mRNA_P-wetherbeei_contig1711.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1711.1.1
Unique NamemRNA_P-wetherbeei_contig1711.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1711.1.1 vs. uniprot
Match: A0A6H5L2J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J7_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.980e-31
Identity = 105/242 (43.39%), Postives = 135/242 (55.79%), Query Frame = 1
Query:    1 MLWADRREHYRGFWRDDMQEGWGEHVWLADRPPSHV-LDTHQQMCNVYRGEWHRGLRHGRGEFHYANGARYXXXXXXXXXXXXXXXXXEDGRVVEADFAEDKMTASPKAAGEKRDLATLNASVKLRIGDIIQGSSXXXXXXXXXXXXXXXXXXXXXXXTAAMHEVNRV--VLQVNSELRRCYKRYSLGA-NAAKDETVFTMTVAGFLSFAHDCGALAPRTALSEAEVYRMLRRMRRHHALQL 714
            M W +RRE Y             EHVW+ +RP S V +DT +QMCNVYRGEW  G+RHG+G F YA+G+R+ XXXXXXXXXXXXXXXX +GR  E  F +D M       G+  +   L+A+VKL+I DI+   +                            EV R   V  V S+L+  YK Y+     A +D T+FTM++  F+ FA DC ALAP T ++  EVYRM  RMRR H L+L
Sbjct:  166 MNWKERRERYTXXXXXXXXXXXXEHVWIEERPVSAVSMDTQKQMCNVYRGEWLDGMRHGQGTFMYADGSRHTXXXXXXXXXXXXXXXXXNGRTFEGLFDDDVMLGK---VGQDDEHPELSAAVKLKIADILSSGT----------------------------EVARAAAVRDVESDLKLLYKHYAKPEMTAPRDSTMFTMSMEQFVVFARDCRALAPCTRVTVGEVYRMFFRMRRQHTLEL 376          
BLAST of mRNA_P-wetherbeei_contig1711.1.1 vs. uniprot
Match: G0QM41_ICHMG (Radial spoke head protein, putative (Fragment) n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0QM41_ICHMG)

HSP 1 Score: 68.9 bits (167), Expect = 3.560e-9
Identity = 30/69 (43.48%), Postives = 44/69 (63.77%), Query Frame = 1
Query:    1 MLWADRREHYRGFWRDDMQEGWGEHVWLADRPPSHVLDTHQQMCNVYRGEWHRGLRHGRGEFHYANGAR 207
            M W D  E Y+G W+D++Q+G+GEH+WL  +  + VL       N Y G+W +G R G G F+YANG++
Sbjct:   87 MHWIDCNEKYKGEWKDNIQDGYGEHIWLEPKGENKVLR------NRYEGQWQQGKREGLGVFYYANGSK 149          
BLAST of mRNA_P-wetherbeei_contig1711.1.1 vs. uniprot
Match: D7FIY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIY9_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 1.240e-8
Identity = 54/103 (52.43%), Postives = 64/103 (62.14%), Query Frame = 1
Query:    1 MLWADRREHYRGFWRDDMQEGWGEHVWLADRPPSHV-LDTHQQMCNVYRGEWHRGLRHGRGEFHYANGARYXXXXXXXXXXXXXXXXXEDGRVVEADFAEDKM 306
            M W +RRE Y                   +RP S V +DT +QMCNVYRGEW  G+RHG+G F YA+G+R+ XXXXXXXXXXXXXXXX  GR  E  F +D M
Sbjct:  166 MNWVERRERYTXXXXXXXXXXXXXXXXXXERPVSAVSMDTQKQMCNVYRGEWLDGMRHGQGTFMYADGSRHTXXXXXXXXXXXXXXXXXXGRTFEGLFDDDAM 268          
BLAST of mRNA_P-wetherbeei_contig1711.1.1 vs. uniprot
Match: G4ZK71_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZK71_PHYSP)

