mRNA_P-wetherbeei_contig17111.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig17111.1.1 vs. uniprot
Match: UPI001D014C45 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Triticum aestivum TaxID=4565 RepID=UPI001D014C45) HSP 1 Score: 162 bits (410), Expect = 4.510e-45 Identity = 80/154 (51.95%), Postives = 106/154 (68.83%), Query Frame = 2
Query: 230 PGMPPHRLQLKIGTPVILLRNLNASGGQANGTRGIVSAMHRTFVECDITTGTNAGRRVYIPRILFTPADSDLPFTLRRRQLPLDIACSLTINKAQGQTLAAVGLYLHTQVFTHGQAYIAFSRVGDPAALTVALPNRYRTPEGNYFDNIVYKEIL 691
PG+P H ++LK+G PV+LLRN+N S G NGTR ++ + + F+E I TGTN G +VYIPRI+ +P+DS PF L+RRQ P+ + ++TINK+QGQ+L VGLYL QVF HGQ Y+A SRV L V + + + E N NIVYKEIL
Sbjct: 138 PGIPDHEIRLKVGLPVMLLRNINQSEGLCNGTRLTITQLGKWFIEAQIITGTNIGNKVYIPRIIMSPSDSKWPFVLKRRQYPISVCFAMTINKSQGQSLKHVGLYLPKQVFIHGQLYVAVSRVTSRDGLKVLISDE-ESKENNSAKNIVYKEIL 290
BLAST of mRNA_P-wetherbeei_contig17111.1.1 vs. uniprot
Match: A0A2I0AB67_9ASPA (ATP-dependent DNA helicase n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AB67_9ASPA) HSP 1 Score: 161 bits (408), Expect = 6.680e-45 Identity = 78/162 (48.15%), Postives = 112/162 (69.14%), Query Frame = 2
Query: 230 PGMPPHRLQLKIGTPVILLRNLNASGGQANGTRGIVSAMHRTFVECDITTGTNAGRRVYIPRILFTPADSDLPFTLRRRQLPLDIACSLTINKAQGQTLAAVGLYLHTQVFTHGQAYIAFSRVGDPAALTVALPNRYRTPEGNYFDNIVYKEILT*IKRSTS 715
PG+P H+L+LK+ TP++LL+NL+ + G NGTR IV+ + +E +I TGTN G +V IPRI+ T + SDLPF ++RRQ P+ +A ++TINK+QGQTL +GL L T +F+HGQ Y+A SR +L V L N + P G + NIVYK++LT + + S
Sbjct: 92 PGLPTHKLELKVNTPIMLLKNLDQTNGLCNGTRLIVTRIGDRVIEAEIITGTNIGEKVIIPRIILTSSKSDLPFIIKRRQYPIKVAYAMTINKSQGQTLQHIGLCLQTPIFSHGQLYVALSRASSVHSLKVLLSNNHDIPYG-FTRNIVYKDVLTDVLQQKS 252
BLAST of mRNA_P-wetherbeei_contig17111.1.1 vs. uniprot
Match: K3YXY4_SETIT (ATP-dependent DNA helicase n=2 Tax=Setaria italica TaxID=4555 RepID=K3YXY4_SETIT) HSP 1 Score: 168 bits (426), Expect = 2.030e-44 Identity = 81/154 (52.60%), Postives = 108/154 (70.13%), Query Frame = 2
Query: 230 PGMPPHRLQLKIGTPVILLRNLNASGGQANGTRGIVSAMHRTFVECDITTGTNAGRRVYIPRILFTPADSDLPFTLRRRQLPLDIACSLTINKAQGQTLAAVGLYLHTQVFTHGQAYIAFSRVGDPAALTVALPNRYRTPEGNYFDNIVYKEIL 691
PG+P H+LQLK+G P++LLRN+N S G NGTR ++ + + F+E I TGTN G +VYIPRI+ +P +S PF L+RRQ P+ + ++TINK+QGQ+L VGLYL QVFTHGQ Y+A SRV L + + + +PE N NIVYKEIL
