mRNA_P-wetherbeei_contig171.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig171.6.1
Unique NamemRNA_P-wetherbeei_contig171.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig171.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig171contigP-wetherbeei_contig171:11478..12533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1056
Hectar predicted targeting categorymitochondrion
Exons1
Cds size837
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186107.4728682-UTR-P-wetherbeei_contig171:11477..115101683186107.4728682-UTR-P-wetherbeei_contig171:11477..11510Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig171 11478..11510 +
1683186107.4900455-UTR-P-wetherbeei_contig171:12347..125331683186107.4900455-UTR-P-wetherbeei_contig171:12347..12533Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig171 12348..12533 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186107.4817293-CDS-P-wetherbeei_contig171:11510..123471683186107.4817293-CDS-P-wetherbeei_contig171:11510..12347Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig171 11511..12347 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig171.6.1prot_P-wetherbeei_contig171.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig171 11511..12347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig171.6.1

>prot_P-wetherbeei_contig171.6.1 ID=prot_P-wetherbeei_contig171.6.1|Name=mRNA_P-wetherbeei_contig171.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=279bp
MAAARLTARAAAPTAVALNGAVAAGAVPLADASTPASAAPATATSASPAG
ATSADPAVPAPAPATWGIPLNVRVGRTGRWGCSAAYTGIMASERVEIDVS
SLLARADAAAGGAAGDKGAARDIHSGFGASSRFAAAMAAADAAHATAAGA
AAVAQSGSGPVGAGDVYVVVNGGHTGFFVTQYDDAAWRAAVAAVAGGHCS
DVEAVGFVFDHTLSIFALLLSKSATAQARERGRLAHSSFYLFSLPFVFSS
LPRAGTHTRAMGRSNLLFLFEPASFMRH*
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mRNA from alignment at P-wetherbeei_contig171:11478..12533+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig171.6.1 ID=mRNA_P-wetherbeei_contig171.6.1|Name=mRNA_P-wetherbeei_contig171.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1056bp|location=Sequence derived from alignment at P-wetherbeei_contig171:11478..12533+ (Phaeothamnion wetherbeei SAG_119_79)
GGGGCGGCCAGTGAACGGGCCGCGGCACAGGCGATGGCCGCGGCCCGCCT
GACCGCGCGAGCGGCGGCGCCGACCGCCGTTGCGCTGAACGGCGCCGTAG
CGGCAGGTGCCGTCCCGCTCGCCGACGCATCTACGCCGGCGTCGGCGGCT
CCGGCGACAGCGACGTCGGCGTCTCCGGCAGGTGCGACATCGGCGGATCC
GGCGGTACCGGCCCCGGCGCCGGCGACGTGGGGCATCCCGTTGAACGTGC
GTGTCGGGCGGACGGGCCGCTGGGGCTGCAGCGCGGCGTACACCGGCATC
ATGGCGTCGGAGCGGGTGGAGATCGACGTCAGCTCGCTGCTGGCGCGGGC
AGACGCGGCGGCGGGGGGCGCTGCGGGAGACAAGGGGGCGGCGCGGGACA
TCCACAGCGGGTTCGGCGCCAGCAGCCGCTTCGCAGCGGCGATGGCTGCC
GCGGACGCGGCGCACGCGACGGCAGCGGGCGCAGCGGCGGTGGCCCAGTC
GGGGTCGGGGCCGGTCGGCGCCGGGGATGTCTATGTAGTAGTAAATGGCG
GCCACACGGGCTTCTTCGTGACGCAGTACGACGATGCGGCGTGGCGGGCG
GCGGTGGCGGCGGTTGCCGGCGGGCACTGCTCGGACGTCGAGGCCGTCGG
CTTTGTCTTTGACCACACGCTGAGCATCTTTGCGCTACTGCTTTCCAAGA
GCGCGACCGCGCAGGCGAGAGAGCGAGGGCGCCTGGCGCATTCATCATTT
TATCTTTTCTCCCTTCCCTTTGTCTTCTCTTCCTTGCCGCGCGCTGGAAC
CCACACCAGAGCAATGGGGCGTTCTAATTTACTCTTCCTATTCGAGCCTG
CTTCCTTTATGCGACATTGACCTGTGCGTACAAAGCGCCGCCCAAATGTA
CCATCATTCTCCTCCTGGGTTACCATGGCCGCCTTCCGCCCCTTTCCGCC
TGACCGGCCTCGCCGCTTGCAGGAGGTAGCGGCCCTCCGAATGCGGCTGG
AGGCGGTAGTGGCCGCCGTTGCCGCCCTCGACCGCAGCCACCCAGCGTGG
TGGCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig171:11478..12533+

>mRNA_P-wetherbeei_contig171.6.1 ID=mRNA_P-wetherbeei_contig171.6.1|Name=mRNA_P-wetherbeei_contig171.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=837bp|location=Sequence derived from alignment at P-wetherbeei_contig171:11478..12533+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGCGGCCCGCCTGACCGCGCGAGCGGCGGCGCCGACCGCCGTTGC
GCTGAACGGCGCCGTAGCGGCAGGTGCCGTCCCGCTCGCCGACGCATCTA
CGCCGGCGTCGGCGGCTCCGGCGACAGCGACGTCGGCGTCTCCGGCAGGT
GCGACATCGGCGGATCCGGCGGTACCGGCCCCGGCGCCGGCGACGTGGGG
CATCCCGTTGAACGTGCGTGTCGGGCGGACGGGCCGCTGGGGCTGCAGCG
CGGCGTACACCGGCATCATGGCGTCGGAGCGGGTGGAGATCGACGTCAGC
TCGCTGCTGGCGCGGGCAGACGCGGCGGCGGGGGGCGCTGCGGGAGACAA
GGGGGCGGCGCGGGACATCCACAGCGGGTTCGGCGCCAGCAGCCGCTTCG
CAGCGGCGATGGCTGCCGCGGACGCGGCGCACGCGACGGCAGCGGGCGCA
GCGGCGGTGGCCCAGTCGGGGTCGGGGCCGGTCGGCGCCGGGGATGTCTA
TGTAGTAGTAAATGGCGGCCACACGGGCTTCTTCGTGACGCAGTACGACG
ATGCGGCGTGGCGGGCGGCGGTGGCGGCGGTTGCCGGCGGGCACTGCTCG
GACGTCGAGGCCGTCGGCTTTGTCTTTGACCACACGCTGAGCATCTTTGC
GCTACTGCTTTCCAAGAGCGCGACCGCGCAGGCGAGAGAGCGAGGGCGCC
TGGCGCATTCATCATTTTATCTTTTCTCCCTTCCCTTTGTCTTCTCTTCC
TTGCCGCGCGCTGGAACCCACACCAGAGCAATGGGGCGTTCTAATTTACT
CTTCCTATTCGAGCCTGCTTCCTTTATGCGACATTGA
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