWHTIKDHMNGLCPACRNPYSDDPHAFAAVDRDDVIK 77
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BLAST of mRNA_P-wetherbeei_contig17127.1.1 vs. uniprot
Match: A0A482RU21_9ARCH (RING-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RU21_9ARCH)

HSP 1 Score: 128 bits (322), Expect = 8.570e-34
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 2 
Query:  614 CPLCCEELDLSDKNFLPCPCGYRVCMWCWHHIKEDLNNLCPACRTPYSDDPHAFSAVDRDE 796
            CPLC EE+D SDKNFLPCPCGY+VCMWCWHHI+E+LN LCPACRTPYS DPHAF+AVDR E
Sbjct:   14 CPLCVEEIDQSDKNFLPCPCGYQVCMWCWHHIRENLNGLCPACRTPYSADPHAFAAVDRTE 74
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BLAST of mRNA_P-wetherbeei_contig17127.1.1 vs. uniprot
Match: A0A7S2GN38_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GN38_9STRA)

HSP 1 Score: 139 bits (351), Expect = 6.220e-33
Identity = 55/64 (85.94%), Postives = 60/64 (93.75%), Query Frame = 2 
Query:  614 CPLCCEELDLSDKNFLPCPCGYRVCMWCWHHIKEDLNNLCPACRTPYSDDPHAFSAVDRDEIVK 805
            CPLCCEELD+SDKNF+PC CGY+VCMWCWHHIK DLN LCPACRTPYSDDPHAFSAVDR E++K
Sbjct:    9 CPLCCEELDISDKNFMPCRCGYQVCMWCWHHIKNDLNGLCPACRTPYSDDPHAFSAVDRQEVLK 72
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BLAST of mRNA_P-wetherbeei_contig17127.1.1 vs. uniprot
Match: A0A8J2SPL8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SPL8_9STRA)

HSP 1 Score: 133 bits (334), Expect = 2.060e-32
Identity = 51/64 (79.69%), Postives = 61/64 (95.31%), Query Frame = 2 
Query:  614 CPLCCEELDLSDKNFLPCPCGYRVCMWCWHHIKEDLNNLCPACRTPYSDDPHAFSAVDRDEIVK 805
            CPLCCEELD+SD+NFLPC CGY+VCMWCWHHIKE+LNNLCPACR PY D+PHAFSAV+++EI++
Sbjct:    9 CPLCCEELDISDQNFLPCKCGYQVCMWCWHHIKENLNNLCPACRNPYHDNPHAFSAVEKEEIMR 72
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BLAST of mRNA_P-wetherbeei_contig17127.1.1 vs. uniprot
Match: A0A7S4D5P1_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5P1_HETAK)

HSP 1 Score: 136 bits (342), Expect = 2.980e-32
Identity = 53/64 (82.81%), Postives = 61/64 (95.31%), Query Frame = 2 
Query:  614 CPLCCEELDLSDKNFLPCPCGYRVCMWCWHHIKEDLNNLCPACRTPYSDDPHAFSAVDRDEIVK 805
            CPLCCEELDLSDKNF+PCPCGYRVCMWCWHHIKE+LN LCPACR+PY+DDPHAF+AV  +E+V+
Sbjct:   23 CPLCCEELDLSDKNFVPCPCGYRVCMWCWHHIKENLNGLCPACRSPYADDPHAFAAVATEEVVE 86
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BLAST of mRNA_P-wetherbeei_contig17127.1.1 vs. uniprot
Match: A0A7S2R121_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R121_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.970e-30
Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 2 
Query:  614 CPLCCEELDLSDKNFLPCPCGYRVCMWCWHHIKEDLNNLCPACRTPYSDDPHAFSAVDRDEIVK 805
            CPLCCEELD+SD  F PC CGY+VCMWCWH IKE    LCPACRTPY DDPH FSAVD +E+VK
Sbjct:    7 CPLCCEELDISDLQFFPCKCGYQVCMWCWHRIKESECGLCPACRTPYGDDPHEFSAVDMEEVVK 70
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BLAST of mRNA_P-wetherbeei_contig17127.1.1 vs. uniprot
Match: A0A7S2HMP0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HMP0_9STRA)

HSP 1 Score: 126 bits (317), Expect = 3.960e-30
Identity = 47/64 (73.44%), Postives = 57/64 (89.06%), Query Frame = 2 
Query:  614 CPLCCEELDLSDKNFLPCPCGYRVCMWCWHHIKEDLNNLCPACRTPYSDDPHAFSAVDRDEIVK 805
            CPLCCE+L   DKNF+PCPCGY+VC+WCWHHIK+DLN LCPACR PYSDDPHA+ AVDR+ +++
Sbjct:    7 CPLCCEDLLAQDKNFIPCPCGYQVCIWCWHHIKDDLNGLCPACRKPYSDDPHAYKAVDRETVLE 70
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BLAST of mRNA_P-wetherbeei_contig17127.1.1 vs. uniprot
Match: D7FLE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLE0_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 4.720e-30
Identity = 48/64 (75.00%), Postives = 58/64 (90.62%), Query Frame = 2 
Query:  614 CPLCCEELDLSDKNFLPCPCGYRVCMWCWHHIKEDLNNLCPACRTPYSDDPHAFSAVDRDEIVK 805
            CPLCCE +DLSDKNF+PCPCGYRVCMWCWH IKE+   LCPACR+ Y+DDPHAF+AVD++E++K
Sbjct:   18 CPLCCEPMDLSDKNFVPCPCGYRVCMWCWHRIKENYTGLCPACRSEYADDPHAFAAVDKEEVIK 81
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BLAST of mRNA_P-wetherbeei_contig17127.1.1 vs. uniprot
Match: A0A7S3NFX2_9STRA (Hypothetical protein n=4 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NFX2_9STRA)

