mRNA_P-wetherbeei_contig17036.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17036.1.1
Unique NamemRNA_P-wetherbeei_contig17036.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17036.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17036contigP-wetherbeei_contig17036:343..1421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size748
Hectar predicted targeting categoryother localisation
Exons2
Cds size615
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186105.803337-UTR-P-wetherbeei_contig17036:342..3801683186105.803337-UTR-P-wetherbeei_contig17036:342..380Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17036 343..380 +
1683186105.826438-UTR-P-wetherbeei_contig17036:1326..14211683186105.826438-UTR-P-wetherbeei_contig17036:1326..1421Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17036 1327..1421 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186105.8113532-CDS-P-wetherbeei_contig17036:380..7661683186105.8113532-CDS-P-wetherbeei_contig17036:380..766Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17036 381..766 +
1683186105.8189597-CDS-P-wetherbeei_contig17036:1097..13261683186105.8189597-CDS-P-wetherbeei_contig17036:1097..1326Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17036 1098..1326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17036.1.1prot_P-wetherbeei_contig17036.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17036 381..1326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17036.1.1

>prot_P-wetherbeei_contig17036.1.1 ID=prot_P-wetherbeei_contig17036.1.1|Name=mRNA_P-wetherbeei_contig17036.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=205bp
MLISSATGWWLPTIHTNGMTALAIGVGDGGAGGIDGCDGGGPRRRRRRRH
NHGGDGWRQTTWNAGHTLATGFRGARAPTLRKLREAYWGDAAGRKARLQV
LGVQEMAVLRRGTHVSTLPPCPLIDRELWFMRREARKAQEKDDEQLARKL
NTEEAEGAHALITCGCCCNDVSCAFRSRSPRGAACFSSCAVRALGAFVGC
HGSV*
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mRNA from alignment at P-wetherbeei_contig17036:343..1421+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17036.1.1 ID=mRNA_P-wetherbeei_contig17036.1.1|Name=mRNA_P-wetherbeei_contig17036.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1079bp|location=Sequence derived from alignment at P-wetherbeei_contig17036:343..1421+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCGCATCCAAATATCGCGCAACGCGGATGTCTTGCGATGCTCATTTCA
TCCGCGACCGGATGGTGGCTACCAACAATACACACAAATGGTATGACGGC
TCTGGCTATTGGTGTCGGCGACGGCGGCGCCGGCGGCATCGACGGCTGCG
ACGGCGGCGGGCCGCGGCGACGACGACGACGGCGCCATAATCATGGCGGG
GATGGATGGCGGCAAACGACATGGAACGCGGGACACACCTTGGCTACGGG
CTTTCGGGGCGCCAGGGCTCCGACGCTGCGGAAGCTGCGGGAGGCGTACT
GGGGCGACGCGGCGGGGCGGAAGGCGCGGCTGCAGGTGCTCGGGGTGCAG
GAAATGGCGGTGCTGCGGCGGGGCACCCACGTGTCGACGCTGCCGCCCTG
CCCCCTCATTGACCGCGAGCTCTGGTGAGACAAAAGAGCTTTGAAAACTT
TGGAGTCTTCCTTGTGCTTTGAAGATTCACAGCCGCCTGCGTTTGCGCCT
TGGAGGTGGTAAAGCGCGTCATGCCTTCAATGCTCTTTCTCTTGAAAGTG
AGTCAAGCTGACGGAACCGAATCGCGGCTTTCGTCGCCCTCTCTCTTCCC
ACTTCTTTCCCTTTCCGGACCTGTCCTGGGCGCCTTCTTTTGGTTTGGCT
GCGGGTGCTGGCGGCCGGCTATCTCGTTATGGTGGCAATGGCGGCGGCGG
CATTTGCGGCAATGACGACGGTATGGTCGGGTCGGGTCGGGTTGGGCCTG
CGCAGGTTCATGCGGCGGGAGGCCCGCAAGGCGCAGGAGAAGGACGACGA
GCAGCTCGCTCGCAAGCTGAACACAGAGGAGGCCGAAGGCGCCCATGCAT
TAATCACGTGCGGCTGCTGCTGCAACGACGTAAGTTGTGCTTTTCGTTCT
CGTTCTCCGCGCGGTGCCGCGTGCTTCTCCTCGTGTGCCGTCCGTGCTTT
GGGGGCATTTGTTGGTTGCCATGGCAGTGTATGAATGGCTATTCTCCTAC
TTTCGTCACTTTCCTTTGCGTCTGCGTTTCTTCTCTGCGGCGACCATCGT
TCGGCAACGCCTCCTCCGAAACTGCAATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17036:343..1421+

>mRNA_P-wetherbeei_contig17036.1.1 ID=mRNA_P-wetherbeei_contig17036.1.1|Name=mRNA_P-wetherbeei_contig17036.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=615bp|location=Sequence derived from alignment at P-wetherbeei_contig17036:343..1421+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCATTTCATCCGCGACCGGATGGTGGCTACCAACAATACACACAAA
TGGTATGACGGCTCTGGCTATTGGTGTCGGCGACGGCGGCGCCGGCGGCA
TCGACGGCTGCGACGGCGGCGGGCCGCGGCGACGACGACGACGGCGCCAT
AATCATGGCGGGGATGGATGGCGGCAAACGACATGGAACGCGGGACACAC
CTTGGCTACGGGCTTTCGGGGCGCCAGGGCTCCGACGCTGCGGAAGCTGC
GGGAGGCGTACTGGGGCGACGCGGCGGGGCGGAAGGCGCGGCTGCAGGTG
CTCGGGGTGCAGGAAATGGCGGTGCTGCGGCGGGGCACCCACGTGTCGAC
GCTGCCGCCCTGCCCCCTCATTGACCGCGAGCTCTGGTTCATGCGGCGGG
AGGCCCGCAAGGCGCAGGAGAAGGACGACGAGCAGCTCGCTCGCAAGCTG
AACACAGAGGAGGCCGAAGGCGCCCATGCATTAATCACGTGCGGCTGCTG
CTGCAACGACGTAAGTTGTGCTTTTCGTTCTCGTTCTCCGCGCGGTGCCG
CGTGCTTCTCCTCGTGTGCCGTCCGTGCTTTGGGGGCATTTGTTGGTTGC
CATGGCAGTGTATGA
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