Sbjct: 525 PGIPNHKLQLKVGLPIMLLRNINQSAGLCNGTRLTITQLGKWFIEAQIITGTNIGNKVYIPRIIMSPTESKWPFVLKRRQYPITVCFAMTINKSQGQSLKNVGLYLPKQVFTHGQLYVAVSRVTSREGLKILISDE-ESPEDNMAKNIVYKEIL 677
BLAST of mRNA_P-wetherbeei_contig17111.1.1 vs. uniprot
Match: K3YD59_SETIT (ATP-dependent DNA helicase n=2 Tax=Setaria italica TaxID=4555 RepID=K3YD59_SETIT) HSP 1 Score: 168 bits (426), Expect = 8.370e-44 Identity = 81/154 (52.60%), Postives = 108/154 (70.13%), Query Frame = 2
Query: 230 PGMPPHRLQLKIGTPVILLRNLNASGGQANGTRGIVSAMHRTFVECDITTGTNAGRRVYIPRILFTPADSDLPFTLRRRQLPLDIACSLTINKAQGQTLAAVGLYLHTQVFTHGQAYIAFSRVGDPAALTVALPNRYRTPEGNYFDNIVYKEIL 691
PG+P H+LQLK+G P++LLRN+N S G NGTR ++ + + F+E I TGTN G +VYIPRI+ +P +S PF L+RRQ P+ + ++TINK+QGQ+L VGLYL QVFTHGQ Y+A SRV L + + + +PE N NIVYKEIL
Sbjct: 1144 PGIPNHKLQLKVGLPIMLLRNINQSAGLCNGTRLTITQLGKWFIEAQIITGTNIGNKVYIPRIIMSPTESKWPFVLKRRQYPITVCFAMTINKSQGQSLKNVGLYLPKQVFTHGQLYVAVSRVTSREGLKILISDE-ESPEDNMAKNIVYKEIL 1296
BLAST of mRNA_P-wetherbeei_contig17111.1.1 vs. uniprot
Match: A0A8I7B9Y8_HORVV (ATP-dependent DNA helicase n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I7B9Y8_HORVV) HSP 1 Score: 159 bits (403), Expect = 3.340e-43 Identity = 75/153 (49.02%), Postives = 106/153 (69.28%), Query Frame = 2
Query: 233 GMPPHRLQLKIGTPVILLRNLNASGGQANGTRGIVSAMHRTFVECDITTGTNAGRRVYIPRILFTPADSDLPFTLRRRQLPLDIACSLTINKAQGQTLAAVGLYLHTQVFTHGQAYIAFSRVGDPAALTVALPNRYRTPEGNYFDNIVYKEIL 691
G+P H L+LK+G P++L+RN+N S G NGTR ++ + + F+E + GTN G ++YIPRI+ +P+DS PF L+RRQ P+ + ++TINK+QGQ+L VGLYL QVFTHGQ Y+A SRV + L + + + R P N NIVYK+IL
Sbjct: 217 GIPDHELRLKVGLPIMLMRNINQSAGLCNGTRLTITQLGKRFIEGRVIQGTNVGDKIYIPRIIMSPSDSKWPFILKRRQYPISVCFAMTINKSQGQSLEKVGLYLQRQVFTHGQLYVAMSRVTNRNGLKILISDEER-PSDNVAKNIVYKDIL 368
BLAST of mRNA_P-wetherbeei_contig17111.1.1 vs. uniprot
Match: A0A6S7PDI6_LACSI (ATP-dependent DNA helicase n=1 Tax=Lactuca saligna TaxID=75948 RepID=A0A6S7PDI6_LACSI) HSP 1 Score: 154 bits (388), Expect = 1.160e-42 Identity = 75/154 (48.70%), Postives = 102/154 (66.23%), Query Frame = 2
Query: 230 PGMPPHRLQLKIGTPVILLRNLNASGGQANGTRGIVSAMHRTFVECDITTGTNAGRRVYIPRILFTPADSDLPFTLRRRQLPLDIACSLTINKAQGQTLAAVGLYLHTQVFTHGQAYIAFSRVGDPAALTVALPNRYRTPEGNYFDNIVYKEIL 691