HSP 1 Score: 67.0 bits (162), Expect = 1.560e-8
Identity = 34/62 (54.84%), Postives = 38/62 (61.29%), Query Frame = 1
Query:   22 EHYRGFWRDDMQEGWGEHVWLADRPPSHVLDTHQQMCNVYRGEWHRGLRHGRGEFHYANGAR 207
            E Y G W +D QEG+G HVWL + P S          N Y GE+H GLRHGRG F YANGAR
Sbjct:  246 ERYDGEWLNDYQEGFGRHVWLVN-PLSVSATGSTSKNNWYEGEFHEGLRHGRGVFFYANGAR 306          
BLAST of mRNA_P-wetherbeei_contig1711.1.1 vs. uniprot
Match: A0A225WDW5_9STRA (Radial spoke head protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WDW5_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.560e-8
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   22 EHYRGFWRDDMQEGWGEHVWLADRPPSHVLDTHQQMC--------NVYRGEWHRGLRHGRGEFHYANGAR 207
            E Y G W +D Q+G+G HVWLA   P + L T  +          N Y G++H+GLRHGRG F+YANGAR
Sbjct:  254 ERYDGEWENDYQQGFGRHVWLAT--PLNGLTTENESSASSSPHDKNWYEGDFHQGLRHGRGVFYYANGAR 321          
BLAST of mRNA_P-wetherbeei_contig1711.1.1 vs. uniprot
Match: D0NR05_PHYIT (Radial spoke head 10 family protein n=3 Tax=Phytophthora infestans TaxID=4787 RepID=D0NR05_PHYIT)

HSP 1 Score: 65.5 bits (158), Expect = 4.870e-8
Identity = 75/192 (39.06%), Postives = 89/192 (46.35%), Query Frame = 1
Query:   22 EHYRGFWRDDMQEGWGEHVWLADRPPSHVLDTHQQMCNVYRGEWHRGLRHGRGEFHYANGARYXXXXXXXXXXXXXXXXXEDGRVVEADFAEDKMTASPKAAGEKRDLATLNASVKLRIGDIIQGSSXXXXXXXXXXXXXXXXXXXXXXXTAAMHEVNRVVLQVNSELRRCYK------RYSL--GANAAKD 573
            E Y G W +D QEG+G HVWL + P S   +      N Y GE+H GLRHGRG F YANGAR XXXXXXXXXXXXXXXXX   RV    F +D+      A      L+T    V +        S                          A   V    L++N+ELR  Y+      R SL  G+N A D
Sbjct:  237 ERYDGEWENDCQEGFGRHVWLVN-PLSGSSNK-----NWYEGEFHEGLRHGRGVFFYANGARXXXXXXXXXXXXXXXXXXXXXRVFVGLFRQDRSVEGSYATAATAGLST---PVPVESSTATSPSQPPNSAGIMLYINDLLPITDVPRREKARKAVEHAALRINTELRALYRECIKQSRRSLAPGSNDADD 419          
BLAST of mRNA_P-wetherbeei_contig1711.1.1 vs. uniprot
Match: H3H5Y0_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H5Y0_PHYRM)

HSP 1 Score: 62.4 bits (150), Expect = 4.680e-7
Identity = 34/73 (46.58%), Postives = 39/73 (53.42%), Query Frame = 1
Query:   22 EHYRGFWRDDMQEGWGEHVWLAD-----------RPPSHVLDTHQQMCNVYRGEWHRGLRHGRGEFHYANGAR 207
            E Y G W +D Q G+G HVWL             R  S +   H +  N Y GE+H GLRHGRG F YANGAR
Sbjct:  118 ERYDGEWVNDCQHGFGRHVWLVSPLSSLSTVSPTRMRSSISSPHDK--NWYEGEFHEGLRHGRGVFFYANGAR 188          
BLAST of mRNA_P-wetherbeei_contig1711.1.1 vs. uniprot
Match: A0A6A3INH5_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3INH5_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 6.670e-7
Identity = 34/73 (46.58%), Postives = 43/73 (58.90%), Query Frame = 1
Query:   22 EHYRGFWRDDMQEGWGEHVWLAD-----------RPPSHVLDTHQQMCNVYRGEWHRGLRHGRGEFHYANGAR 207
            E Y G W +D Q+G+G HVWL +            P S  +++H +  N Y GE+H GLRHGRG F YANGAR
Sbjct:  260 ERYDGEWMNDCQKGFGRHVWLVNPLSAGSTSRNGAPVS--INSHDK--NWYEGEFHEGLRHGRGVFFYANGAR 328          
BLAST of mRNA_P-wetherbeei_contig1711.1.1 vs. uniprot
Match: A0A329SFI2_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SFI2_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 6.700e-7
Identity = 32/71 (45.07%), Postives = 39/71 (54.93%), Query Frame = 1
Query:   22 EHYRGFWRDDMQEGWGEHVWLADRPPSHVLDTHQQMCNV---------YRGEWHRGLRHGRGEFHYANGAR 207
            E Y G W +D Q+G+G HVWL     +    T +   +V         Y GE+H GLRHGRG F YANGAR
Sbjct:  269 ERYDGEWENDCQQGFGRHVWLISPLNTSAGSTSKNGFSVSSNPHDKNWYEGEFHEGLRHGRGVFFYANGAR 339          
BLAST of mRNA_P-wetherbeei_contig1711.1.1 vs. uniprot
Match: W2QL63_PHYPN (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2QL63_PHYPN)

