mRNA_P-wetherbeei_contig17037.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17037.1.1
Unique NamemRNA_P-wetherbeei_contig17037.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17037.1.1 vs. uniprot
Match: A0A6A8QEA8_9PROT (Shikimate kinase n=1 Tax=Telmatospirillum sp. TaxID=2079197 RepID=A0A6A8QEA8_9PROT)

HSP 1 Score: 233 bits (595), Expect = 1.080e-75
Identity = 113/170 (66.47%), Postives = 139/170 (81.76%), Query Frame = 1
Query:    4 VDRSIVMVGLMGAGKTAIGKRLAARLALPFVDTDKEIEQAAGCAIPEIFARYGEPAFRDGERRVIARLLAGPRCVLATGGGAFMDPETRAAVKAAGLSVWLKADLDTLVRRTARRTNRPLLNRGNPRDVLANLMDARYPVYAEADIHVQSLESPPDETTSRVVDALSRHF 513
            + RSIV+VGLMGAGK+ +G+RLA RL LPF+D D EIE AAGC+I EIFARYGE AFRDGER+V+ RLLAGPRCVLATGGGAFMDPETRA +   G+SVW++ADLD LV+RTA R +RPLL +G+PR++L  L+  RYPVYA AD+ V + + PP+ T  RV+DAL+RH 
Sbjct:    8 IPRSIVLVGLMGAGKSCVGRRLAQRLGLPFIDADTEIEAAAGCSISEIFARYGEGAFRDGERKVVGRLLAGPRCVLATGGGAFMDPETRALIAEKGISVWIRADLDLLVKRTAGRDHRPLLRQGDPREILGRLIADRYPVYAAADLAVDTADRPPEFTVDRVLDALARHL 177          
BLAST of mRNA_P-wetherbeei_contig17037.1.1 vs. uniprot
Match: UPI000419F21D (shikimate kinase n=1 Tax=Niveispirillum irakense TaxID=34011 RepID=UPI000419F21D)

HSP 1 Score: 230 bits (586), Expect = 2.370e-74
Identity = 116/175 (66.29%), Postives = 140/175 (80.00%), Query Frame = 1
Query:    1 PVDRSIVMVGLMGAGKTAIGKRLAARLALPFVDTDKEIEQAAGCAIPEIFARYGEPAFRDGERRVIARLLAGPRCVLATGGGAFMDPETRAAVKAAGLSVWLKADLDTLVRRTARRTNRPLLNRGNPRDVLANLMDARYPVYAEADIHVQSLESPPDETTSRVVDALSRHFETAA 525
            P+ +++V++GLMGAGKT+IGKRLAARL LPFVD D EIE+AAGC I EIF R+GE  FRDGERRVIARLL  P  VL+TGGGAFMD ETR  ++  GLS+WL+ADLD LV RTARR +RPLL +G+PR+VL  LMDARYPVYAEAD+ V S +SPP+ TT RV++ L +H    A
Sbjct:    9 PLTKTLVLIGLMGAGKTSIGKRLAARLGLPFVDADNEIERAAGCTIQEIFDRFGEAGFRDGERRVIARLLEQPVHVLSTGGGAFMDAETRGLIRERGLSLWLRADLDLLVHRTARRDHRPLLRQGDPREVLQRLMDARYPVYAEADLVVDSDDSPPEVTTERVLETLRQHLAVPA 183          
BLAST of mRNA_P-wetherbeei_contig17037.1.1 vs. uniprot
Match: UPI000E6AD39F (shikimate kinase n=1 Tax=Indioceanicola profundi TaxID=2220096 RepID=UPI000E6AD39F)

HSP 1 Score: 228 bits (582), Expect = 1.430e-73
Identity = 116/170 (68.24%), Postives = 138/170 (81.18%), Query Frame = 1
Query:    4 VDRSIVMVGLMGAGKTAIGKRLAARLALPFVDTDKEIEQAAGCAIPEIFARYGEPAFRDGERRVIARLLAGPRCVLATGGGAFMDPETRAAVKAAGLSVWLKADLDTLVRRTARRTNRPLLNRGNPRDVLANLMDARYPVYAEADIHVQSLESPPDETTSRVVDALSRHF 513
            + R+IV+VGLMGAGKT+IG+RLA RL LPFVD D EIE AAGC IPEIF R+GE  FRDGER+VIARLL GP  VL+TGGGAFMD ETRA ++  GLSVWL+A+LD LV+RTARR +RPLL  G+PR++L  LM+ RYPVYAEAD+ V S +SP +ETT RVV+AL  H 
Sbjct:   13 IPRTIVLVGLMGAGKTSIGRRLATRLGLPFVDADHEIEAAAGCTIPEIFERFGEAGFRDGERKVIARLLDGPVHVLSTGGGAFMDQETRALIREKGLSVWLRAELDLLVQRTARRDHRPLLRSGDPREILRGLMEKRYPVYAEADLTVDSDDSPLEETTDRVVEALHLHL 182          
BLAST of mRNA_P-wetherbeei_contig17037.1.1 vs. uniprot
Match: B6IUW9_RHOCS (Shikimate kinase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) TaxID=414684 RepID=B6IUW9_RHOCS)

