mRNA_P-wetherbeei_contig17105.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17105.1.1
Unique NamemRNA_P-wetherbeei_contig17105.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17105.1.1 vs. uniprot
Match: A0A833XDW1_JUGRE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Juglans regia TaxID=51240 RepID=A0A833XDW1_JUGRE)

HSP 1 Score: 127 bits (320), Expect = 7.720e-33
Identity = 64/124 (51.61%), Postives = 83/124 (66.94%), Query Frame = 1
Query:    1 PGAHTIGSKWVYKTKTLPNNTIERFKARLVARGFSHIPGLDYDESMTHSPVVRHTTLRAVLAHAARANWAVHQMDVKTAYLKAPLDEIVYMSPPTG*ARPTVNGIRQVKLNKSIYGLKQSGNNW 372
            PG   IG KWV+KTK   + +IER+KARLVA+G++ + GLDY E  T +PV + TT+R +LA AA+ NW +HQ+DV  A+L   LDE VYM PP G    T    R  +L KS+YGLKQ+  NW
Sbjct:   21 PGKKLIGCKWVFKTKLKADGSIERYKARLVAKGYTQVEGLDYHE--TFAPVAKMTTVRCLLAIAAKKNWIIHQLDVNNAFLHGDLDEEVYMIPPPGYC--TQGETRVCRLRKSLYGLKQASRNW 140          
BLAST of mRNA_P-wetherbeei_contig17105.1.1 vs. uniprot
Match: A0A6P5TY53_PRUAV (uncharacterized protein LOC110771896 n=1 Tax=Prunus avium TaxID=42229 RepID=A0A6P5TY53_PRUAV)

HSP 1 Score: 125 bits (315), Expect = 3.200e-32
Identity = 63/124 (50.81%), Postives = 81/124 (65.32%), Query Frame = 1
Query:    1 PGAHTIGSKWVYKTKTLPNNTIERFKARLVARGFSHIPGLDYDESMTHSPVVRHTTLRAVLAHAARANWAVHQMDVKTAYLKAPLDEIVYMSPPTG*ARPTVNGIRQVKLNKSIYGLKQSGNNW 372
            P  + +GSKW+YK K  P+ ++ R+KARLV  GFS   GLDY+E  T SPVVRHTT+R VLAHA + +W +HQ+DVK A+L   L E VYM  P G     ++     KL KS+YGLKQ+   W
Sbjct:   21 PNRNIVGSKWIYKVKKNPDGSVSRYKARLVVEGFSEEQGLDYNE--TFSPVVRHTTVRLVLAHATKNHWELHQLDVKNAFLHGDLQEEVYMKQPQG-FEDAIHPSHICKLLKSLYGLKQAPRAW 141          
BLAST of mRNA_P-wetherbeei_contig17105.1.1 vs. uniprot
Match: A0A7D9JQ57_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JQ57_PARCT)

HSP 1 Score: 120 bits (301), Expect = 1.490e-31
Identity = 64/124 (51.61%), Postives = 82/124 (66.13%), Query Frame = 1
Query:    4 GAHTIGSKWVYKTKTLPNNTIERFKARLVARGFSHIPGLDYDESMTHSPVVRHTTLRAVLAHAARANWAVHQMDVKTAYLKAPLDEIVYMSPPTG*ARPTVNGIRQV-KLNKSIYGLKQSGNNW 372
            G   +G +WVY  KT P+   E +KAR VA+G+S IPG+DY E  T SP  R +++R +L  A + +  VHQMDVKTAYL AP+D  +++  P G  R   NG R V KLNKS+YGLKQSG NW
Sbjct:    7 GREVVGREWVYTVKTGPDKA-ETYKARYVAKGYSQIPGIDYHE--TFSPTARMSSIRILLQQAIQNDMLVHQMDVKTAYLNAPIDCEIFIEQPEGYERVGQNGERLVCKLNKSLYGLKQSGRNW 127          
BLAST of mRNA_P-wetherbeei_contig17105.1.1 vs. uniprot
Match: UPI000870AF23 (uncharacterized protein LOC108867573 n=1 Tax=Pyrus x bretschneideri TaxID=225117 RepID=UPI000870AF23)

