mRNA_P-wetherbeei_contig17035.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17035.1.1
Unique NamemRNA_P-wetherbeei_contig17035.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17035.1.1 vs. uniprot
Match: D7FZF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF4_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 3.160e-52
Identity = 91/175 (52.00%), Postives = 129/175 (73.71%), Query Frame = 1
Query:    1 LVLFDWDDSLISSSWITSQKLLTVADSFEGLPEDAQAELLKLEDSVYACLTLARKYGSLIIITNAEDGWVQLSAARFFRRLVPLLRDVPTVSARSNFEKRFPGAPLSWKAAAFAYVIHEHYCKDFR-APKMVISVGDSHEEKIALKIAAQQHDRITTKAVKLLPQPGPALLAMQL 522
            L++FDWDD++++SSWI    LL  A S++ LP + + +L +LE SV  CL  AR+ G++IIITNAE GWV+LSAARFF  ++PLL  VP +SARS FE +FPG+PL WK+AAFAY++H+H+ +  +   K V+S+GDS+EEK+A++IA+ QH  +  K+VK +  P P  LA QL
Sbjct:   73 LIVFDWDDTMLTSSWIQVNDLLQ-AGSYDELPLEVRRDLAQLERSVVKCLKNARRLGTVIIITNAESGWVELSAARFFVNVLPLLEGVPVISARSLFESQFPGSPLCWKSAAFAYMMHDHFLERPQWMQKKVVSIGDSNEEKVAMRIASGQHGTMAAKSVKFITGPDPEALACQL 246          
BLAST of mRNA_P-wetherbeei_contig17035.1.1 vs. uniprot
Match: A0A6H5KCP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP8_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 2.830e-51
Identity = 90/175 (51.43%), Postives = 128/175 (73.14%), Query Frame = 1
Query:    1 LVLFDWDDSLISSSWITSQKLLTVADSFEGLPEDAQAELLKLEDSVYACLTLARKYGSLIIITNAEDGWVQLSAARFFRRLVPLLRDVPTVSARSNFEKRFPGAPLSWKAAAFAYVIHEHYCKDFR-APKMVISVGDSHEEKIALKIAAQQHDRITTKAVKLLPQPGPALLAMQL 522
            L++FDWDD++++SSWI    LL  A S++ LP + + +L +LE SV  C   AR+ G++IIITNAE GWV+LSAARFF  ++PLL  VP +SARS FE +FPG+PL WK+AAFAY++H+H+ +  +   K V+S+GDS+EEK+A++IA+ QH  +  K+VK +  P P  LA QL
Sbjct:  100 LIVFDWDDTMLTSSWIQVNDLLQ-AGSYDELPLEVRRDLAQLERSVAKCFKNARRLGTVIIITNAESGWVELSAARFFVNVLPLLEGVPVISARSLFESQFPGSPLCWKSAAFAYMMHDHFLERPQWMQKKVVSIGDSNEEKVAMRIASGQHGTMEAKSVKFITGPDPEALACQL 273          
BLAST of mRNA_P-wetherbeei_contig17035.1.1 vs. uniprot
Match: A0A835Z397_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z397_9STRA)

HSP 1 Score: 165 bits (417), Expect = 9.030e-47
Identity = 82/154 (53.25%), Postives = 109/154 (70.78%), Query Frame = 1
Query:    1 LVLFDWDDSLISSSWITSQKLLTVADSFEGLPEDAQAELLKLEDSVYACLTLARKYGSLIIITNAEDGWVQLSAARFFRRLVPLLRDVPTVSARSNFEKRFPGAPLSWKAAAFAYVIHEHYCKDFRAPKMVISVGDSHEEKIALKIAAQQHDRI 462
            L +FDWDD+L+ S+++   +LL V+     L      +L ++E +    L LA K G ++IITNAE GWV+LSA +++R +V LL D+P VSARS FE +FPGAPLSWKAAAFAYV+HE +  D   P++V+SVGDS EEKIAL+IAA QH  I
