mRNA_P-wetherbeei_contig17100.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17100.1.1
Unique NamemRNA_P-wetherbeei_contig17100.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17100.1.1 vs. uniprot
Match: A0A7S1TXV3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TXV3_9STRA)

HSP 1 Score: 178 bits (451), Expect = 4.070e-53
Identity = 87/147 (59.18%), Postives = 101/147 (68.71%), Query Frame = 1
Query:   67 IAGHTFLFVGGPHRGGTTLLWKCLRAHPSVGGFPDRVGADYSEGIFLQSVYPTFGIGGEAAHG---AHGKAAAGRGMSTQGLGRYAFDPESHLTETSELATDEARTRLFNEWGFFW---DLKKPFLLEKSPPNMMISRFLQRLFTAP 489
            +  HT LFVGGPHRGGTT+LWK LR HP + GF D+VGAD SEGIF+Q+VYP FGIG E   G     G   A   + T+GLGRY F+P++H+TE S L   E R  LFN+W +FW   D  K   LEKSPPNMMISRFLQ LFT P
Sbjct:   78 VGNHTLLFVGGPHRGGTTILWKKLREHPEIAGFGDKVGADMSEGIFMQTVYPQFGIGAEINAGRMQGRGTIKANGDLDTRGLGRYMFNPDAHITEDSNLVNAENRMDLFNQWSYFWPVHDASKRVFLEKSPPNMMISRFLQALFTVP 224          
BLAST of mRNA_P-wetherbeei_contig17100.1.1 vs. uniprot
Match: A0A7S1XMW6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XMW6_9STRA)

HSP 1 Score: 178 bits (451), Expect = 7.910e-52
Identity = 87/147 (59.18%), Postives = 101/147 (68.71%), Query Frame = 1
Query:   67 IAGHTFLFVGGPHRGGTTLLWKCLRAHPSVGGFPDRVGADYSEGIFLQSVYPTFGIGGEAAHG---AHGKAAAGRGMSTQGLGRYAFDPESHLTETSELATDEARTRLFNEWGFFW---DLKKPFLLEKSPPNMMISRFLQRLFTAP 489
            +  HT LFVGGPHRGGTT+LWK LR HP + GF D+VGAD SEGIF+Q+VYP FGIG E   G     G   A   + T+GLGRY F+P++H+TE S L   E R  LFN+W +FW   D  K   LEKSPPNMMISRFLQ LFT P
Sbjct:   78 VGNHTLLFVGGPHRGGTTILWKKLREHPEIAGFGDKVGADMSEGIFMQTVYPQFGIGAEINAGRMQGRGTIKANGDLDTRGLGRYMFNPDAHITEDSNLVNAENRMDLFNQWSYFWPVHDASKRVFLEKSPPNMMISRFLQALFTVP 224          
BLAST of mRNA_P-wetherbeei_contig17100.1.1 vs. uniprot
Match: A0A7S3YF46_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YF46_HETAK)

HSP 1 Score: 175 bits (443), Expect = 1.240e-50
Identity = 86/158 (54.43%), Postives = 115/158 (72.78%), Query Frame = 1
Query:   22 SMKVLDLDDDAVLSEIAGHTFLFVGGPHRGGTTLLWKCLRAHPSVGGFPDRVGADYSEGIFLQSVYPTFGIGGEAAHGAHGKAAAGRGMST-QGLGRYAFDPESHLTETSELATDEARTRLFNEWGFFWDLKK--PFLLEKSPPNMMISRFLQRLFTA 486
            +MK      + V + IA  +FLFVGGPHRGGTT+LW+ LR HP++ GF D+ GAD SEGIF+QSV+P FGIG E +  A   A   RG+   +GLG+YAF PE+H+TE   LAT+  R +LFN++ +FWDL++  P LLEKSPPNM+ SRF+Q++F+A
Sbjct:   78 AMKEASYSQEQVTNLIASKSFLFVGGPHRGGTTILWQALREHPNITGFSDKTGADASEGIFIQSVFPQFGIGAEIS-AAKMAAQHNRGLGVMRGLGKYAFAPEAHMTEEHHLATERHRRKLFNQFAYFWDLRRDAPVLLEKSPPNMVYSRFIQKMFSA 234          
BLAST of mRNA_P-wetherbeei_contig17100.1.1 vs. uniprot
Match: A0A0M0JEP1_9EUKA (Nodulation protein noee n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JEP1_9EUKA)

