mRNA_P-wetherbeei_contig17078.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig17078.1.1 vs. uniprot
Match: D7FZK3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZK3_ECTSI) HSP 1 Score: 116 bits (290), Expect = 2.210e-27 Identity = 66/152 (43.42%), Postives = 87/152 (57.24%), Query Frame = 1
Query: 37 GKTAQYMFCGEDVLEIQVLRP-DAGQFASYLIDQRVQSDGALFVATRVDPALLLLPHLAEHALRWSPLDQILAAAGCAALRPCR----DRLAAAAAGNXXXXXXXXXXXXXXXXXXXXLGFCDVNDRLGPDELLYRANDDKTLAWLRAKVDR 477
G+ ++M G+++LE+QV RP + + AS+ IDQ VQ DGA+ A+RVDP LLLP LA+HA RW PL Q +A GC +LR R D+L CDVNDR+GPD+LL R N++ LAWL AKV+R
Sbjct: 7 GEATKFMMVGDNLLELQVARPREPQELASFFIDQAVQQDGAVHAASRVDPLFLLLPVLAKHATRWCPLAQAMAEGGCGSLRGLRHLDADKL------------------------------CDVNDRMGPDDLLIRINEESVLAWLTAKVER 128
BLAST of mRNA_P-wetherbeei_contig17078.1.1 vs. uniprot
Match: A0A835YS23_9STRA (Ribonuclease H2, subunit B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS23_9STRA) HSP 1 Score: 108 bits (270), Expect = 2.150e-24 Identity = 71/164 (43.29%), Postives = 86/164 (52.44%), Query Frame = 1
Query: 19 MSHPRTGKTAQYMFCGE-------DVLEIQVLRPDAGQFASYLIDQRVQSDGALFVATRVDPALLLLPHLAEHALRWSPLDQILAAAGCAALRPCRDRLAAAAAGNXXXXXXXXXXXXXXXXXXXXLG---FCDVNDRLGPDELLYRANDDKTLAWLRAKVDRV 480
M+HPRTG+ +++ DVLE+QV R F S+ + Q VQSDGA+++ATRVDPALLLLP + RW PL Q L A A L CR LG CDVNDRLGPD +LYR N+ K LAWL +KVDRV
Sbjct: 1 MAHPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVAPTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAWLLRCRH-----------------------------LGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRV 135
BLAST of mRNA_P-wetherbeei_contig17078.1.1 vs. uniprot
Match: A0A7S2XY24_9STRA (Ribonuclease H2 subunit B n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY24_9STRA) HSP 1 Score: 100 bits (249), Expect = 4.740e-21 Identity = 73/210 (34.76%), Postives = 107/210 (50.95%), Query Frame = 1
Query: 7 NIVAMSHPRTGKTAQYMFCGEDVLEIQVLRPDAGQFASYLIDQRVQSDGALFVATRVDPALLLLPHLAEHA-LRWSPLDQILAAAG----CAALRPCR----DRLAAAAAGNXXXXXXXXXXXXXXXXXXXXLGFCDVNDRLGPDELLYRANDDKTLAWLRAKVDRVLFVLAAQAAA----CATAAGAVSRAGGGDAPGSASFAGALQCG 597
+I+++ HPR+G+ +YM G+D+LE+Q + +++S+ ID V+SD L+V TRVDP LLLLP LA A R+ PLDQ ++++ L CR D++ CDVND+LGP+ +LYR N+ K + WL+ KV+R LA C A + S A G AP + + AGA G
Sbjct: 43 SIISLKHPRSGELLKYMAAGQDILELQ--KVSVSKYSSFFIDNSVKSDAVLWVGTRVDPLLLLLPCLAHQAQARFVPLDQAVSSSSGDDDSLQLLKCRHLDLDKI------------------------------CDVNDKLGPETMLYRLNEGKVVGWLKGKVERAQRHLARVEPRADDPCGGAGDSASFAAGFQAPRTDASAGAADSG 220
BLAST of mRNA_P-wetherbeei_contig17078.1.1 vs. uniprot
Match: A0A4D9DAM5_9STRA (Ribonuclease H2 subunit B n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAM5_9STRA) HSP 1 Score: 100 bits (250), Expect = 8.230e-21 Identity = 70/175 (40.00%), Postives = 90/175 (51.43%), Query Frame = 1
Query: 1 LANIVAMSHPRTGKTAQYMFCGEDVL-EIQVLRPDAGQFASYLIDQRVQSDGALFVATRVDPALLLLPHLAEH-ALRWSPLDQILAA---AGCAALRPCRDRLAAAAAGNXXXXXXXXXXXXXXXXXXXXLGFCDVNDRLGPDELLYRANDDKTLAWLRAKVDRVLFVLAAQAAA 510
