mRNA_P-wetherbeei_contig1708.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1708.3.1
Unique NamemRNA_P-wetherbeei_contig1708.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1708.3.1 vs. uniprot
Match: D8LE53_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE53_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 2.360e-25
Identity = 53/120 (44.17%), Postives = 79/120 (65.83%), Query Frame = -1
Query:  411 FERASEAYAMDNPYAKRPPNTPYAQQRLKSWTPLLTSYKLAGIYMSIAVLFLTIGFVILDESDNVKMYIYQYDGDDSDGDQCKITSQDEGLSCQISFNITETIDAPVYVFYEIDKFYQNH 770
             +R+  A  ++   + +P N PY QQ L+SW+PLLT ++  G Y+ I ++F+ +G V+  + D V++  YQYDGD SDGD CKIT+  E L C I+F++ + I  P YV+YE+  FYQNH
Sbjct:    1 MDRSQAAELIEPELSNKPANRPYYQQTLRSWSPLLTPWRAVGGYLLIGLIFVPLGAVLWHDKDVVELR-YQYDGDGSDGDDCKITTYKENLDCTITFDVEKDIPGPAYVYYELTNFYQNH 119          
BLAST of mRNA_P-wetherbeei_contig1708.3.1 vs. uniprot
Match: W2NTE7_PHYPR (Uncharacterized protein n=14 Tax=Phytophthora TaxID=4783 RepID=W2NTE7_PHYPR)

HSP 1 Score: 99.0 bits (245), Expect = 2.710e-20
Identity = 50/123 (40.65%), Postives = 76/123 (61.79%), Query Frame = -1
Query:  405 AKRPPNTPYAQQRLKSWTPLLTSYKLAGIYMSIAVLFLTIGFVILDESDNVKMYIYQYDGDD--------SDGDQCKITSQDEGLS-------CQISFNITETIDAPVYVFYEIDKFYQNHRR 728
            +++P +TP+ QQ+LK+W P+LT   + G +  + ++F+ IG V+  ESDNV  Y  QYDGDD          G  C ++ + EG S       C+I+F I + + APVY++Y++D FYQNHRR
Sbjct:    5 SRKPEDTPFKQQKLKAWQPILTPNWVIGTFAVVGLIFIPIGIVLHTESDNVVEYSIQYDGDDMTSSSNIVDQGSGCYLSDESEGDSFDVEEHGCRITFKIEKEMKAPVYLYYQLDNFYQNHRR 127          
BLAST of mRNA_P-wetherbeei_contig1708.3.1 vs. uniprot
Match: A0A6S9FRN7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FRN7_HETAK)

HSP 1 Score: 97.8 bits (242), Expect = 5.530e-20
Identity = 50/111 (45.05%), Postives = 67/111 (60.36%), Query Frame = -1
Query:  405 NPYAKRPPNTPYAQQRLKSWTPLLTSYKLAGIYMSIAVLFLTIGFVILDESDNVKMYIYQYDGDDSDGDQCKITSQDEGLSCQISFNITETIDAPVYVFYEIDKFYQNHRR 737
            N   +RP  + + QQRLK+W P+LT   +   +  I VLF+ IG      SD V  Y  QYDGD SD   C ITS  +G  C ++FNI + +D PVY++Y++  FYQNHRR
Sbjct:    6 NSQERRPEESAFKQQRLKAWKPVLTPKWVVSSFAVIGVLFIIIGIAAKVSSDAVTEYKIQYDGDSSD--PCTITSYKQGRECSLTFNIDKDMDGPVYLYYQLTNFYQNHRR 114          
BLAST of mRNA_P-wetherbeei_contig1708.3.1 vs. uniprot
Match: A0A0W8DZW1_PHYNI (Cyclin-dependent kinase 20 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DZW1_PHYNI)

HSP 1 Score: 99.0 bits (245), Expect = 7.700e-20
Identity = 50/123 (40.65%), Postives = 76/123 (61.79%), Query Frame = -1
Query:  405 AKRPPNTPYAQQRLKSWTPLLTSYKLAGIYMSIAVLFLTIGFVILDESDNVKMYIYQYDGDD--------SDGDQCKITSQDEGLS-------CQISFNITETIDAPVYVFYEIDKFYQNHRR 728
            +++P +TP+ QQ+LK+W P+LT   + G +  + ++F+ IG V+  ESDNV  Y  QYDGDD          G  C ++ + EG S       C+I+F I + + APVY++Y++D FYQNHRR
