mRNA_P-wetherbeei_contig1708.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1708.1.1
Unique NamemRNA_P-wetherbeei_contig1708.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1708.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1708contigP-wetherbeei_contig1708:738..1575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size661
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_001070.1
Cds size633
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186106.965722-CDS-P-wetherbeei_contig1708:737..10401683186106.965722-CDS-P-wetherbeei_contig1708:737..1040Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1708 738..1040 -
1683186106.974206-CDS-P-wetherbeei_contig1708:1219..15491683186106.974206-CDS-P-wetherbeei_contig1708:1219..1549Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1708 1220..1549 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186106.982127-UTR-P-wetherbeei_contig1708:1549..15751683186106.982127-UTR-P-wetherbeei_contig1708:1549..1575Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1708 1550..1575 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1708.1.1prot_P-wetherbeei_contig1708.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1708 738..1549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1708.1.1

>prot_P-wetherbeei_contig1708.1.1 ID=prot_P-wetherbeei_contig1708.1.1|Name=mRNA_P-wetherbeei_contig1708.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=211bp
MGNQPPGRPVRAASSPPRTQVEVSRANTRHRQQRSTRARAHTVQAGAGSS
DWYHNPYLLAPPELLYGDGPSASLTPRQQDIDPEVAALHEEVFIKHIKHA
LDSALKLLSQEGGGGGWIVSGLLRKSGVAGGLVDALVAFVEGRATGLLAS
LSIKQTARALAKCLRRHLTTREAVDAALARAAADADAARRVCRGVRGSGG
NGGGGGGGGGG
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mRNA from alignment at P-wetherbeei_contig1708:738..1575-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1708.1.1 ID=mRNA_P-wetherbeei_contig1708.1.1|Name=mRNA_P-wetherbeei_contig1708.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=838bp|location=Sequence derived from alignment at P-wetherbeei_contig1708:738..1575- (Phaeothamnion wetherbeei SAG_119_79)
TCTGCATTGCAAACGAGCATCGAGCGATGGGCAATCAGCCGCCTGGGCGA
CCTGTTCGCGCAGCGTCGTCTCCGCCGAGGACGCAAGTGGAGGTATCACG
TGCAAACACAAGACATCGACAGCAGCGCTCCACGCGCGCTCGAGCACACA
CTGTGCAGGCGGGGGCAGGTTCGAGTGATTGGTATCACAACCCTTACCTT
TTGGCGCCGCCGGAGCTCCTTTACGGGGACGGGCCAAGTGCTTCTTTAAC
ACCTCGTCAACAAGACATCGACCCCGAGGTCGCGGCCTTACACGAGGAGG
TGTTCATCAAGCACATCAAGCATGCTCTTGACAGTGCATTGAAGCTTCTC
TCTCAGGTGCTAACGCGTCGGTTTCTTTACGCGTCTTTTTCAGAGCCAAC
GCTGTCCTCGTCTTATCGACATGATGTTTGCCAAAGACGCATGTGAGACC
ACCGGCACTTCTAAATCAACTTACCGTTCCTCCAACCTCTTTCCTCACTA
GACAAGTTGCTGTCCTTGCACACGGCCATCAACAGGAGGGCGGTGGCGGC
GGATGGATCGTCTCTGGCCTCCTCCGCAAGAGCGGCGTCGCCGGAGGGCT
CGTCGATGCGCTCGTGGCCTTCGTCGAGGGCCGCGCCACGGGGCTCTTGG
CCAGCTTATCAATCAAGCAGACGGCGCGCGCTCTCGCAAAGTGCCTCCGG
CGCCACCTGACGACCCGAGAAGCCGTCGACGCTGCGCTGGCCCGGGCGGC
GGCCGACGCCGACGCGGCGCGGCGGGTGTGCAGGGGGGTGCGCGGCTCTG
GTGGCAACGGCGGCGGCGGCGGCGGCGGTGGAGGGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1708:738..1575-

>mRNA_P-wetherbeei_contig1708.1.1 ID=mRNA_P-wetherbeei_contig1708.1.1|Name=mRNA_P-wetherbeei_contig1708.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=633bp|location=Sequence derived from alignment at P-wetherbeei_contig1708:738..1575- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCAATCAGCCGCCTGGGCGACCTGTTCGCGCAGCGTCGTCTCCGCC
GAGGACGCAAGTGGAGGTATCACGTGCAAACACAAGACATCGACAGCAGC
GCTCCACGCGCGCTCGAGCACACACTGTGCAGGCGGGGGCAGGTTCGAGT
GATTGGTATCACAACCCTTACCTTTTGGCGCCGCCGGAGCTCCTTTACGG
GGACGGGCCAAGTGCTTCTTTAACACCTCGTCAACAAGACATCGACCCCG
AGGTCGCGGCCTTACACGAGGAGGTGTTCATCAAGCACATCAAGCATGCT
CTTGACAGTGCATTGAAGCTTCTCTCTCAGGAGGGCGGTGGCGGCGGATG
GATCGTCTCTGGCCTCCTCCGCAAGAGCGGCGTCGCCGGAGGGCTCGTCG
ATGCGCTCGTGGCCTTCGTCGAGGGCCGCGCCACGGGGCTCTTGGCCAGC
TTATCAATCAAGCAGACGGCGCGCGCTCTCGCAAAGTGCCTCCGGCGCCA
CCTGACGACCCGAGAAGCCGTCGACGCTGCGCTGGCCCGGGCGGCGGCCG
ACGCCGACGCGGCGCGGCGGGTGTGCAGGGGGGTGCGCGGCTCTGGTGGC
AACGGCGGCGGCGGCGGCGGCGGTGGAGGGGGC
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