L ++A +HPR G +QY+ L E+Q RP +F S+ ++QRV SDG L+VA+ VDP L+LLP L +H A R+SPL Q+LAA ALR C+ CDVND+LG D LLYR N +KT+ WL KV R L A AA
Sbjct: 39 LGQVLAFTHPRGGYPSQYLLSPAGQLCELQSFRPSGSKFGSWFVEQRVVSDGLLYVASPVDPKLILLPVLEKHGATRFSPLAQLLAAEADGAYLALRQCQG--------------------------LDLHLVCDVNDQLGEDMLLYRLNAEKTMDWLAKKVARATQALVALEAA 187
BLAST of mRNA_P-wetherbeei_contig17078.1.1 vs. uniprot
Match: A0A2B4SSH9_STYPI (Ribonuclease H2 subunit B n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SSH9_STYPI) HSP 1 Score: 69.7 bits (169), Expect = 3.500e-10 Identity = 48/158 (30.38%), Postives = 73/158 (46.20%), Query Frame = 1
Query: 13 VAMSHPRTGKTAQYMFC--GEDVLEIQVLRPDAGQFASYLIDQRVQSDGALFVATRVDPALLLLPHLAEHALRWSPLDQILAAAGCAALRPCRDRLAAAAAGNXXXXXXXXXXXXXXXXXXXXLGFCDVNDRLGPDEL-LYRANDDKTLAWLRAKVDR 477
+ + HPRTG Q++ GE + E+ + S+ I+ VQ DG+LFV T VDP L+LP+L +++ ++ LDQ+L L CDV G D+L ++R N+DKT AWL+AKV++
Sbjct: 40 IKIPHPRTGNNQQFLLTHSGEKIFEVLKFTEEP---RSWFIEDSVQKDGSLFVITPVDPLFLVLPYLTKYSQKFRTLDQLL----------------------LDDEHPPICRLTGCLSSDEILNICDVK---GDDDLQVFRLNNDKTTAWLKAKVEQ 169
BLAST of mRNA_P-wetherbeei_contig17078.1.1 vs. uniprot
Match: A0A2P6U1T4_CHLSO (Ribonuclease H2 subunit B n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U1T4_CHLSO) HSP 1 Score: 67.0 bits (162), Expect = 2.150e-9 Identity = 52/160 (32.50%), Postives = 74/160 (46.25%), Query Frame = 1
Query: 7 NIVAMSHPRTGKTAQYMFCGEDVLEIQVLRPDAGQFASYLIDQRVQSDGALFVATRVDPALLLLPHLAEHALR---WSPLDQILAAAGCAALRPCRDRLAAAAAGNXXXXXXXXXXXXXXXXXXXXLGFCDVNDRLGPDELLYRANDDKTLAWLRAKVDR 477
+ + + P+TG+ A Y+ G + EI + Q++S+ I +RVQ DG LF+AT VDP LL+LP L + + + L+QIL+ A P LA CD G + YR NDD+ LAWLR KVD+
Sbjct: 23 HFITLPDPKTGQAAAYLLAGSCLQEINWFKQ---QYSSWFIGERVQQDGGLFLATPVDPLLLVLPLLEQARAQQNVFQDLEQILSMAAS----PSAHLLA-----------------PLLEQGGQLSCLCDAKAAGG--QSYYRLNDDRVLAWLRLKVDQ 156
BLAST of mRNA_P-wetherbeei_contig17078.1.1 vs. uniprot
Match: UPI0018D6D685 (ribonuclease H2 subunit B-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D6D685) HSP 1 Score: 66.2 bits (160), Expect = 6.050e-9 Identity = 54/160 (33.75%), Postives = 78/160 (48.75%), Query Frame = 1
Query: 13 VAMSHPRTGKTAQYMFC--GEDVLEIQVLRPDAGQFASYLIDQRVQSDGALFVATRVDPALLLLPHL--AEHALRWSPLDQILAAAGCAALRPCRDRLAAAAAGNXXXXXXXXXXXXXXXXXXXXLGFCDVNDRLGPDELLYRANDDKTLAWLRAKVDRV 480
V + HP+T K+A +MF G VLE+ + + S+ ID+ VQ DG+L +AT +DP L+LP+L AE + ++ LDQIL A P RLA + + C + R D YR + DK L WL+AKV+R+
Sbjct: 53 VKLKHPKTEKSAMFMFSSDGSTVLELLSFKE---KHRSWFIDESVQEDGSLMMATPIDPLFLILPYLVKAEKSGKYITLDQILDDADY----PQCHRLARCSGASHLH--------------------CISSVRGASDVQAYRYDSDKALDWLKAKVERL 185
BLAST of mRNA_P-wetherbeei_contig17078.1.1 vs. uniprot
Match: A0A023F7A5_TRIIF (Ribonuclease H2 subunit B (Fragment) n=1 Tax=Triatoma infestans TaxID=30076 RepID=A0A023F7A5_TRIIF) HSP 1 Score: 64.7 bits (156), Expect = 1.290e-8 Identity = 55/163 (33.74%), Postives = 78/163 (47.85%), Query Frame = 1
Query: 7 NIVAMSHPRTGKTAQYMFCGEDVLEIQVLRPDAGQFASYLIDQRVQSDGALFVATRVDPALLLLPHLAEHALRWSPLDQILAAAGCAALRPCRDRLAAAAAGNXXXXXXXXXXXXXXXXXXXXLGFCDVNDRLGPDEL-LYRANDDKTLAWLRAKVDRVLFVL 492