Sbjct:    5 SRKPEDTPFKQQKLKAWQPILTPNWVIGTFAVVGLIFIPIGIVLHTESDNVVEYSIQYDGDDMTSSSNIVDQGSGCYLSDESEGDSFDVEEHGCRITFKIEKEMKAPVYLYYQLDNFYQNHRR 127          
BLAST of mRNA_P-wetherbeei_contig1708.3.1 vs. uniprot
Match: A0A7S2D039_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D039_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.560e-19
Identity = 48/114 (42.11%), Postives = 75/114 (65.79%), Query Frame = -1
Query:  405 DNPYAKRPPNTPYAQQRLKSWTPLLTSYKLAGIYMSIAVLFLTIGFVILDESDNVKMYIYQYDGDDSDGDQ--CKITSQDEGLSCQISFNITETIDAPVYVFYEIDKFYQNHRR 740
            +N  +++P +T + QQRL +W P+LT   + G +++I  LFL +G VI   SD++   I QYDG  ++  Q  CK+++   G  CQI+F   E ++AP+YV+Y+ID FYQNHR+
Sbjct:    3 ENGGSRKPADTAFRQQRLPAWQPILTPNAVIGFFLAIGTLFLILGIVIQQASDSIVEKIVQYDGSGTNSAQSDCKLSN---GGDCQITFTAPEKMEAPIYVYYQIDNFYQNHRK 113          
BLAST of mRNA_P-wetherbeei_contig1708.3.1 vs. uniprot
Match: A0A3R7HW45_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HW45_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 2.570e-19
Identity = 52/125 (41.60%), Postives = 76/125 (60.80%), Query Frame = -1
Query:  405 AKRPPNTPYAQQRLKSWTPLLTSYKLAGIYMSIAVLFLTIGFVILDESDNVKMYIYQYDGD-----DSD-----GDQCKITSQDEGLS-------CQISFNITETIDAPVYVFYEIDKFYQNHRR 728
            +++P +TP+ QQ+LK+W P+LT   + G +  + ++F+ IG V+  ESDNV  Y  QYDGD     DS      G  C +  +DEG S       C+I+F I   + APVY++Y++D FYQNHRR
Sbjct:    5 SRKPEDTPFKQQKLKAWQPILTPNWVIGTFAVVGLIFIPIGIVLHTESDNVVEYSIQYDGDGMSTADSSNIVDLGSGCYLGDEDEGDSFDVDEHGCRITFKIDRDMKAPVYLYYQLDNFYQNHRR 129          
BLAST of mRNA_P-wetherbeei_contig1708.3.1 vs. uniprot
Match: A0A2P4XM33_9STRA (CMGC/CDK protein Kinase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XM33_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.300e-19
Identity = 49/123 (39.84%), Postives = 77/123 (62.60%), Query Frame = -1
Query:  405 AKRPPNTPYAQQRLKSWTPLLTSYKLAGIYMSIAVLFLTIGFVILDESDNVKMYIYQYDGDDSD--------GDQCKITSQDEGLS-------CQISFNITETIDAPVYVFYEIDKFYQNHRR 728
            +++P +TP+ QQ+LK+W P+LT   + G +  + ++F+ IG V+  ESDNV  Y  QYDG+           GD C ++ +DEG +       C+I+F I + + APVY++Y++D FYQNHRR
Sbjct:    5 SRKPEDTPFKQQKLKAWQPILTPNWVIGTFAVVGLIFIPIGIVLHTESDNVVEYSIQYDGEGVTESSNIVDIGDGCYLSDEDEGDTFDVDTHGCRITFKIEKEMKAPVYLYYQLDNFYQNHRR 127          
BLAST of mRNA_P-wetherbeei_contig1708.3.1 vs. uniprot
Match: A0A7S3Q2P2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q2P2_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 4.730e-19
Identity = 49/110 (44.55%), Postives = 68/110 (61.82%), Query Frame = -1
Query:  408 KRPPNTPYAQQRLKSWTPLLTSYKLAGIYMSIAVLFLTIGFVILDESDNVKMYIYQYDGDDSD----GDQCKITSQDEGLSCQISFNITETIDAPVYVFYEIDKFYQNHR 725
            + P +T   QQR+K+W P+L    +   ++ I  LF+  G+ +   SDNVK Y  QYDG D D    G  C I   +EG  CQISFN+TE ++AP+ V+YEI+ F+QNHR
Sbjct:   13 REPEDTDVRQQRVKAWNPILDPVYVILGFLGIGALFIPTGWKLRQISDNVKEYGLQYDGPDEDFDDDGSPCAIGVANEGRKCQISFNVTEEMEAPIMVYYEIENFHQNHR 122          