Sbjct:   30 LTIFDWDDTLLCSTYVQQSQLLQVS----RLSPATAEQLARVEAAAVRVLRLALKLGPVVIITNAEAGWVELSAEKYYRDVVELLSDIPVVSARSQFESQFPGAPLSWKAAAFAYVLHERFSLDVVTPRLVVSVGDSDEEKIALRIAAGQHTTI 179          
BLAST of mRNA_P-wetherbeei_contig17035.1.1 vs. uniprot
Match: A0A836CF50_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF50_9STRA)

HSP 1 Score: 154 bits (388), Expect = 1.460e-43
Identity = 80/174 (45.98%), Postives = 111/174 (63.79%), Query Frame = 1
Query:    1 LVLFDWDDSLISSSWITSQKLLTVADSFEGLPEDAQAELLKLEDSVYACLTLARKYGSLIIITNAEDGWVQLSAARFFRRLVPLLRDVPTVSARSNFEKRFPGAPLSWKAAAFAYVIHEHYCKDFRAPKMVISVGDSHEEKIALKIAAQQHDRITTKAVKLLPQPGPALLAMQL 522
            L +FDWDD+L+ SS+I   +       ++G              +    L LA+  G ++IITNAE GWV+L A R+ R +  LL D+P VSAR+ FE +FPG+P+SWKAAAFAYV+HE +      PK+V+S+GDS EE+ A++IAA QH  I++  VK LPQP P  LA++L
Sbjct:    8 LTIFDWDDTLMCSSFIQQTQ-------YKG--------------AACRALRLAQLLGQVVIITNAEHGWVELCAQRYLRGVNELLEDIPVVSARTRFEAQFPGSPVSWKAAAFAYVLHEQFSAIRNKPKLVVSIGDSEEERAAVRIAAAQHAMISSCTVKFLPQPMPRALAVEL 160          
BLAST of mRNA_P-wetherbeei_contig17035.1.1 vs. uniprot
Match: A0A7S2CXF5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CXF5_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.470e-41
Identity = 83/177 (46.89%), Postives = 115/177 (64.97%), Query Frame = 1
Query:    1 LVLFDWDDSLISSSWITSQKLLTVADSFEGLPEDAQAELLKLEDSVYACLTLARKYGSLIIITNAEDGWVQLSAARFFRRLVPLLRDVPTVSARSNFEKRFPGAPLSWKAAAFAYVIHEHYC----KDFRAPKMVISVGDSHEEKIALKIAAQQHDRITTKAVKLLPQPGPALLAMQ 519
            +++FDWDD+L++SSWI  +KLL    SF  L    Q +   LE+ V  CL  A K G+++IITNAE GWV+ SA RF  RL+PLL+ +  VSARS +E+ +PGAPL WKAAAFA+  ++ +        +A + +IS GDS+EE+ A+KIAA Q D  T K++K +  P P  L  Q
Sbjct:   62 VIVFDWDDTLMASSWIDREKLLNTP-SFGDLSAPLQEQFGALEEHVGWCLAAALKVGTVVIITNAEAGWVEYSAKRFMPRLLPLLQTMRVVSARSTYERFYPGAPLCWKAAAFAHEANQVFSGAGSDGAQAAREIISFGDSNEERTAVKIAAGQLDA-TAKSIKFVDLPNPEQLRKQ 236          
BLAST of mRNA_P-wetherbeei_contig17035.1.1 vs. uniprot
Match: A0A812JJB3_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812JJB3_9DINO)

HSP 1 Score: 126 bits (317), Expect = 5.210e-33
Identity = 72/174 (41.38%), Postives = 103/174 (59.20%), Query Frame = 1
Query:    4 VLFDWDDSLISSSWITSQKLLTVADSFEGLPEDAQAELLKLEDSVYACLTLARKYGSLIIITNAEDGWVQLSAARFFRRLVPLLRDVPTVSARSNFEKRFPGAPLSWKAAAFAYVIHEHYCKDFRA-PKMVISVGDSHEEKIALKIAAQQHDRITTKAVKLLPQPGPALLAMQL 522
            ++ D+DD+L++SSW+    L    D  E +P++AQ +L  L +S    L LA +YG +IIITNAE GWV+LSA +F   L+PLL +V  +SARS FE  +   P  WK AAF+  +   + K     PK +IS+GDS  E+ AL+     H  +  K+VKL+ +P    L  QL