HSP 1 Score: 61.6 bits (148), Expect = 8.870e-7
Identity = 33/69 (47.83%), Postives = 39/69 (56.52%), Query Frame = 1
Query:   22 EHYRGFWRDDMQEGWGEHVWLAD-------RPPSHVLDTHQQMCNVYRGEWHRGLRHGRGEFHYANGAR 207
            E Y G W +D Q+G+G HVWL            S   + H +  N Y GE+H GLRHGRG F YANGAR
Sbjct:  266 ERYDGEWENDCQQGFGRHVWLVSPLNTSSKNGLSASSNPHDK--NWYEGEFHEGLRHGRGVFFYANGAR 332          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1711.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5L2J7_9PHAE1.980e-3143.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
G0QM41_ICHMG3.560e-943.48Radial spoke head protein, putative (Fragment) n=1... [more]
D7FIY9_ECTSI1.240e-852.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
G4ZK71_PHYSP1.560e-854.84Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A225WDW5_9STRA1.560e-848.57Radial spoke head protein n=1 Tax=Phytophthora meg... [more]
D0NR05_PHYIT4.870e-839.06Radial spoke head 10 family protein n=3 Tax=Phytop... [more]
H3H5Y0_PHYRM4.680e-746.58Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]
A0A6A3INH5_9STRA6.670e-746.58Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A329SFI2_9STRA6.700e-745.07Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
W2QL63_PHYPN8.870e-747.83Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1711contigP-wetherbeei_contig1711:1..1155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FIY9
Preferred nameRSPH10B
PFAMsMORN
Model size990
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.99e-20
EggNOG OGsCOG4642@1|root,KOG0231@2759|Eukaryota
DescriptionMORN repeat-containing protein
Cds size990
COG categoryDZ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186108.1615267-CDS-P-wetherbeei_contig1711:0..3161683186108.1615267-CDS-P-wetherbeei_contig1711:0..316Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1711 1..316 +
1683186108.1772017-CDS-P-wetherbeei_contig1711:403..8861683186108.1772017-CDS-P-wetherbeei_contig1711:403..886Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1711 404..886 +
1683186108.1857808-CDS-P-wetherbeei_contig1711:964..11551683186108.1857808-CDS-P-wetherbeei_contig1711:964..1155Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1711 965..1155 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1711.1.1prot_P-wetherbeei_contig1711.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1711 1..1155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1711.1.1

>prot_P-wetherbeei_contig1711.1.1 ID=prot_P-wetherbeei_contig1711.1.1|Name=mRNA_P-wetherbeei_contig1711.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=330bp
MLWADRREHYRGFWRDDMQEGWGEHVWLADRPPSHVLDTHQQMCNVYRGE
WHRGLRHGRGEFHYANGARYAGEWRDNCKHGRALFFHEDGRVVEADFAED
KMTASPKAAGEKRDLATLNASVKLRIGDIIQGSSSSSSGGGVGSSTAAAA
AAATAAATAAMHEVNRVVLQVNSELRRCYKRYSLGANAAKDETVFTMTVA
GFLSFAHDCGALAPRTALSEAEVYRMLRRMRRHHALQLAAEFPNSAAALL
RHGGASSGGGGNGGGGSRRRSSGGGRSNTGGGAYDVAATEAAAAAGLDFF
VDVGALFDPERPLFFRDFVEAVVRLAHASS
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mRNA from alignment at P-wetherbeei_contig1711:1..1155+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1711.1.1 ID=mRNA_P-wetherbeei_contig1711.1.1|Name=mRNA_P-wetherbeei_contig1711.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1155bp|location=Sequence derived from alignment at P-wetherbeei_contig1711:1..1155+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCTGGGCCGACCGCAGAGAGCACTACCGCGGCTTCTGGCGCGACGA CATGCAGGAAGGGTGGGGGGAGCACGTCTGGCTGGCGGATCGGCCGCCGT CGCATGTTCTCGACACCCACCAGCAGATGTGTAACGTCTACCGCGGCGAG TGGCACCGCGGCCTTCGCCACGGGCGTGGCGAGTTCCACTACGCGAATGG CGCCCGCTACGCCGGCGAATGGCGCGACAACTGCAAGCACGGGCGCGCAC TGTTCTTCCATGAGGACGGCCGCGTCGTCGAGGCGGATTTTGCTGAGGAC AAGATGACTGCCAGCCGTGGTGAAACCGGTGGCGGTGGCGGCAGCGGTGA TGCTGTGGTGACAGCCGGGGCGGTGGTGGGAGTCGCAGGAACGGCAGGCG GAGCCAAGGCGGCCGGCGAAAAGCGGGACCTCGCCACCCTGAACGCGTCC GTTAAGCTGCGGATCGGGGACATCATTCAGGGCAGTAGCAGCAGCAGCAG CGGCGGCGGCGTTGGCAGTTCCACTGCCGCCGCCGCCGCCGCCGCCACAG CCGCCGCCACCGCCGCGATGCACGAAGTGAACCGGGTGGTGCTGCAGGTC AATTCGGAGCTGCGTCGCTGCTACAAGCGCTATTCACTCGGCGCCAACGC CGCCAAGGACGAAACCGTCTTCACCATGACCGTCGCGGGCTTCCTGAGCT TCGCCCACGACTGCGGCGCGCTCGCGCCGCGGACGGCGTTGTCGGAGGCG GAAGTTTATCGGATGCTTCGGCGGATGCGGCGTCACCATGCGCTACAGCT GGCCGCAGAGTTTCCGAACTCGGCGGCGGCACTGCTGCGACACGGCGGTG CTTCTAGCGGCGGCGGCGGCAACGGCGGCGGCGGTAGTAGCGGCAGTGGA GCGGCCATCGGAGGCATGGATGAACACGTGTGCTGTGGCGGCGACGATGG GTTGACAAGTGGAGGCAGAAGACGAAGCAGCGGTGGCGGCAGAAGCAACA CCGGCGGAGGCGCGTACGATGTTGCGGCAACGGAGGCGGCAGCGGCGGCA GGTCTCGATTTCTTTGTGGATGTTGGCGCGCTCTTTGACCCCGAGCGGCC GCTCTTTTTCCGTGACTTCGTCGAAGCCGTCGTGCGCCTCGCCCACGCCA GCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1711:1..1155+