PG+PPH+L LK+ P++LLRN+N G NGTR IVS + T +E I TGT+ +RVYIPRI F SDLPF R+Q P+ + ++TINK+QGQ+L +G+YL VF HGQ Y+A SR P ++ + L N+ T + N N+VYKE+L
Sbjct: 40 PGIPPHKLLLKVDCPIMLLRNINQKEGLCNGTRMIVSQLLPTLIEATIITGTSIEKRVYIPRIKFIHKSSDLPFVFSRKQFPVKVCYAMTINKSQGQSLRKIGIYLSQPVFAHGQLYVALSRATSPDSIRILL-NKTDTCKNNETKNVVYKELL 192
BLAST of mRNA_P-wetherbeei_contig17111.1.1 vs. uniprot
Match: Q65XV4_ORYSJ (ATP-dependent DNA helicase n=9 Tax=Oryza TaxID=4527 RepID=Q65XV4_ORYSJ) HSP 1 Score: 164 bits (414), Expect = 3.450e-42 Identity = 82/154 (53.25%), Postives = 106/154 (68.83%), Query Frame = 2
Query: 230 PGMPPHRLQLKIGTPVILLRNLNASGGQANGTRGIVSAMHRTFVECDITTGTNAGRRVYIPRILFTPADSDLPFTLRRRQLPLDIACSLTINKAQGQTLAAVGLYLHTQVFTHGQAYIAFSRVGDPAALTVALPNRYRTPEGNYFDNIVYKEIL 691
PGMP H L+LK+G PV+LLRN+N S G NGTR ++ + + F+E I TGT+ G +VYIPRI+ TP +S PF L+RRQ PL + ++TINK+QGQ+L VGLYL QVFTHGQ Y+AFSRV L + L + +P + NIVYKEI
Sbjct: 1373 PGMPNHVLKLKLGLPVMLLRNINQSSGLCNGTRMTITQLGKRFIEAQIITGTHVGEKVYIPRIIMTPTESGWPFLLKRRQYPLSVCFAMTINKSQGQSLNMVGLYLPKQVFTHGQLYVAFSRVTRRDGLRIMLDDN-ESPGEHMVRNIVYKEIF 1525
BLAST of mRNA_P-wetherbeei_contig17111.1.1 vs. uniprot
Match: A0A6D2INS2_9BRAS (ATP-dependent DNA helicase n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2INS2_9BRAS) HSP 1 Score: 151 bits (381), Expect = 4.780e-42 Identity = 80/162 (49.38%), Postives = 106/162 (65.43%), Query Frame = 2
Query: 230 PGMPPHRLQLKIGTPVILLRNLNASGGQANGTRGIVSAMHRTFVECDITTGTNAGRRVYIPRILFTPADSDLPFTLRRRQLPLDIACSLTINKAQGQTLAAVGLYLHTQVFTHGQAYIAFSRVGDPAALTVALPNRYRTPE-GNYFDNIVYKEILT*IKRST 712
PG+P H L LKIG+PV+L+RN+N G NGTR IV+ + +E +I TGT G++V IPRI+ +P S PF L+RRQ PL + ++TINK+QGQ+L VGLYL VF+HGQ Y+A SRV A LT+ N T E N NIVY+E+ I ++T
Sbjct: 24 PGLPDHYLTLKIGSPVMLIRNMNQKEGLCNGTRLIVTHLGDRVIEAEILTGTRVGKKVLIPRIILSPPYSKWPFKLKRRQFPLRLCYAMTINKSQGQSLKKVGLYLPKPVFSHGQLYVALSRVTSEAGLTIL--NIQTTKEMANTIKNIVYREVFNNIPKTT 183
BLAST of mRNA_P-wetherbeei_contig17111.1.1 vs. uniprot
Match: UPI00087088B8 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Pyrus x bretschneideri TaxID=225117 RepID=UPI00087088B8) HSP 1 Score: 153 bits (386), Expect = 8.110e-42 Identity = 79/154 (51.30%), Postives = 101/154 (65.58%), Query Frame = 2