BLAST of mRNA_P-wetherbeei_contig1708.3.1 vs. uniprot
Match: K3WM57_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WM57_GLOUD)

HSP 1 Score: 95.5 bits (236), Expect = 4.810e-19
Identity = 47/125 (37.60%), Postives = 78/125 (62.40%), Query Frame = -1
Query:  405 AKRPPNTPYAQQRLKSWTPLLTSYKLAGIYMSIAVLFLTIGFVILDESDNVKMYIYQYDGDDSD----------GDQCKITSQDEGLS-------CQISFNITETIDAPVYVFYEIDKFYQNHRR 728
            +++P +TP+ QQ+LK+W P+LT   + G +  + ++F+ IG ++  ES+NV  Y  QYDG D++          GD C + ++ EG +       C ++F+I + + APVYV+Y++D FYQNHRR
Sbjct:    5 SRKPEDTPFKQQKLKAWQPILTPNWVIGSFALVGLIFIPIGIILHTESENVVEYSIQYDGQDANSTASSNIRGFGDGCYLAAESEGNAFNYSTRGCLLTFDIQKDMKAPVYVYYQLDNFYQNHRR 129          
BLAST of mRNA_P-wetherbeei_contig1708.3.1 vs. uniprot
Match: A0A6H5JEE3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEE3_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 6.160e-19
Identity = 41/108 (37.96%), Postives = 72/108 (66.67%), Query Frame = -1
Query:  405 AKRPPNTPYAQQRLKSWTPLLTSYKLAGIYMSIAVLFLTIGFVILDESDNVKMYIYQYDGDDSDGDQCKITSQDEGLSCQISFNITETIDAPVYVFYEIDKFYQNHRR 728
            ++RP +TP+ QQR+ S+ P+L    + GI+ +I V F+ +G   ++ES+ V  +  +YDGD  D + CKIT +++G +C +   + E +  P+YV+YE++ ++QNHRR
Sbjct:   28 SRRPKDTPFRQQRVTSFLPILQPLLVVGIFFAIGVAFIPLGKWFIEESEEVVEFKRRYDGDSVDVEGCKITERNQGTTCSVQIEVDEFMKPPIYVYYELNNYFQNHRR 135          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1708.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE53_ECTSI2.360e-2544.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W2NTE7_PHYPR2.710e-2040.65Uncharacterized protein n=14 Tax=Phytophthora TaxI... [more]
A0A6S9FRN7_HETAK5.530e-2045.05Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0W8DZW1_PHYNI7.700e-2040.65Cyclin-dependent kinase 20 n=1 Tax=Phytophthora ni... [more]
A0A7S2D039_9STRA1.560e-1942.11Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A3R7HW45_9STRA2.570e-1941.60Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A2P4XM33_9STRA3.300e-1939.84CMGC/CDK protein Kinase n=1 Tax=Phytophthora palmi... [more]
A0A7S3Q2P2_9STRA4.730e-1944.55Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
K3WM57_GLOUD4.810e-1937.60Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6H5JEE3_9PHAE6.160e-1937.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1708contigP-wetherbeei_contig1708:5443..6255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size779
Hectar predicted targeting categoryother localisation
Exons2
Cds size414
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186107.015194-UTR-P-wetherbeei_contig1708:5442..58071683186107.015194-UTR-P-wetherbeei_contig1708:5442..5807Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1708 5443..5807 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186107.024207-CDS-P-wetherbeei_contig1708:5807..59511683186107.024207-CDS-P-wetherbeei_contig1708:5807..5951Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1708 5808..5951 -
