mRNA_P-wetherbeei_contig17037.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17037.2.1
Unique NamemRNA_P-wetherbeei_contig17037.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17037.2.1 vs. uniprot
Match: A0A6N7AMB7_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A6N7AMB7_9PROT)

HSP 1 Score: 46.2 bits (108), Expect = 9.800e-6
Identity = 22/40 (55.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    1 MRRPLLLALIGLLVILAGFVAFLATWDIPAPTARIEKTIP 120
            M+R   + ++ +L IL G + FLATWDIP PTAR+EK IP
Sbjct:    1 MQRLSRILVVLILAILLGAIGFLATWDIPPPTARVEKAIP 40
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BLAST of mRNA_P-wetherbeei_contig17037.2.1 vs. uniprot
Match: A0A8I1WVW0_9PROT (Uncharacterized protein n=2 Tax=Thalassospira TaxID=168934 RepID=A0A8I1WVW0_9PROT)

HSP 1 Score: 43.9 bits (102), Expect = 7.750e-5
Identity = 19/32 (59.38%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   25 LIGLLVILAGFVAFLATWDIPAPTARIEKTIP 120
            L+ ++ ++AG   FL TWDIPAPTA+IE+TIP
Sbjct:    9 LLLVIAVIAGGATFLVTWDIPAPTAQIEETIP 40
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BLAST of mRNA_P-wetherbeei_contig17037.2.1 vs. uniprot
Match: A0A7W9ZGG1_NOVIT (Na+/H+ antiporter NhaC n=1 Tax=Novispirillum itersonii TaxID=189 RepID=A0A7W9ZGG1_NOVIT)

HSP 1 Score: 43.9 bits (102), Expect = 7.910e-5
Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:   22 ALIGLLVILAGFVAFLATWDIPAPTARIEKTIP 120
            ALI +LV++ G V FLATWD+P P+A +EK IP
Sbjct:    8 ALIMVLVLVVGGVGFLATWDMPPPSAHVEKVIP 40
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17037.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6N7AMB7_9PROT9.800e-655.00Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A8I1WVW0_9PROT7.750e-559.38Uncharacterized protein n=2 Tax=Thalassospira TaxI... [more]
A0A7W9ZGG1_NOVIT7.910e-560.61Na+/H+ antiporter NhaC n=1 Tax=Novispirillum iters... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17037contigP-wetherbeei_contig17037:1345..1464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1528106.JRJE01000006_gene1169
Model size120
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categorysignal peptide
Exons1
Evalue6.29e-06
EggNOG OGs2DRIP@1|root,33BYP@2|Bacteria,1NHFQ@1224|Proteobacteria,2UK8U@28211|Alphaproteobacteria,2JUKJ@204441|Rhodospirillales
Cds size120
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186105.884219-CDS-P-wetherbeei_contig17037:1344..14641683186105.884219-CDS-P-wetherbeei_contig17037:1344..1464Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17037 1345..1464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17037.2.1prot_P-wetherbeei_contig17037.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17037 1345..1464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17037.2.1

>prot_P-wetherbeei_contig17037.2.1 ID=prot_P-wetherbeei_contig17037.2.1|Name=mRNA_P-wetherbeei_contig17037.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=40bp
MRRPLLLALIGLLVILAGFVAFLATWDIPAPTARIEKTIP
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mRNA from alignment at P-wetherbeei_contig17037:1345..1464+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17037.2.1 ID=mRNA_P-wetherbeei_contig17037.2.1|Name=mRNA_P-wetherbeei_contig17037.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=120bp|location=Sequence derived from alignment at P-wetherbeei_contig17037:1345..1464+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTCGCCCGCTTTTGCTGGCTCTGATCGGCCTTCTGGTCATTCTTGC
CGGCTTCGTGGCCTTCCTTGCCACCTGGGACATCCCCGCGCCGACGGCGC
GCATCGAGAAGACGATCCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17037:1345..1464+

>mRNA_P-wetherbeei_contig17037.2.1 ID=mRNA_P-wetherbeei_contig17037.2.1|Name=mRNA_P-wetherbeei_contig17037.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=120bp|location=Sequence derived from alignment at P-wetherbeei_contig17037:1345..1464+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTCGCCCGCTTTTGCTGGCTCTGATCGGCCTTCTGGTCATTCTTGC
CGGCTTCGTGGCCTTCCTTGCCACCTGGGACATCCCCGCGCCGACGGCGC
GCATCGAGAAGACGATCCCC
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