HSP 1 Score: 228 bits (580), Expect = 2.880e-73
Identity = 120/172 (69.77%), Postives = 134/172 (77.91%), Query Frame = 1
Query:   10 RSIVMVGLMGAGKTAIGKRLAARLALPFVDTDKEIEQAAGCAIPEIFARYGEPAFRDGERRVIARLLAGPRCVLATGGGAFMDPETRAAVKAAGLSVWLKADLDTLVRRTARRTNRPLLNRGNPRDVLANLMDARYPVYAEADIHVQSLESPPDETTSRVVDALSRHFETAA 525
            R++V+VGLMGAGKT+IGKRLAA+L LPFVD D EIE AAGC I EIF R+GE  FRDGERRVIARLL G   VL+TGGGAFM PETRA ++  GLSVWL+A LD LV RT RR NRPLL +GNPRD+LA LM  RYPVYAEADI V S E PP+ET  RV+ AL  H   AA
Sbjct:   11 RTLVLVGLMGAGKTSIGKRLAAKLHLPFVDADHEIESAAGCTIQEIFDRFGEAQFRDGERRVIARLLEGQVRVLSTGGGAFMHPETRALIRERGLSVWLRAPLDLLVARTGRRDNRPLLKQGNPRDILAALMAQRYPVYAEADITVDSDERPPEETAERVLAALRHHLAAAA 182          
BLAST of mRNA_P-wetherbeei_contig17037.1.1 vs. uniprot
Match: A0A858R9D7_9PROT (Shikimate kinase n=1 Tax=Rhodospirillaceae bacterium B3 TaxID=2728875 RepID=A0A858R9D7_9PROT)

HSP 1 Score: 227 bits (579), Expect = 3.470e-73
Identity = 118/168 (70.24%), Postives = 136/168 (80.95%), Query Frame = 1
Query:   10 RSIVMVGLMGAGKTAIGKRLAARLALPFVDTDKEIEQAAGCAIPEIFARYGEPAFRDGERRVIARLLAGPRCVLATGGGAFMDPETRAAVKAAGLSVWLKADLDTLVRRTARRTNRPLLNRGNPRDVLANLMDARYPVYAEADIHVQSLESPPDETTSRVVDALSRHF 513
            R++V++GLMGAGKT+IGKRLA RL LPFVD D EIE+AAGC I EIF RYGE  FRDGERRVIARLL  P  VL+TGGGAFMDP TRA ++  GLSVWL+ADLD LV RTARR +RPLL +G+PR+VL +LM+ RYPVYAEAD+ V S +SPPD TT RVV AL  H 
Sbjct:   16 RTVVLIGLMGAGKTSIGKRLATRLHLPFVDADHEIERAAGCTIQEIFDRYGEAGFRDGERRVIARLLDQPVQVLSTGGGAFMDPITRALIRDKGLSVWLRADLDLLVHRTARRDHRPLLRQGDPREVLRSLMEKRYPVYAEADLTVDSDDSPPDVTTDRVVAALRDHL 183          
BLAST of mRNA_P-wetherbeei_contig17037.1.1 vs. uniprot
Match: A0A1Y6BZJ4_9HYPH (Shikimate kinase n=1 Tax=Tistlia consotensis USBA 355 TaxID=560819 RepID=A0A1Y6BZJ4_9HYPH)