Sbjct:   42 IVLDYDDTLLASSWLAQNGLRL--DGTEPVPKEAQEQLGLLAESAANLLKLAMQYGEVIIITNAETGWVELSAKKFMPSLLPLLMNVRVISARSTFESMY-AEPSQWKVAAFSQELSLAFAKSVHGTPKNIISLGDSVHERAALRKVTAGHSSVLAKSVKLVERPTIEQLKRQL 212          
BLAST of mRNA_P-wetherbeei_contig17035.1.1 vs. uniprot
Match: W7U8U2_9STRA (Protein kinase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U8U2_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.410e-31
Identity = 70/174 (40.23%), Postives = 103/174 (59.20%), Query Frame = 1
Query:    4 VLFDWDDSLISSSWITSQKLLTVADSFEGLPEDAQAELLKLEDSVYACLTLARKYGSLIIITNAEDGWVQLSAARFFRRLVPLLR-DVPTVSARSNFEKRFPGAPLSWKAAAFAYVIHEHYCKDFRAPKMVISVGDSHEEKIALKIAAQQHDRITTKAVKLLPQPGPALLAMQL 522
            V+ DWDD+L  SS++  +KL+      + LP + Q    +LE +    +T A KYG+++IITNA+ GWV+L  ++F   L+ +L   V  VSARSN+E+ FPG PL WK+AAFA+ + +         K ++S GDS EE+ A++IAA        K+VK L  P P  L  Q+
Sbjct:   84 VILDWDDTLFPSSFVDRKKLIHCR-GLDELPSELQRGFAELEKAAAGLITAATKYGTVLIITNAQTGWVELCVSKFMPGLMAVLGISVRVVSARSNYERYFPGDPLCWKSAAFAHELTQLQNSQGHPLKNLLSFGDSMEERTAVQIAAGHLQGARAKSVKFLDAPSPRELHQQI 256          
BLAST of mRNA_P-wetherbeei_contig17035.1.1 vs. uniprot
Match: A0A7R9Z9M2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z9M2_9STRA)

HSP 1 Score: 120 bits (302), Expect = 7.450e-31
Identity = 66/166 (39.76%), Postives = 96/166 (57.83%), Query Frame = 1
Query:    1 LVLFDWDDSLISSSWITSQKLLTVADSFEGLPEDAQAELLKLEDSVYACLTLARKYGSLIIITNAEDGWVQLSAARFFRRLVPLLRDVPTVSARSNFEKRFPGAPLSWKAAAFAYVIHEHY-CKDFRAPKMVISVGDSHEEKIALKIAAQQHDRITTKAVKLLPQP 495
            L++FDWDD+L+SSSW+    L    D+   +P  A  +L +LE+SV   L  A+KYG + IITNAE GWV+LSA +F   +VP+L  +  +SARS +E  +P +P  WK  AF   I++ Y        K ++S GDS  E+ A+           TK+VK + +P
Sbjct:   50 LIIFDWDDTLMSSSWLAQNGLRL--DTPAEVPAAAVKQLTQLEESVITLLNRAKKYGHVCIITNAETGWVELSAKKFMPAVVPVLDGIHVLSARSTYESMYPDSPADWKVQAFYQKIYDSYKASPADRHKNILSFGDSIHERHAIHKVTATLRAAFTKSVKFVERP 213          
BLAST of mRNA_P-wetherbeei_contig17035.1.1 vs. uniprot
Match: A0A7S0CQZ9_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CQZ9_9EUKA)

HSP 1 Score: 120 bits (302), Expect = 1.960e-30
Identity = 66/167 (39.52%), Postives = 101/167 (60.48%), Query Frame = 1
Query:    1 LVLFDWDDSLISSSWITSQKLLTVADSFEGLPEDAQAELLKLEDSVYACLTLARKYGSLI-IITNAEDGWVQLSAARFFRRLVPLLRDVPTVSARSNFEKRFPGAPLSWKAAAFAYVIHEHYCKDFRAPKMVISVGDSHEEKIALKIAAQQHDRITTKAVKLLPQPG 498
            + +FDWDD+L+ SS+++S       DS + + +D + +L +LE SV   + LA   G  + IITNAE GWV+LSA +F   +VPLL  +  +SARS +E+RFP +PL WK  AF + + + +  D +A K VIS GDSH E+  ++  A+       K++K   +P 
Sbjct:   73 VTVFDWDDTLLPSSFLSSNGYRL--DSDKAMSDDLKKQLQQLESSVVGFIELALGKGDKVYIITNAESGWVELSAQKFLPGVVPLLSRLEVISARSTYEERFPESPLQWKYYAFQHNLAKAFTNDMKA-KSVISFGDSHVERHVVRAVAKSFHNSLAKSIKFAERPS 236          