HSP 1 Score: 127 bits (319), Expect = 2.030e-29
Identity = 50/64 (78.12%), Postives = 60/64 (93.75%), Query Frame = 2 
Query:  614 CPLCCEELDLSDKNFLPCPCGYRVCMWCWHHIKEDLNNLCPACRTPYSDDPHAFSAVDRDEIVK 805
            CPLCCEELDLSD+NFLPC CGY+VCM+CW+ IKE+ N LCPACRTPY+DDPHAF+AVDR+E++K
Sbjct:   14 CPLCCEELDLSDQNFLPCKCGYQVCMFCWYRIKENSNGLCPACRTPYADDPHAFAAVDRNEVIK 77
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BLAST of mRNA_P-wetherbeei_contig17127.1.1 vs. uniprot
Match: A0A1E7EU92_9STRA (RING-type domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EU92_9STRA)

HSP 1 Score: 120 bits (302), Expect = 4.430e-29
Identity = 46/64 (71.88%), Postives = 54/64 (84.38%), Query Frame = 2 
Query:  614 CPLCCEELDLSDKNFLPCPCGYRVCMWCWHHIKEDLNNLCPACRTPYSDDPHAFSAVDRDEIVK 805
            CPLCCEELD+SD+ F PC CGY+VCMWCWH I+E  + LCPACRTPY DDPH FSAVD +E++K
Sbjct:    2 CPLCCEELDISDRQFFPCKCGYQVCMWCWHRIRESESGLCPACRTPYGDDPHEFSAVDVEEVLK 65
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17127.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YKN6_9STRA4.500e-3481.25RING/Ubox like zinc-binding domain-containing prot... [more]
A0A482RU21_9ARCH8.570e-3483.61RING-type domain-containing protein n=1 Tax=archae... [more]
A0A7S2GN38_9STRA6.220e-3385.94Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A8J2SPL8_9STRA2.060e-3279.69Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4D5P1_HETAK2.980e-3282.81Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S2R121_9STRA1.970e-3075.00Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S2HMP0_9STRA3.960e-3073.44Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
D7FLE0_ECTSI4.720e-3075.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3NFX2_9STRA2.030e-2978.13Hypothetical protein n=4 Tax=Aureoumbra lagunensis... [more]
A0A1E7EU92_9STRA4.430e-2971.88RING-type domain-containing protein (Fragment) n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17127contigP-wetherbeei_contig17127:347..1452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FLE0
PFAMsRRM_1,zf-RING_4
Model size1018
Max annot lvl2759|Eukaryota
KEGG koko:K10643
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000278,GO:0000288,GO:0000289,GO:0000956,GO:0002682,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010564,GO:0010605,GO:0010629,GO:0010948,GO:0016070,GO:0016071,GO:0016567,GO:0016740,GO:0019222,GO:0019439,GO:0019538,GO:0019787,GO:0019941,GO:0022402,GO:0023052,GO:0030163,GO:0030330,GO:0031570,GO:0031571,GO:0032446,GO:0033554,GO:0034641,GO:0034655,GO:0035556,GO:0036211,GO:0042770,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045595,GO:0045637,GO:0045652,GO:0045786,GO:0045787,GO:0045930,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051239,GO:0051603,GO:0051716,GO:0051726,GO:0051865,GO:0060255,GO:0065007,GO:0070647,GO:0071156,GO:0071158,GO:0071704,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0090068,GO:0090304,GO:0140096,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902400,GO:1902402,GO:1902403,GO:1902806,GO:1902807,GO:1903047,GO:1903706,GO:2000026,GO:2000045,GO:2000134
Exons2
Evalue6.36e-35
EggNOG OGsCOG5175@1|root,KOG2068@2759|Eukaryota
EC2.3.2.27
Descriptionnuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
Cds size435
COG categoryK
BRITEko00000,ko00001,ko01000,ko03019,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186108.7187006-UTR-P-wetherbeei_contig17127:346..7511683186108.7187006-UTR-P-wetherbeei_contig17127:346..751Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17127 347..751 +
1683186108.7321177-UTR-P-wetherbeei_contig17127:839..10171683186108.7321177-UTR-P-wetherbeei_contig17127:839..1017Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17127 840..1017 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186108.7397878-CDS-P-wetherbeei_contig17127:1017..14521683186108.7397878-CDS-P-wetherbeei_contig17127:1017..1452Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17127 1018..1452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17127.1.1prot_P-wetherbeei_contig17127.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17127 1018..1452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17127.1.1