HSP 1 Score: 226 bits (575), Expect = 1.230e-72
Identity = 116/171 (67.84%), Postives = 137/171 (80.12%), Query Frame = 1
Query:    1 PVDRSIVMVGLMGAGKTAIGKRLAARLALPFVDTDKEIEQAAGCAIPEIFARYGEPAFRDGERRVIARLLAG-PRCVLATGGGAFMDPETRAAVKAAGLSVWLKADLDTLVRRTARRTNRPLLNRGNPRDVLANLMDARYPVYAEADIHVQSLESPPDETTSRVVDALSRH 510
            P +RSIV+VGLMGAGK+ IG++LA RL L FVD D EIE AAGC+IPEIF R+GE AFRDGERRVIARLL    R VLATGGGAFMD  TR A+   G+SVWL+ADL+ L+RRT+RR+ RPLL RGNPR+ L+ L+  RYPVYAEADI V S++ PPDET  RV++AL RH
Sbjct:   15 PAERSIVLVGLMGAGKSCIGRKLAQRLGLRFVDADSEIEAAAGCSIPEIFERHGEAAFRDGERRVIARLLESHDRQVLATGGGAFMDAGTRRAIAGTGVSVWLRADLELLLRRTSRRSKRPLLRRGNPRETLSRLIGERYPVYAEADITVDSVDGPPDETVDRVLEALKRH 185          
BLAST of mRNA_P-wetherbeei_contig17037.1.1 vs. uniprot
Match: A0A2E8XNM5_9PROT (Shikimate kinase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XNM5_9PROT)

HSP 1 Score: 225 bits (574), Expect = 2.520e-72
Identity = 114/164 (69.51%), Postives = 136/164 (82.93%), Query Frame = 1
Query:   10 RSIVMVGLMGAGKTAIGKRLAARLALPFVDTDKEIEQAAGCAIPEIFARYGEPAFRDGERRVIARLLAGPRCVLATGGGAFMDPETRAAVKAAGLSVWLKADLDTLVRRTARRTNRPLLNRGNPRDVLANLMDARYPVYAEADIHVQSLESPPDETTSRVVDAL 501
            RSIVMVGLMGAGK++IG+RLA+RL LPFVD D EIE AAGC I E F R+GE AFRDGERRVIARLL GPR VLATGGGAFMD +TR A+  +G+SVWL+ADL+TLVRRT+RR++RPLLN  +P + L NLM+ RYP+Y +ADI V+S + PPD+T  RVV AL
Sbjct:   25 RSIVMVGLMGAGKSSIGRRLASRLDLPFVDADSEIEAAAGCTIAEFFERHGEAAFRDGERRVIARLLDGPRKVLATGGGAFMDEDTREAIGRSGISVWLRADLETLVRRTSRRSDRPLLNNDDPAETLKNLMETRYPIYEQADIDVESDDGPPDQTVDRVVAAL 188          
BLAST of mRNA_P-wetherbeei_contig17037.1.1 vs. uniprot
Match: UPI001D048595 (shikimate kinase n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI001D048595)

HSP 1 Score: 225 bits (573), Expect = 4.210e-72
Identity = 112/176 (63.64%), Postives = 139/176 (78.98%), Query Frame = 1
Query:    4 VDRSIVMVGLMGAGKTAIGKRLAARLALPFVDTDKEIEQAAGCAIPEIFARYGEPAFRDGERRVIARLLAGPRCVLATGGGAFMDPETRAAVKAAGLSVWLKADLDTLVRRTARRTNRPLLNRGNPRDVLANLMDARYPVYAEADIHVQSLESPPDETTSRVVDALSRHFETAARA 531
            V R+I +VGLMGAGK+ IG+ LAA L LPFVD DKEIE AAGC+I +IFA +GE AFRDGERRVIARLL  P+ VLATGGGAF+DPETR  ++    SVWL+AD+D L+RRT+RR NRPLL RG+PR +L +L++ RYPVYAEAD+ V S++ PP+ T +RV+  L RHFE +  A
Sbjct:   19 VPRTIALVGLMGAGKSCIGRLLAASLDLPFVDADKEIEAAAGCSIEDIFAAHGEEAFRDGERRVIARLLDEPKMVLATGGGAFLDPETRQLIRERATSVWLRADVDLLLRRTSRRNNRPLLKRGDPRQILNDLIEQRYPVYAEADVVVDSVDGPPETTLARVIKGLRRHFEESGAA 194          
BLAST of mRNA_P-wetherbeei_contig17037.1.1 vs. uniprot
Match: A0A7C9UXJ0_9PROT (Shikimate kinase n=1 Tax=Magnetospirillum aberrantis SpK TaxID=908842 RepID=A0A7C9UXJ0_9PROT)