Query: 230 PGMPPHRLQLKIGTPVILLRNLNASGGQANGTRGIVSAMHRTFVECDITTGTNAGRRVYIPRILFTPADSDLPFTLRRRQLPLDIACSLTINKAQGQTLAAVGLYLHTQVFTHGQAYIAFSRVGDPAALTVALPNRYRTPEGNYFDNIVYKEIL 691
PG+P H+L LK+G PV+LLRNLN S G NGTR +V + VE I TG+N G RVYIPRI+ + + PFTLRRRQ PL I ++TINK+QGQ+L VGL+L VF+H Q Y+A SRV L + + + P G Y NIVYK++L
Sbjct: 81 PGLPHHKLALKVGMPVMLLRNLNQSSGLCNGTRLVVMQLTDRIVEAKIITGSNIGERVYIPRIITESSQNKYPFTLRRRQFPLRICYAMTINKSQGQSLKIVGLFLSQTVFSHRQLYVALSRVTSKKGLKIVIAHDCDMPYG-YTKNIVYKDVL 233
BLAST of mRNA_P-wetherbeei_contig17111.1.1 vs. uniprot
Match: A0A8I6WTB4_HORVV (ATP-dependent DNA helicase n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6WTB4_HORVV) HSP 1 Score: 155 bits (393), Expect = 9.960e-42 Identity = 76/154 (49.35%), Postives = 104/154 (67.53%), Query Frame = 2
Query: 230 PGMPPHRLQLKIGTPVILLRNLNASGGQANGTRGIVSAMHRTFVECDITTGTNAGRRVYIPRILFTPADSDLPFTLRRRQLPLDIACSLTINKAQGQTLAAVGLYLHTQVFTHGQAYIAFSRVGDPAALTVALPNRYRTPEGNYFDNIVYKEIL 691
PG+P H+L LK+G PV+LLRN+N + G NGTR ++ + ++E I TGT+ G +VYIPRI+ +P+DS PF L+RRQ PL + ++TINK+QGQ+L VG+YL QVF HGQ Y+A SRV + L V + + P + NIVYKEI
Sbjct: 216 PGIPDHKLTLKMGLPVMLLRNINQAAGLCNGTRMTITQLGNKYIETQIITGTHVGDKVYIPRIIMSPSDSKWPFVLKRRQYPLSVCFAMTINKSQGQSLNKVGIYLPKQVFCHGQLYVALSRVTNKEGLKVLIDDE-ECPTEDVAKNIVYKEIF 368 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17111.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig17111.1.1 >prot_P-wetherbeei_contig17111.1.1 ID=prot_P-wetherbeei_contig17111.1.1|Name=mRNA_P-wetherbeei_contig17111.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp MPPHRLQLKIGTPVILLRNLNASGGQANGTRGIVSAMHRTFVECDITTGTback to top mRNA from alignment at P-wetherbeei_contig17111:339..1131+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig17111.1.1 ID=mRNA_P-wetherbeei_contig17111.1.1|Name=mRNA_P-wetherbeei_contig17111.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=793bp|location=Sequence derived from alignment at P-wetherbeei_contig17111:339..1131+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig17111:339..1131+ >mRNA_P-wetherbeei_contig17111.1.1 ID=mRNA_P-wetherbeei_contig17111.1.1|Name=mRNA_P-wetherbeei_contig17111.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig17111:339..1131+ (Phaeothamnion wetherbeei SAG_119_79)back to top |