BLAST of mRNA_P-wetherbeei_contig17035.1.1 vs. uniprot
Match: A0A7S2TRH3_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TRH3_9EUKA)

HSP 1 Score: 115 bits (287), Expect = 1.390e-28
Identity = 63/167 (37.72%), Postives = 100/167 (59.88%), Query Frame = 1
Query:    1 LVLFDWDDSLISSSWITSQKLLTVADSFEGLPEDAQAELLKLEDSVYACLTLARKYGSLI-IITNAEDGWVQLSAARFFRRLVPLLRDVPTVSARSNFEKRFPGAPLSWKAAAFAYVIHEHYCKDFRAPKMVISVGDSHEEKIALKIAAQQHDRITTKAVKLLPQPG 498
            L +FDWDD+L+ S+++ S      +D  + L  + +  L  LE SV   LTLA K+G  + IIT+A++GWV+LSA +F+  + PLL+ V  +SARS +E+RFP +PL WK  AF +   + +  +   PK +IS GDS  E+  ++  ++  +    K+VK   +P 
Sbjct:   44 LTIFDWDDTLMPSTYLQSNGFTLKSD--KALSTEEEKILGLLEKSVVKFLTLALKHGDRVCIITSAQEGWVELSAKKFYPSVAPLLKHVTVISARSTYEERFPNSPLHWKYEAFRHSATKCFADNLE-PKSIISFGDSMIERHCVRAVSKLFENSLAKSVKFAERPS 207          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17035.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZF4_ECTSI3.160e-5252.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCP8_9PHAE2.830e-5151.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z397_9STRA9.030e-4753.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CF50_9STRA1.460e-4345.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2CXF5_9STRA1.470e-4146.89Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A812JJB3_9DINO5.210e-3341.38Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
W7U8U2_9STRA1.410e-3140.23Protein kinase n=3 Tax=Monodopsidaceae TaxID=42507... [more]
A0A7R9Z9M2_9STRA7.450e-3139.76Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S0CQZ9_9EUKA1.960e-3039.52Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S2TRH3_9EUKA1.390e-2837.72Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17035contigP-wetherbeei_contig17035:536..1406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FZF4
Model size522
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.17e-53
EggNOG OGs28RT2@1|root,2S5YV@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_003110.1
Cds size522
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186105.755577-CDS-P-wetherbeei_contig17035:535..6691683186105.755577-CDS-P-wetherbeei_contig17035:535..669Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17035 536..669 +
1683186105.7677279-CDS-P-wetherbeei_contig17035:836..9001683186105.7677279-CDS-P-wetherbeei_contig17035:836..900Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17035 837..900 +