HSP 1 Score: 117 bits (294), Expect = 6.970e-31
Identity = 62/123 (50.41%), Postives = 80/123 (65.04%), Query Frame = 1
Query:    1 PGAHTIGSKWVYKTKTLPNNTIERFKARLVARGFSHIPGLDYDESMTHSPVVRHTTLRAVLAHAARANWAVHQMDVKTAYLKAPLDEIVYMSPPTG*ARPTVNGIRQVKLNKSIYGLKQSGNN 369
            PG   IG KWVYK K   N TIER+K+RLVA+G++   G+DY E  T SP+ + TTLR +L  A+   W +HQ+DV+ A+L   L E+VYM+PP G  R   N I    LNKS+YGLKQ+  N
Sbjct:   74 PGHKLIGCKWVYKIKYKSNGTIERYKSRLVAKGYTQNEGVDYQE--TFSPIAKLTTLRCLLTVASARYWYIHQLDVQNAFLHGDLHEVVYMTPPPGLRRQGENII--CWLNKSLYGLKQASRN 192          
BLAST of mRNA_P-wetherbeei_contig17105.1.1 vs. uniprot
Match: A0A0A9WI29_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9WI29_LYGHE)

HSP 1 Score: 120 bits (300), Expect = 6.290e-30
Identity = 61/126 (48.41%), Postives = 82/126 (65.08%), Query Frame = 1
Query:    1 PGAHTIGSKWVYKTKTLPNNTIERFKARLVARGFSHIPGLDYDESMTHSPVVRHTTLRAVLAHAARANWAVHQMDVKTAYLKAPLDEIVYMSPPTG*ARPTVNGI--RQVKLNKSIYGLKQSGNNW 372
            PG   IGSKWV+K K + + T+ER+KARLVA+GF+  PG+DY+E  T+SPV+    +R +   A   NW +HQMDVKTAYL   L E +YM  P G     + G   +  +L +S+YGLKQSG +W
Sbjct:   65 PGKTAIGSKWVFKIKYMADGTVERYKARLVAQGFTQKPGVDYEE--TYSPVISLPAIRLLFKLAVNNNWIIHQMDVKTAYLNGELKEEIYMKCPDG-----ITGAEGKVCRLLRSLYGLKQSGRSW 183          
BLAST of mRNA_P-wetherbeei_contig17105.1.1 vs. uniprot
Match: A0A151UAG0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151UAG0_CAJCA)

HSP 1 Score: 119 bits (297), Expect = 6.810e-30
Identity = 61/119 (51.26%), Postives = 80/119 (67.23%), Query Frame = 1
Query:   16 IGSKWVYKTKTLPNNTIERFKARLVARGFSHIPGLDYDESMTHSPVVRHTTLRAVLAHAARANWAVHQMDVKTAYLKAPLDEIVYMSPPTG*ARPTVNGIRQVKLNKSIYGLKQSGNNW 372
            +GSKWV++TK   ++TIER KARLVA+GF+ IPG DY  S+T SPVV+ TT+R +L+ A    W +HQ+DVK A+L   L EIVYM  P G   P        +LNK++YGLKQ+   W
Sbjct:   43 VGSKWVFRTKHKSDSTIERLKARLVAQGFTQIPGFDY--SLTFSPVVKATTIRLILSLAVLNGWPLHQLDVKNAFLHGHLTEIVYMEQPPGFVDPRFP-THVCRLNKALYGLKQAPRAW 158          
BLAST of mRNA_P-wetherbeei_contig17105.1.1 vs. uniprot
Match: UPI0018F81626 (uncharacterized protein LOC120001529 isoform X1 n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=UPI0018F81626)