HSP 1 Score: 224 bits (571), Expect = 4.540e-72
Identity = 107/169 (63.31%), Postives = 137/169 (81.07%), Query Frame = 1
Query:   10 RSIVMVGLMGAGKTAIGKRLAARLALPFVDTDKEIEQAAGCAIPEIFARYGEPAFRDGERRVIARLLAGPRCVLATGGGAFMDPETRAAVKAAGLSVWLKADLDTLVRRTARRTNRPLLNRGNPRDVLANLMDARYPVYAEADIHVQSLESPPDETTSRVVDALSRHFE 516
            R IV+VGLMGAGK+ +G+RLAARL +PFVD D E E AAGC+I + FARYGEPAFR+GER+VIARL+ GP CVLATGGGAF DPETR  +K   +SVW++ADLD LV+RT+ R +RPLL  G+PR++L+ LMDARYP+YA+ADI V + + PP+ T ++V+D L+R  E
Sbjct:   15 RPIVLVGLMGAGKSCVGRRLAARLGIPFVDADSEFEAAAGCSIADFFARYGEPAFREGERKVIARLMEGPLCVLATGGGAFCDPETRDRIKQGAMSVWIRADLDLLVKRTSGRDHRPLLKTGDPREILSRLMDARYPLYAQADIIVDTTDEPPEVTVAKVLDELARTLE 183          
BLAST of mRNA_P-wetherbeei_contig17037.1.1 vs. uniprot
Match: A0A239G622_9PROT (Shikimate kinase n=2 Tax=Azospirillaceae TaxID=2829815 RepID=A0A239G622_9PROT)

HSP 1 Score: 224 bits (572), Expect = 4.750e-72
Identity = 116/171 (67.84%), Postives = 138/171 (80.70%), Query Frame = 1
Query:    4 VDRSIVMVGLMGAGKTAIGKRLAARLALPFVDTDKEIEQAAGCAIPEIFARYGEPAFRDGERRVIARLLAGPRC-VLATGGGAFMDPETRAAVKAAGLSVWLKADLDTLVRRTARRTNRPLLNRGNPRDVLANLMDARYPVYAEADIHVQSLESPPDETTSRVVDALSRHF 513
            + ++IV++GLMGAGKT+IGKRLAARL LPFVD D EIE+AAGC I EIF R+GE  FRDGERRVIARLL  P   VL+TGGGAFMD +TRA ++  GLSVWL+ADLD LV+RTARR +RPLL +G PR+VL  LM+ RYPVYAEAD+ V S +SPPD+TT RV+ AL  H 
Sbjct:   10 IPKTIVLIGLMGAGKTSIGKRLAARLGLPFVDADHEIERAAGCTIQEIFDRFGEAGFRDGERRVIARLLEQPPVQVLSTGGGAFMDAQTRAMIRDHGLSVWLRADLDLLVQRTARRDHRPLLRQGEPREVLGRLMEIRYPVYAEADLTVDSDDSPPDQTTERVLAALRAHL 180          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17037.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A8QEA8_9PROT1.080e-7566.47Shikimate kinase n=1 Tax=Telmatospirillum sp. TaxI... [more]
UPI000419F21D2.370e-7466.29shikimate kinase n=1 Tax=Niveispirillum irakense T... [more]
UPI000E6AD39F1.430e-7368.24shikimate kinase n=1 Tax=Indioceanicola profundi T... [more]
B6IUW9_RHOCS2.880e-7369.77Shikimate kinase n=1 Tax=Rhodospirillum centenum (... [more]
A0A858R9D7_9PROT3.470e-7370.24Shikimate kinase n=1 Tax=Rhodospirillaceae bacteri... [more]
A0A1Y6BZJ4_9HYPH1.230e-7267.84Shikimate kinase n=1 Tax=Tistlia consotensis USBA ... [more]
A0A2E8XNM5_9PROT2.520e-7269.51Shikimate kinase n=1 Tax=Alphaproteobacteria bacte... [more]
UPI001D0485954.210e-7263.64shikimate kinase n=1 Tax=Pelagibius sp. NBU2595 Ta... [more]
A0A7C9UXJ0_9PROT4.540e-7263.31Shikimate kinase n=1 Tax=Magnetospirillum aberrant... [more]
A0A239G622_9PROT4.750e-7267.84Shikimate kinase n=2 Tax=Azospirillaceae TaxID=282... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17037contigP-wetherbeei_contig17037:576..1109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog414684.RC1_2676
Preferred namearoK
PFAMsSKI
Model size534
Max annot lvl204441|Rhodospirillales
KEGG rclassRC00002,RC00078
KEGG koko:K00891
KEGG ReactionR02412
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
Hectar predicted targeting categorymitochondrion
Exons1
Evalue3.41e-72
EggNOG OGsCOG0703@1|root,COG0703@2|Bacteria,1MUFJ@1224|Proteobacteria,2U76C@28211|Alphaproteobacteria,2JS5E@204441|Rhodospirillales
EC2.7.1.71
DescriptionCatalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
Cds size513
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186105.850255-CDS-P-wetherbeei_contig17037:575..10881683186105.850255-CDS-P-wetherbeei_contig17037:575..1088Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17037 576..1088 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186105.8596315-UTR-P-wetherbeei_contig17037:1088..11091683186105.8596315-UTR-P-wetherbeei_contig17037:1088..1109Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17037 1089..1109 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17037.1.1prot_P-wetherbeei_contig17037.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17037 576..1088 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17037.1.1