>mRNA_P-wetherbeei_contig1711.1.1 ID=mRNA_P-wetherbeei_contig1711.1.1|Name=mRNA_P-wetherbeei_contig1711.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=990bp|location=Sequence derived from alignment at P-wetherbeei_contig1711:1..1155+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCTGGGCCGACCGCAGAGAGCACTACCGCGGCTTCTGGCGCGACGA
CATGCAGGAAGGGTGGGGGGAGCACGTCTGGCTGGCGGATCGGCCGCCGT
CGCATGTTCTCGACACCCACCAGCAGATGTGTAACGTCTACCGCGGCGAG
TGGCACCGCGGCCTTCGCCACGGGCGTGGCGAGTTCCACTACGCGAATGG
CGCCCGCTACGCCGGCGAATGGCGCGACAACTGCAAGCACGGGCGCGCAC
TGTTCTTCCATGAGGACGGCCGCGTCGTCGAGGCGGATTTTGCTGAGGAC
AAGATGACTGCCAGCCCCAAGGCGGCCGGCGAAAAGCGGGACCTCGCCAC
CCTGAACGCGTCCGTTAAGCTGCGGATCGGGGACATCATTCAGGGCAGTA
GCAGCAGCAGCAGCGGCGGCGGCGTTGGCAGTTCCACTGCCGCCGCCGCC
GCCGCCGCCACAGCCGCCGCCACCGCCGCGATGCACGAAGTGAACCGGGT
GGTGCTGCAGGTCAATTCGGAGCTGCGTCGCTGCTACAAGCGCTATTCAC
TCGGCGCCAACGCCGCCAAGGACGAAACCGTCTTCACCATGACCGTCGCG
GGCTTCCTGAGCTTCGCCCACGACTGCGGCGCGCTCGCGCCGCGGACGGC
GTTGTCGGAGGCGGAAGTTTATCGGATGCTTCGGCGGATGCGGCGTCACC
ATGCGCTACAGCTGGCCGCAGAGTTTCCGAACTCGGCGGCGGCACTGCTG
CGACACGGCGGTGCTTCTAGCGGCGGCGGCGGCAACGGCGGCGGCGGTAG
CAGAAGACGAAGCAGCGGTGGCGGCAGAAGCAACACCGGCGGAGGCGCGT
ACGATGTTGCGGCAACGGAGGCGGCAGCGGCGGCAGGTCTCGATTTCTTT
GTGGATGTTGGCGCGCTCTTTGACCCCGAGCGGCCGCTCTTTTTCCGTGA
CTTCGTCGAAGCCGTCGTGCGCCTCGCCCACGCCAGCAGC
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