HSP 1 Score: 122 bits (306), Expect = 7.430e-30
Identity = 63/123 (51.22%), Postives = 81/123 (65.85%), Query Frame = 1
Query:    4 GAHTIGSKWVYKTKTLPNNTIERFKARLVARGFSHIPGLDYDESMTHSPVVRHTTLRAVLAHAARANWAVHQMDVKTAYLKAPLDEIVYMSPPTG*ARPTVNGIRQVKLNKSIYGLKQSGNNW 372
            G   IG KW+Y+ K  P+ +IER+KARLVARGFS + G+DYDE  T +PV + TT+R +LA AA + W + QMDVK A+L   L EIVYM PP G   P  +  R   L ++IYGLKQ+   W
Sbjct:  376 GVRPIGCKWIYRVKRRPDGSIERYKARLVARGFSQVHGIDYDE--TFAPVAQMTTIRTLLAVAAVSRWPLLQMDVKNAFLNGDLSEIVYMQPPPGLRTPPQHVCR---LRRAIYGLKQAPRAW 493          
BLAST of mRNA_P-wetherbeei_contig17105.1.1 vs. uniprot
Match: UPI000870B18F (uncharacterized protein LOC103957791 n=1 Tax=Pyrus x bretschneideri TaxID=225117 RepID=UPI000870B18F)

HSP 1 Score: 122 bits (306), Expect = 7.510e-30
Identity = 61/124 (49.19%), Postives = 85/124 (68.55%), Query Frame = 1
Query:    1 PGAHTIGSKWVYKTKTLPNNTIERFKARLVARGFSHIPGLDYDESMTHSPVVRHTTLRAVLAHAARANWAVHQMDVKTAYLKAPLDEIVYMSPPTG*ARPTVNGIRQVKLNKSIYGLKQSGNNW 372
            PG   IGSKWVYK K   + +IER+K RLVA+G++ I GLDY E  T +P+ + TT+R +L  AA+ +W +HQ+DV+ A+L   LDE V+MSPP G  R   N +   +L+KS+YGLKQ+ + W
Sbjct:  473 PGKRVIGSKWVYKIKHRSDGSIERYKVRLVAKGYTQIEGLDYSE--TFAPMAKLTTVRCLLVVAAQRHWPLHQLDVQNAFLHGDLDEEVFMSPPPGLRRQGENLV--CRLHKSLYGLKQASSQW 592          
BLAST of mRNA_P-wetherbeei_contig17105.1.1 vs. uniprot
Match: A0A6S7KHG6_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7KHG6_PARCT)

HSP 1 Score: 119 bits (297), Expect = 1.360e-29
Identity = 59/125 (47.20%), Postives = 83/125 (66.40%), Query Frame = 1
Query:    1 PGAHTIGSKWVYKTKTLPNNTIERFKARLVARGFSHIPGLDYDESMTHSPVVRHTTLRAVLAHAARANWAVHQMDVKTAYLKAPLDEIVYMSPPTG*ARPTVNGIRQV-KLNKSIYGLKQSGNNW 372
            P    +G KWVY  K+ PN+  E +KAR +A+G+S +PG+DY E  T +P  R +++R ++ HA + +  VHQMDVK AYL AP+D  +++  P G  +   NG + V KLNKS+YGLKQSG NW
Sbjct:  237 PNREIVGGKWVYTIKSGPNDE-ETYKARYIAKGYSQVPGVDYHE--TFAPTARMSSIRVLMQHAVQNDMIVHQMDVKAAYLNAPIDCDIFVEQPKGYEKEGGNGKKLVCKLNKSLYGLKQSGRNW 358          
BLAST of mRNA_P-wetherbeei_contig17105.1.1 vs. uniprot
Match: A0A7D9D6Q5_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D6Q5_PARCT)

