mRNA_P-wetherbeei_contig17116.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17116.1.1
Unique NamemRNA_P-wetherbeei_contig17116.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17116.1.1 vs. uniprot
Match: A0A835Z8U9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8U9_9STRA)

HSP 1 Score: 121 bits (304), Expect = 8.580e-29
Identity = 81/194 (41.75%), Postives = 113/194 (58.25%), Query Frame = 3 
Query:    9 GGSATSTLVSGDDDKRAAISRLISHLAETSRAEWSPRVLEECGPALLR--GRLYEQTMASRLARAAGRDERDALERVDAFLLGYVGQERRRASRARVQDVLHAASKSAAAMDAELRHMSAAGEIDEDVREYIRGLVEQEERRRGGTGGGSVGAXXXXXXXXXXXXXXIGTDGEVPPLLSVLRVLRDRIEAEMKT 584
            GG    +++SG ++ R  I+  IS+L    ++ WSP VLE   P LLR    +Y+QTMA R +RA   DER  LERV+AFL GY+ Q+RRRASR +VQ++L AA+     +DA +  +SA+  ID D+ EY+ GLVE EE +R  T G S                          LL+VLR +RDR++AE++T
Sbjct:   82 GGGDIKSVISGGEEDRIRINNFISYLCNLPQSAWSPDVLESHTPDLLRDGSAVYKQTMALRASRARDGDERAKLERVEAFLNGYLQQQRRRASRVKVQEMLGAAAVGPQELDAAMAELSASKGIDSDLVEYVTGLVEAEEMKRMDTDGSSR-------------------------LLAVLRAVRDRLQAELRT 250
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17116.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z8U9_9STRA8.580e-2941.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17116contigP-wetherbeei_contig17116:2..852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size851
Hectar predicted targeting categoryother localisation
Exons1
Cds size537
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186108.394666-UTR-P-wetherbeei_contig17116:1..2731683186108.394666-UTR-P-wetherbeei_contig17116:1..273Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17116 2..273 -
1683186108.410098-UTR-P-wetherbeei_contig17116:810..8521683186108.410098-UTR-P-wetherbeei_contig17116:810..852Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17116 811..852 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186108.4027984-CDS-P-wetherbeei_contig17116:273..8101683186108.4027984-CDS-P-wetherbeei_contig17116:273..810Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17116 274..810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17116.1.1prot_P-wetherbeei_contig17116.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17116 274..810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17116.1.1

>prot_P-wetherbeei_contig17116.1.1 ID=prot_P-wetherbeei_contig17116.1.1|Name=mRNA_P-wetherbeei_contig17116.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=179bp
MTTSEPPSAASSATSPRLRARSGLLASSKSAAPRSSAAASTSRPWRRASP
APLAATSATPWSALTPSCWVTSGRSGAAPLAHACRTCSTPPARAPPPWML
SCATCRRQARLTKTSESTSAGWSSRRSGGAAGLVAGASAPAAGTVSELAA
VAAASGPMARCRRCLACCEYCGIGSRPR*
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mRNA from alignment at P-wetherbeei_contig17116:2..852-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17116.1.1 ID=mRNA_P-wetherbeei_contig17116.1.1|Name=mRNA_P-wetherbeei_contig17116.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=851bp|location=Sequence derived from alignment at P-wetherbeei_contig17116:2..852- (Phaeothamnion wetherbeei SAG_119_79)
CAAGCAGCGGCGGGAGCGCCACGAGCACCCTCGTGAGCGGCGATGACGAC
AAGCGAGCCGCCATCAGCCGCCTCATCAGCCACCTCGCCGAGACTTCGCG
CGCGGAGTGGTCTCCTCGCGTCCTCGAAGAGTGCGGCCCCGCGCTCCTCC
GCGGCCGCCTCTACGAGCAGACCATGGCGTCGCGCCTCGCCCGCGCCGCT
GGCCGCGACGAGCGCGACGCCCTGGAGCGCGTTGACGCCTTCCTGTTGGG
TTACGTCGGGCAGGAGCGGCGCCGCGCCTCTCGCGCACGCGTGCAGGACG
TGCTCCACGCCGCCAGCAAGAGCGCCGCCGCCATGGATGCTGAGCTGCGC
CACATGTCGGCGGCAGGCGAGATTGACGAAGACGTCAGAGAGTACATCCG
CGGGCTGGTCGAGCAGGAGGAGCGGCGGCGCGGCGGGACTGGTGGCGGGA
GCGTCGGCGCCGGCAGCGGGAACGGTGTCGGAGTTAGCGGCAGTGGCGGC
GGCATCGGGACCGATGGCGAGGTGCCGCCGCTGCTTAGCGTGTTGCGAGT
ACTGCGGGATCGGATCGAGGCCGAGATGAAGACTCGGTGAGTTGCGATAG
TTTATGTTCGTCATAGGCGGTTGCCAATTTCCAGCTGTCCTCTAGGCGGA
TGCTTGCCTCTTGCAACCCTGATGAGATTTCGATGGCAGGCCACCCACAT
TCATGTTGGGTTATGCTTATTGCCTCGAAGACTGTTTTGTACGCGCGGTT
CCCGATATGTCAGGCGGTGTTCGTTGCAGTTTGTGAATAGATTAGATGAC
TTCATATAACAAAAAGCAATCTGAGTGCTGCGAGCGTCAGTGTACTGTAT
T
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17116:2..852-

>mRNA_P-wetherbeei_contig17116.1.1 ID=mRNA_P-wetherbeei_contig17116.1.1|Name=mRNA_P-wetherbeei_contig17116.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig17116:2..852- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGACAAGCGAGCCGCCATCAGCCGCCTCATCAGCCACCTCGCCGAG
ACTTCGCGCGCGGAGTGGTCTCCTCGCGTCCTCGAAGAGTGCGGCCCCGC
GCTCCTCCGCGGCCGCCTCTACGAGCAGACCATGGCGTCGCGCCTCGCCC
GCGCCGCTGGCCGCGACGAGCGCGACGCCCTGGAGCGCGTTGACGCCTTC
CTGTTGGGTTACGTCGGGCAGGAGCGGCGCCGCGCCTCTCGCGCACGCGT
GCAGGACGTGCTCCACGCCGCCAGCAAGAGCGCCGCCGCCATGGATGCTG
AGCTGCGCCACATGTCGGCGGCAGGCGAGATTGACGAAGACGTCAGAGAG
TACATCCGCGGGCTGGTCGAGCAGGAGGAGCGGCGGCGCGGCGGGACTGG
TGGCGGGAGCGTCGGCGCCGGCAGCGGGAACGGTGTCGGAGTTAGCGGCA
GTGGCGGCGGCATCGGGACCGATGGCGAGGTGCCGCCGCTGCTTAGCGTG
TTGCGAGTACTGCGGGATCGGATCGAGGCCGAGATGA
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