+I + HP+TG+ A Y + V E+ SY ID V SDG L++++ +DP L+LP+L + A SPLDQIL P +RL N ++DR G +EL Y N+DKTLAWL+ K+DR++ VL
Sbjct: 12 DISKLRHPKTGEGA-YFIVNKKVHEVLKFSDSK---RSYFIDDNVTSDGDLYISSPIDPLFLILPYLTK-AKHCSPLDQILIDEDY----PEIERLLNCEEINQLHL---------------------ISDRKGDEELNAYIYNEDKTLAWLQKKLDRIVDVL 144
BLAST of mRNA_P-wetherbeei_contig17078.1.1 vs. uniprot
Match: UPI00062512B3 (ribonuclease H2 subunit B n=1 Tax=Orussus abietinus TaxID=222816 RepID=UPI00062512B3) HSP 1 Score: 63.5 bits (153), Expect = 4.570e-8 Identity = 52/165 (31.52%), Postives = 81/165 (49.09%), Query Frame = 1
Query: 1 LANIVAMSHPRTGKTAQYMFCGEDVLEIQVLRPDAGQFASYLIDQRVQSDGALFVATRVDPALLLLPHLAEHALRWSPLDQILAAAGCAALRPCRDRLAAAAAGNXXXXXXXXXXXXXXXXXXXXLGFCDVNDRLGPDELL-YRANDDKTLAWLRAKVDRVLFVL 492
L +IV + HP + + A ++F D+ +VL D + S+ +D V+SDG + ++T +DP L+LP+L + + +PL+Q L P RLA L + DR G ++LL ++ N+DKTL WLR KV+RV VL
Sbjct: 40 LPDIVKLKHPASNQPAMFVFSPGDLTVQEVLTFDENK-RSWFVDDYVKSDGKMHLSTPIDPIFLVLPYL-QKSQHVAPLEQSLHDDDY----PETTRLA----------------------RCQNLKVSLIADRYGDEDLLAFKYNEDKTLRWLRRKVERVAEVL 176
BLAST of mRNA_P-wetherbeei_contig17078.1.1 vs. uniprot
Match: UPI000C203A1E (ribonuclease H2 subunit B isoform X1 n=1 Tax=Onthophagus taurus TaxID=166361 RepID=UPI000C203A1E) HSP 1 Score: 63.5 bits (153), Expect = 4.780e-8 Identity = 48/165 (29.09%), Postives = 82/165 (49.70%), Query Frame = 1
Query: 7 NIVAMSHPRTGKTAQYMFCGEDVLEIQVLRPDAGQFASYLIDQRVQSDGALFVATRVDPALLLLPHLAEHALRWS-PLDQILAAAGCAALRPCRDRLAAAAAGNXXXXXXXXXXXXXXXXXXXXLGFCD-VNDRLGPDEL-LYRANDDKTLAWLRAKVDRVLFVL 492
+IV + HP TG++A ++F + ++L G+ S+ ID+ V+SDG + ++T +DP L+LP+L ++ + PLDQ+L RD L + + + DR G D+L ++ N++KTLAWL+ K +RV +L
Sbjct: 45 DIVTLRHPNTGESAVFLFSPANNSVQEILTFSEGK-RSWFIDESVKSDGKMHLSTPIDPIFLVLPYLKKYCSTQAIPLDQLL-----------RDE---------------EYPETERLLKSSGLKYLNLIADRKGDDDLNAFKYNEEKTLAWLKKKTERVADIL 182 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17078.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig17078.1.1 >prot_P-wetherbeei_contig17078.1.1 ID=prot_P-wetherbeei_contig17078.1.1|Name=mRNA_P-wetherbeei_contig17078.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=256bp MSHPRTGKTAQYMFCGEDVLEIQVLRPDAGQFASYLIDQRVQSDGALFVAback to top mRNA from alignment at P-wetherbeei_contig17078:260..1397+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig17078.1.1 ID=mRNA_P-wetherbeei_contig17078.1.1|Name=mRNA_P-wetherbeei_contig17078.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1138bp|location=Sequence derived from alignment at P-wetherbeei_contig17078:260..1397+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig17078:260..1397+ >mRNA_P-wetherbeei_contig17078.1.1 ID=mRNA_P-wetherbeei_contig17078.1.1|Name=mRNA_P-wetherbeei_contig17078.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=768bp|location=Sequence derived from alignment at P-wetherbeei_contig17078:260..1397+ (Phaeothamnion wetherbeei SAG_119_79)back to top |