HSP 1 Score: 121 bits (304), Expect = 1.400e-29
Identity = 62/123 (50.41%), Postives = 82/123 (66.67%), Query Frame = 1
Query:    4 GAHTIGSKWVYKTKTLPNNTIERFKARLVARGFSHIPGLDYDESMTHSPVVRHTTLRAVLAHAARANWAVHQMDVKTAYLKAPLDEIVYMSPPTG*ARPTVNGIRQVKLNKSIYGLKQSGNNW 372
            G + +GSKWV+K KT  N  ++R+KARLVA+G++   G+DY E    SPVVR+TT+R++LA +   NW VHQMDVKTA+L+  L+E +YM  P G     +      KL KSIYGLKQS   W
Sbjct:  850 GKNVVGSKWVFKVKTDENGCVQRYKARLVAQGYTQAEGVDYSE--VFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNLEEEIYMRQPDGYVNKELPN-HVCKLKKSIYGLKQSARCW 969          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17105.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A833XDW1_JUGRE7.720e-3351.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6P5TY53_PRUAV3.200e-3250.81uncharacterized protein LOC110771896 n=1 Tax=Prunu... [more]
A0A7D9JQ57_PARCT1.490e-3151.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI000870AF236.970e-3150.41uncharacterized protein LOC108867573 n=1 Tax=Pyrus... [more]
A0A0A9WI29_LYGHE6.290e-3048.41Retrovirus-related Pol polyprotein from transposon... [more]
A0A151UAG0_CAJCA6.810e-3051.26Retrovirus-related Pol polyprotein from transposon... [more]
UPI0018F816267.430e-3051.22uncharacterized protein LOC120001529 isoform X1 n=... [more]
UPI000870B18F7.510e-3049.19uncharacterized protein LOC103957791 n=1 Tax=Pyrus... [more]
A0A6S7KHG6_PARCT1.360e-2947.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9D6Q5_PARCT1.400e-2950.41Retrovirus-related Pol poly from transposon TNT 1-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17105contigP-wetherbeei_contig17105:488..859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog71139.XP_010065142.1
PFAMsRVT_2,Retrotran_gag_2,Retrotran_gag_3,gag_pre-integrs
Model size372
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue3.5e-09
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37YXJ@33090|Viridiplantae,3GHMT@35493|Streptophyta
DescriptionMitochondrial protein
Cds size156
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186108.0804164-UTR-P-wetherbeei_contig17105:487..5681683186108.0804164-UTR-P-wetherbeei_contig17105:487..568Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17105 488..568 -
1683186108.1029418-UTR-P-wetherbeei_contig17105:724..8591683186108.1029418-UTR-P-wetherbeei_contig17105:724..859Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17105 725..859 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186108.0934649-CDS-P-wetherbeei_contig17105:568..7241683186108.0934649-CDS-P-wetherbeei_contig17105:568..724Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17105 569..724 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17105.1.1prot_P-wetherbeei_contig17105.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17105 569..724 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17105.1.1

>prot_P-wetherbeei_contig17105.1.1 ID=prot_P-wetherbeei_contig17105.1.1|Name=mRNA_P-wetherbeei_contig17105.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=52bp
MTHSPVVRHTTLRAVLAHAARANWAVHQMDVKTAYLKAPLDEIVYMSPPT
G*
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mRNA from alignment at P-wetherbeei_contig17105:488..859-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17105.1.1 ID=mRNA_P-wetherbeei_contig17105.1.1|Name=mRNA_P-wetherbeei_contig17105.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig17105:488..859- (Phaeothamnion wetherbeei SAG_119_79)
CCTGGAGCACACACCATTGGTAGCAAATGGGTATACAAAACCAAAACGTT GCCAAACAACACCATTGAGCGCTTCAAAGCCCGTTTAGTTGCCCGTGGCT TCTCCCACATACCCGGTCTAGACTATGATGAATCAATGACCCATTCCCCG GTTGTACGTCACACCACTCTCCGAGCTGTTTTAGCTCATGCCGCCCGAGC CAACTGGGCAGTCCACCAAATGGACGTTAAAACCGCTTATTTAAAAGCTC CCCTAGACGAAATTGTCTATATGTCGCCACCGACAGGCTGAGCCCGTCCA ACTGTCAACGGCATCCGCCAAGTAAAGTTAAACAAAAGCATATATGGCCT CAAACAAAGTGGCAACAACTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17105:488..859-

>mRNA_P-wetherbeei_contig17105.1.1 ID=mRNA_P-wetherbeei_contig17105.1.1|Name=mRNA_P-wetherbeei_contig17105.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=156bp|location=Sequence derived from alignment at P-wetherbeei_contig17105:488..859- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCCATTCCCCGGTTGTACGTCACACCACTCTCCGAGCTGTTTTAGC
TCATGCCGCCCGAGCCAACTGGGCAGTCCACCAAATGGACGTTAAAACCG
CTTATTTAAAAGCTCCCCTAGACGAAATTGTCTATATGTCGCCACCGACA
GGCTGA
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