HSP 1 Score: 160 bits (404), Expect = 3.550e-44
Identity = 76/147 (51.70%), Postives = 102/147 (69.39%), Query Frame = 1
Query:   49 DAVLSEIAGHTFLFVGGPHRGGTTLLWKCLRAHPSVGGFPDRVGADYSEGIFLQSVYPTFGIGGEAAHGAHGKAAAGRGMSTQGLGRYAFDPESHLTETSELATDEARTRLFNEWGFFWDLKKPFLLEKSPPNMMISRFLQRLFTAP 489
            DA L+E   H F+ +GGPHRGGTTL+W+ LR+HP+VG FP+RV +D+SEG FLQ+V PTFG+G E   G+ G  A        GLGRYAF P++H+TET  L T     +L ++WG+FW+  +P LLEK+P +M+ SR LQ L + P
Sbjct:   12 DAFLAE---HRFIVIGGPHRGGTTLMWQLLRSHPAVGSFPERVASDFSEGSFLQTVLPTFGVGNELQMGSGGVNA-----KPMGLGRYAFSPDAHMTETHALNTRANSRQLLSQWGYFWNTSRPVLLEKTPTDMLTSRLLQALLSPP 150          
BLAST of mRNA_P-wetherbeei_contig17100.1.1 vs. uniprot
Match: R1E3X3_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E3X3_EMIHU)

HSP 1 Score: 154 bits (388), Expect = 9.490e-42
Identity = 77/163 (47.24%), Postives = 100/163 (61.35%), Query Frame = 1
Query:    1 FLALVPRSMKVLDLDDDAVLSEIAGHTFLFVGGPHRGGTTLLWKCLRAHPSVGGFPDRVGADYSEGIFLQSVYPTFGIGGEAAHGAHGKAAAGRGMSTQGLGRYAFDPESHLTETSELATDEARTRLFNEWGFFWD---LKKPFLLEKSPPNMMISRFLQRLF 480
            ++ L+P S K L L      +    H FLF+ GPHRGGTTLLW+ LR HP VG F +R   D+SEG FLQSV PTFG+G E                 +G+GRY FDP +HLTE S LA+  +R  L ++WG++W    L++P LLEK+P NM+ +R LQ LF
Sbjct:   58 WMMLLPPSAKTLRLSAAEAEAMARRHRFLFIAGPHRGGTTLLWRLLRLHPQVGAFAERTDGDFSEGAFLQSVMPTFGVGREREDCLRAGVRRVGSPPARGVGRYGFDPGAHLTEASPLASLASRDALLSQWGYYWGEAGLERPLLLEKTPTNMLTARLLQSLF 220          
BLAST of mRNA_P-wetherbeei_contig17100.1.1 vs. uniprot
Match: A0A7S3S6U3_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3S6U3_EMIHU)

HSP 1 Score: 153 bits (387), Expect = 4.940e-41
Identity = 77/163 (47.24%), Postives = 100/163 (61.35%), Query Frame = 1
Query:    1 FLALVPRSMKVLDLDDDAVLSEIAGHTFLFVGGPHRGGTTLLWKCLRAHPSVGGFPDRVGADYSEGIFLQSVYPTFGIGGEAAHGAHGKAAAGRGMSTQGLGRYAFDPESHLTETSELATDEARTRLFNEWGFFWD---LKKPFLLEKSPPNMMISRFLQRLF 480
            ++ L+P S K L L      +    H FLF+ GPHRGGTTLLW+ LR HP VG F +R   D+SEG FLQSV PTFG+G E                 +G+GRY FDP +HLTE S LA+  +R  L ++WG++W    L++P LLEK+P NM+ +R LQ LF
Sbjct:   98 WMMLLPPSAKTLRLSAAEAEAMARRHRFLFIAGPHRGGTTLLWRLLRLHPQVGAFAERTDGDFSEGAFLQSVMPTFGVGREREDCLRAGVRRVGSPPARGVGRYGFDPGAHLTEASPLASLVSRDALLSQWGYYWGEAGLERPLLLEKTPTNMLTARLLQSLF 260          
BLAST of mRNA_P-wetherbeei_contig17100.1.1 vs. uniprot
Match: A0A7S0LDN7_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LDN7_9EUKA)