1683186107.0333571-CDS-P-wetherbeei_contig1708:5985..62551683186107.0333571-CDS-P-wetherbeei_contig1708:5985..6255Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1708 5986..6255 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1708.3.1prot_P-wetherbeei_contig1708.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1708 5808..6255 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1708.3.1

>prot_P-wetherbeei_contig1708.3.1 ID=prot_P-wetherbeei_contig1708.3.1|Name=mRNA_P-wetherbeei_contig1708.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=138bp
LAVRRHVPGAVVAIKGVAGEDGEAEDGISQVEGERRGTLLFLACSFRYSA
KERSRASGTRDNTGRWTSLEGAEDAQGINQAGANESCPRSRHCCEVCAML
ILSSCRLNAPSRRHSIELERETRAPALQPLATSPHLL*
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mRNA from alignment at P-wetherbeei_contig1708:5443..6255-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1708.3.1 ID=mRNA_P-wetherbeei_contig1708.3.1|Name=mRNA_P-wetherbeei_contig1708.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=813bp|location=Sequence derived from alignment at P-wetherbeei_contig1708:5443..6255- (Phaeothamnion wetherbeei SAG_119_79)
CTGGCTGTACGACGACACGTACCTGGCGCGGTGGTGGCGATCAAAGGTGT CGCGGGGGAAGATGGAGAGGCAGAGGATGGCATTAGCCAGGTTGAGGGGG AAAGGAGAGGAACGCTGCTTTTTCTTGCGTGCTCCTTCAGGTACTCGGCG AAGGAGCGGAGTCGAGCCTCAGGAACGAGGGATAACACGGGCCGCTGGAC GAGTCTCGAAGGAGCAGAAGATGCACAGGGGATAAACCAGGCTGGGGCGA ACGAATCTTGTCCAAGGAGCGTAAGATGACGCAGCAGAGAGGAGCAATAA ATAGAGACACTGCTGTGAAGTGTGCGCAATGCTCATTCTTTCAAGCTGCC GATTGAACGCACCGTCACGGCGACACAGCATCGAGTTGGAAAGAGAAACT CGCGCACCGGCGTTGCAACCCCTCGCCACCAGTCCTCACCTTCTATGATT TTGGTAAAACTTGTCGATCTCGTAAAAGACGTAAACGGGCGCATCGATTG TCTCGGTGATGTTGAAGCTTATTTGGCAGGACAAGCCCTCATCTTGCGAC GTGATCTTACATTGGTCCCCGTCGCTGTCATCGCCGTCGTATTGGTAGAT GTACATCTTTACGTTGTCGCTCTCATCCAAGATGACGAAGCCGATCGTGA GGAAGAGGACGGCAATCGACATGTAAATGCCGGCCAACTTGTACGAGGTG AGAAGCGGCGTCCATGACTTTAATCGCTGCTGTGCGTACGGCGTGTTCGG CGGCCGCTTTGCGTACGGATTATCCATGGCGTACGCCTCGCTTGCACGTT CGAAGAGGGTACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1708:5443..6255-

>mRNA_P-wetherbeei_contig1708.3.1 ID=mRNA_P-wetherbeei_contig1708.3.1|Name=mRNA_P-wetherbeei_contig1708.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig1708:5443..6255- (Phaeothamnion wetherbeei SAG_119_79)
CTGGCTGTACGACGACACGTACCTGGCGCGGTGGTGGCGATCAAAGGTGT
CGCGGGGGAAGATGGAGAGGCAGAGGATGGCATTAGCCAGGTTGAGGGGG
AAAGGAGAGGAACGCTGCTTTTTCTTGCGTGCTCCTTCAGGTACTCGGCG
AAGGAGCGGAGTCGAGCCTCAGGAACGAGGGATAACACGGGCCGCTGGAC
GAGTCTCGAAGGAGCAGAAGATGCACAGGGGATAAACCAGGCTGGGGCGA
ACGAATCTTGTCCAAGGAGCAGACACTGCTGTGAAGTGTGCGCAATGCTC
ATTCTTTCAAGCTGCCGATTGAACGCACCGTCACGGCGACACAGCATCGA
GTTGGAAAGAGAAACTCGCGCACCGGCGTTGCAACCCCTCGCCACCAGTC
CTCACCTTCTATGA
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