>prot_P-wetherbeei_contig17127.1.1 ID=prot_P-wetherbeei_contig17127.1.1|Name=mRNA_P-wetherbeei_contig17127.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=145bp
MSSSDSDDDQCPLCCEELDLSDKNFLPCPCGYRVCMWCWHHIKEDLNNLC
PACRTPYSDDPHAFSAVDRDEIVKKEKKKKKEAKLQAQQQQAAAARQAAQ
ARQQLAVAAAATPATQQPSLPPPPPGLLGSPAQASPGGAPTAVAA
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mRNA from alignment at P-wetherbeei_contig17127:347..1452+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17127.1.1 ID=mRNA_P-wetherbeei_contig17127.1.1|Name=mRNA_P-wetherbeei_contig17127.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1106bp|location=Sequence derived from alignment at P-wetherbeei_contig17127:347..1452+ (Phaeothamnion wetherbeei SAG_119_79)
TTCTTTCTTCCTCTGGTTTCCACGCGGTTGCGCGCGGCAAAATTTGTAAA
AGATTGAGAAGCCGCTTTTTCGCGATCGACGAGGAGTCACGTACATTACG
CACCAGGACTCGCAGCAGGTGCGCGGTCCCATCGCGTGGTGTCCTTGGTT
TCGTGTTTGGATTTTTGAAGGCTTTGGAGTTTCGTAGCAAAGCGAGCAAG
GATCTGGATTAATGAGCATCAGATCCATCCTCTCTCCCGCTCTTTCGAAG
TCTACGTCGATCCATTCGTAGCGACGCGATCATTTGATTGGTGTTTGGTC
GGTTGTCCCGTAGCCACGGCAGATCGGGCCGCGAGCCTTGTCGTTCTTCG
CTGCGCCTCTCACCAGGCATTCTGAGCCACGGCGGTTGCATTCTCTTCTT
TAGAGGTGGGTGGCGAACGGCGTGACAGTCTCCCATTGCTGCTGTGCTGC
TTTACCTTATTTGTCCTTACCTTCGCCCTCCTCTTCCCCACAGCGAGGAA
AAGTGTATATTTCGTTATTCGGGCGGCCCTCCGCCCGAGTCTGCAAGGAC
GGTGGCCGAGTCAGGAGTCGTGGCCGCGGCCGCTAGGCGCGGCGGCCGCG
ACCGTGCCCGCCAGCAGCAGATTGCAGCCGCTGCCGTTGCCGCCGCCGCT
GCCGCCGCCGCCGCGGCCGCCATGTCGTCCTCCGACAGCGACGATGACCA
GTGCCCCCTCTGCTGCGAGGAGCTCGATCTGTCAGACAAGAACTTTCTGC
CGTGCCCATGCGGCTACCGCGTCTGCATGTGGTGCTGGCACCACATCAAA
GAGGACCTAAACAATCTTTGCCCGGCGTGCCGCACGCCGTACTCGGACGA
CCCGCACGCCTTTTCGGCCGTCGATCGGGACGAAATCGTCAAGAAGGAGA
AGAAGAAAAAGAAGGAGGCAAAGCTGCAGGCCCAGCAGCAGCAGGCCGCC
GCCGCCCGCCAAGCCGCCCAGGCGCGGCAGCAGCTGGCGGTGGCTGCGGC
GGCCACCCCGGCCACGCAACAGCCGTCGCTGCCGCCGCCCCCTCCCGGGC
TGTTGGGGAGCCCCGCGCAGGCATCGCCAGGAGGCGCCCCCACTGCCGTC
GCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17127:347..1452+

>mRNA_P-wetherbeei_contig17127.1.1 ID=mRNA_P-wetherbeei_contig17127.1.1|Name=mRNA_P-wetherbeei_contig17127.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig17127:347..1452+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGTCCTCCGACAGCGACGATGACCAGTGCCCCCTCTGCTGCGAGGA
GCTCGATCTGTCAGACAAGAACTTTCTGCCGTGCCCATGCGGCTACCGCG
TCTGCATGTGGTGCTGGCACCACATCAAAGAGGACCTAAACAATCTTTGC
CCGGCGTGCCGCACGCCGTACTCGGACGACCCGCACGCCTTTTCGGCCGT
CGATCGGGACGAAATCGTCAAGAAGGAGAAGAAGAAAAAGAAGGAGGCAA
AGCTGCAGGCCCAGCAGCAGCAGGCCGCCGCCGCCCGCCAAGCCGCCCAG
GCGCGGCAGCAGCTGGCGGTGGCTGCGGCGGCCACCCCGGCCACGCAACA
GCCGTCGCTGCCGCCGCCCCCTCCCGGGCTGTTGGGGAGCCCCGCGCAGG
CATCGCCAGGAGGCGCCCCCACTGCCGTCGCCGCC
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