HSP 1 Score: 148 bits (374), Expect = 2.640e-40
Identity = 73/152 (48.03%), Postives = 98/152 (64.47%), Query Frame = 1
Query:   25 MKVLDLDDDAVLSEIAGHTFLFVGGPHRGGTTLLWKCLRAHPSVGGFPDRVGADYSEGIFLQSVYPTFGIGGEAAHGAHGKAAAGRGMSTQGLGRYAFDPESHLTETSELATDEARTRLFNEWGFFWDLKKPFLLEKSPPNMMISRFLQRLF 480
            M  L L  +  +  I  H+ + +GGPHRGGTT+LW+ +  H SV  F   + AD+SEG FLQSV PT+G+G E +     +    RG+ST GLGRYA  P +H TE S L  ++ RT L +EWG +WDL++P LLEK+P NM+ +R LQ LF
Sbjct:    1 MLRLHLSVNDAIKIIRNHSIVLIGGPHRGGTTILWELISLHRSVSAFGSNIPADFSEGSFLQSVLPTYGVGNEESACFRHR----RGVSTAGLGRYALSPYAHQTENSPLNREDVRTLLVSEWGRYWDLERPVLLEKTPTNMVSARLLQALF 148          
BLAST of mRNA_P-wetherbeei_contig17100.1.1 vs. uniprot
Match: A0A7S0CNK2_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CNK2_9EUKA)

HSP 1 Score: 135 bits (341), Expect = 2.240e-35
Identity = 77/160 (48.12%), Postives = 96/160 (60.00%), Query Frame = 1
Query:   13 VPRSMKVLDLDDDAVLSEI-AGHTFLFVGGPHRGGTTLLWKCLRAHPSVGGFPDR--VGADYSEGIFLQSVYPTFGIGGEAAHGAHGKAAAGRGMSTQGLGRYAFDPES--HLTETSELATDEARTRLFNEWGFFWDLKKPFLLEKSPPNMMISRFLQRL 477
            +P S + L    +    EI A  T + VGGPHRGGTTLLW+CLR HP +  F  +    +D SEGIFLQ VYP FGIG E A     +    RG    G+G++A   E   HL E   L T+  + RL N +G+FW++ KP LLEKSPPN +ISRFLQ L
Sbjct:   79 IPESWQYLSHTPEYWQKEILAKKTVVMVGGPHRGGTTLLWECLREHPDIANFGSQHQTASDLSEGIFLQDVYPNFGIGHEIAQSDWRRR---RG----GMGQFALGKEEWVHLLEDHRLVTEYNQARLLNRYGYFWNMSKPVLLEKSPPNAVISRFLQAL 231          
BLAST of mRNA_P-wetherbeei_contig17100.1.1 vs. uniprot
Match: A0A7S2RKY1_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKY1_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.320e-34
Identity = 70/135 (51.85%), Postives = 89/135 (65.93%), Query Frame = 1
Query:   79 TFLFVGGPHRGGTTLLWKCLRAHPSVGGFPD--RVGADYSEGIFLQSVYPTFGIGGEAAHGAHGKAAAGRGMSTQGLGRYAFDPES--HLTETSELATDEARTRLFNEWGFFWDLKKPFLLEKSPPNMMISRFLQ 471
            T + +GGPHRGGTT+LW+CLR H  VG F    + G+D+SEGIFLQ VYP FG+GGE      G   AG+G    G+G+Y F  E   H TE   L ++E++ RL N +G+ W+L K  LLEKSPPNM + RFLQ
Sbjct:   96 TIVMIGGPHRGGTTVLWECLRQHEDVGDFGTTFQSGSDFSEGIFLQDVYPQFGVGGEIQSMMPG-GQAGKG----GMGKYLFAEEELVHWTEEHPLVSEESQARLLNSFGYHWNLSKRVLLEKSPPNMHLGRFLQ 225          
BLAST of mRNA_P-wetherbeei_contig17100.1.1 vs. uniprot
Match: A0A7S2V2M0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2M0_9STRA)