>prot_P-wetherbeei_contig17037.1.1 ID=prot_P-wetherbeei_contig17037.1.1|Name=mRNA_P-wetherbeei_contig17037.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
MVGLMGAGKTAIGKRLAARLALPFVDTDKEIEQAAGCAIPEIFARYGEPA
FRDGERRVIARLLAGPRCVLATGGGAFMDPETRAAVKAAGLSVWLKADLD
TLVRRTARRTNRPLLNRGNPRDVLANLMDARYPVYAEADIHVQSLESPPD
ETTSRVVDALSRHFETAARA*
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mRNA from alignment at P-wetherbeei_contig17037:576..1109-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17037.1.1 ID=mRNA_P-wetherbeei_contig17037.1.1|Name=mRNA_P-wetherbeei_contig17037.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig17037:576..1109- (Phaeothamnion wetherbeei SAG_119_79)
CCGGTCGACCGCTCGATCGTCATGGTCGGGCTGATGGGGGCCGGCAAGAC CGCGATCGGCAAGCGCCTGGCGGCCCGCCTCGCCTTGCCCTTCGTCGACA CCGACAAGGAAATCGAGCAGGCCGCCGGCTGCGCCATCCCGGAGATCTTC GCGCGTTACGGCGAACCGGCCTTCCGCGACGGCGAACGGCGCGTCATCGC GCGCCTGCTGGCCGGCCCGCGCTGCGTGCTGGCGACCGGCGGCGGGGCCT TCATGGATCCCGAGACGCGCGCGGCGGTCAAGGCGGCCGGCCTGTCGGTG TGGCTCAAGGCCGACCTCGACACGCTGGTGCGGCGCACGGCCCGGCGTAC CAACCGGCCGCTGCTCAACCGCGGCAATCCGCGCGACGTGCTCGCGAACC TGATGGACGCGCGCTATCCGGTCTATGCCGAGGCCGACATCCACGTGCAG TCGCTCGAATCGCCGCCCGACGAGACGACGTCGCGCGTCGTCGACGCGCT CAGCCGGCATTTCGAAACGGCGGCCCGGGCATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17037:576..1109-

>mRNA_P-wetherbeei_contig17037.1.1 ID=mRNA_P-wetherbeei_contig17037.1.1|Name=mRNA_P-wetherbeei_contig17037.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig17037:576..1109- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCGGGCTGATGGGGGCCGGCAAGACCGCGATCGGCAAGCGCCTGGC
GGCCCGCCTCGCCTTGCCCTTCGTCGACACCGACAAGGAAATCGAGCAGG
CCGCCGGCTGCGCCATCCCGGAGATCTTCGCGCGTTACGGCGAACCGGCC
TTCCGCGACGGCGAACGGCGCGTCATCGCGCGCCTGCTGGCCGGCCCGCG
CTGCGTGCTGGCGACCGGCGGCGGGGCCTTCATGGATCCCGAGACGCGCG
CGGCGGTCAAGGCGGCCGGCCTGTCGGTGTGGCTCAAGGCCGACCTCGAC
ACGCTGGTGCGGCGCACGGCCCGGCGTACCAACCGGCCGCTGCTCAACCG
CGGCAATCCGCGCGACGTGCTCGCGAACCTGATGGACGCGCGCTATCCGG
TCTATGCCGAGGCCGACATCCACGTGCAGTCGCTCGAATCGCCGCCCGAC
GAGACGACGTCGCGCGTCGTCGACGCGCTCAGCCGGCATTTCGAAACGGC
GGCCCGGGCATGA
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