HSP 1 Score: 129 bits (324), Expect = 3.750e-33
Identity = 74/165 (44.85%), Postives = 92/165 (55.76%), Query Frame = 1
Query:   13 VPRSMKVLDLDDDAVLSEIAGHTFLFVGGPHRGGTTLLWKCLRAHPSVGGFPDRV--GADYSEGIFLQSVYPTFGIGGEAAHGAHGKAAAGRGMSTQ--GLGRYAFDPES--HLTETSELATDEARTRLFNEWGFFWDLKKPFLLEKSPPNMMISRFLQRLFTAP 489
            V RS   L+L      S +   T L +GGPHRGGTT++WK +  HP V GF      GAD+SEGI +Q VYP FG+G E         A   G  TQ  G G+YA   E+  HL ET E  T     +L N +G +W+L KP L EKSPP  ++SRFLQ L+  P
Sbjct:   16 VDRSYFDLNLSPSEWRSIMKDKTVLLIGGPHRGGTTIIWKAITQHPLVAGFGSTFESGADHSEGILIQDVYPQFGVGMEKIM------ANMAGFKTQMIGAGKYALGDEAKVHLIETDEKVTPSNMAKLLNRFGSYWNLTKPVLAEKSPPTAVMSRFLQALYNVP 174          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17100.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1TXV3_9STRA4.070e-5359.18Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1XMW6_9STRA7.910e-5259.18Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3YF46_HETAK1.240e-5054.43Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0M0JEP1_9EUKA3.550e-4451.70Nodulation protein noee n=1 Tax=Chrysochromulina t... [more]
R1E3X3_EMIHU9.490e-4247.24Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7S3S6U3_EMIHU4.940e-4147.24Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A7S0LDN7_9EUKA2.640e-4048.03Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S0CNK2_9EUKA2.240e-3548.13Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S2RKY1_9STRA1.320e-3451.85Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S2V2M0_9STRA3.750e-3344.85Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17100contigP-wetherbeei_contig17100:168..656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2903.EOD17741
PFAMsSulfotransfer_3
Model size489
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.29e-40
EggNOG OGs2E2J6@1|root,2S9SH@2759|Eukaryota
Cds size465
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186107.9428167-CDS-P-wetherbeei_contig17100:167..6321683186107.9428167-CDS-P-wetherbeei_contig17100:167..632Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17100 168..632 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186107.965154-UTR-P-wetherbeei_contig17100:632..6561683186107.965154-UTR-P-wetherbeei_contig17100:632..656Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17100 633..656 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17100.1.1prot_P-wetherbeei_contig17100.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17100 168..632 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17100.1.1

>prot_P-wetherbeei_contig17100.1.1 ID=prot_P-wetherbeei_contig17100.1.1|Name=mRNA_P-wetherbeei_contig17100.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=155bp
MKVLDLDDDAVLSEIAGHTFLFVGGPHRGGTTLLWKCLRAHPSVGGFPDR
VGADYSEGIFLQSVYPTFGIGGEAAHGAHGKAAAGRGMSTQGLGRYAFDP
ESHLTETSELATDEARTRLFNEWGFFWDLKKPFLLEKSPPNMMISRFLQR
LFTAP
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mRNA from alignment at P-wetherbeei_contig17100:168..656-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17100.1.1 ID=mRNA_P-wetherbeei_contig17100.1.1|Name=mRNA_P-wetherbeei_contig17100.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig17100:168..656- (Phaeothamnion wetherbeei SAG_119_79)
TTTCTCGCGCTCGTGCCGCGCAGCATGAAAGTTCTTGACCTCGACGATGA CGCTGTGCTCAGCGAGATCGCGGGCCACACCTTTCTCTTCGTCGGCGGCC CCCACCGCGGCGGCACGACCCTCCTGTGGAAGTGCCTCCGCGCCCACCCG AGCGTCGGCGGCTTCCCGGACCGCGTCGGCGCCGACTATTCGGAGGGAAT CTTCCTGCAGTCCGTCTACCCGACCTTCGGCATCGGCGGCGAGGCCGCTC ACGGCGCCCACGGCAAGGCCGCCGCCGGCCGCGGAATGTCGACGCAGGGA CTCGGCCGTTACGCCTTCGACCCGGAGTCCCACCTGACGGAGACGTCCGA GCTCGCGACGGACGAGGCGCGGACCCGCCTCTTCAACGAGTGGGGATTCT TTTGGGACCTGAAAAAGCCGTTTCTGCTGGAGAAGAGCCCGCCCAACATG ATGATCAGCCGCTTCCTGCAGCGCCTCTTCACGGCGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17100:168..656-

>mRNA_P-wetherbeei_contig17100.1.1 ID=mRNA_P-wetherbeei_contig17100.1.1|Name=mRNA_P-wetherbeei_contig17100.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig17100:168..656- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAGTTCTTGACCTCGACGATGACGCTGTGCTCAGCGAGATCGCGGG
CCACACCTTTCTCTTCGTCGGCGGCCCCCACCGCGGCGGCACGACCCTCC
TGTGGAAGTGCCTCCGCGCCCACCCGAGCGTCGGCGGCTTCCCGGACCGC
GTCGGCGCCGACTATTCGGAGGGAATCTTCCTGCAGTCCGTCTACCCGAC
CTTCGGCATCGGCGGCGAGGCCGCTCACGGCGCCCACGGCAAGGCCGCCG
CCGGCCGCGGAATGTCGACGCAGGGACTCGGCCGTTACGCCTTCGACCCG
GAGTCCCACCTGACGGAGACGTCCGAGCTCGCGACGGACGAGGCGCGGAC
CCGCCTCTTCAACGAGTGGGGATTCTTTTGGGACCTGAAAAAGCCGTTTC
TGCTGGAGAAGAGCCCGCCCAACATGATGATCAGCCGCTTCCTGCAGCGC
CTCTTCACGGCGCCG
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