1683186105.7760513-CDS-P-wetherbeei_contig17035:1082..14061683186105.7760513-CDS-P-wetherbeei_contig17035:1082..1406Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17035 1083..1406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17035.1.1prot_P-wetherbeei_contig17035.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17035 536..1406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17035.1.1

>prot_P-wetherbeei_contig17035.1.1 ID=prot_P-wetherbeei_contig17035.1.1|Name=mRNA_P-wetherbeei_contig17035.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=174bp
LVLFDWDDSLISSSWITSQKLLTVADSFEGLPEDAQAELLKLEDSVYACL
TLARKYGSLIIITNAEDGWVQLSAARFFRRLVPLLRDVPTVSARSNFEKR
FPGAPLSWKAAAFAYVIHEHYCKDFRAPKMVISVGDSHEEKIALKIAAQQ
HDRITTKAVKLLPQPGPALLAMQL
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mRNA from alignment at P-wetherbeei_contig17035:536..1406+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17035.1.1 ID=mRNA_P-wetherbeei_contig17035.1.1|Name=mRNA_P-wetherbeei_contig17035.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=871bp|location=Sequence derived from alignment at P-wetherbeei_contig17035:536..1406+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGTGCTCTTCGATTGGGACGACAGCTTGATATCGTCGAGTTGGATTAC GAGCCAGAAGCTGCTCACCGTCGCGGACAGCTTCGAGGGCCTGCCGGAGG ACGCCCAGGCTGAACTACTCAAGTTGGAGGACAGGTGCGTGCAAGAACCG GCCTACATCCAACAATTGCCGAAACATTCCCACATTGATCTTTCGCACCT TGCCCATTCCGACGCCAGAGCTGCTGTTGTGATTCTTACGGTTCCCAGCG CCACTCCTAATCCCATCCATTTGACACCCCTGCCATGACCGACCCTTGCA GTGTCTACGCCTGCCTCACGCTCGCACGCAAGTACGGCTCCCTCATCATC ATCACCAACGCCGAGGTGCGCTCTTTGGATGTTCGCGATTTCGCGCCTTC GCGCTACGTCGCTGCCCCTTTTCCACGGTCAGAGAAAGTCCCGTCGTACC CTGACCCCACCGGTTGTCACTTTGCTTCCTCGTCTCAACGTTCCACGCCT CGCCCGCCTTCGCCGCCCGCATATGAATGTCTCCCATTGCTCCGCAGGAC GGCTGGGTGCAGCTGTCGGCGGCGCGCTTCTTCCGTCGGCTGGTGCCGTT GCTGCGCGACGTCCCGACGGTCAGCGCCCGGTCTAACTTCGAGAAGCGCT TCCCGGGGGCGCCGCTCTCGTGGAAGGCGGCGGCGTTCGCCTACGTGATC CACGAGCACTACTGTAAGGACTTCCGGGCGCCCAAGATGGTCATCAGCGT GGGGGACTCACACGAGGAGAAGATTGCCCTCAAGATTGCAGCGCAGCAGC ACGACCGCATCACCACAAAGGCTGTCAAGCTCCTGCCGCAGCCGGGGCCG GCTCTGCTTGCCATGCAGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17035:536..1406+

>mRNA_P-wetherbeei_contig17035.1.1 ID=mRNA_P-wetherbeei_contig17035.1.1|Name=mRNA_P-wetherbeei_contig17035.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig17035:536..1406+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGTGCTCTTCGATTGGGACGACAGCTTGATATCGTCGAGTTGGATTAC
GAGCCAGAAGCTGCTCACCGTCGCGGACAGCTTCGAGGGCCTGCCGGAGG
ACGCCCAGGCTGAACTACTCAAGTTGGAGGACAGTGTCTACGCCTGCCTC
ACGCTCGCACGCAAGTACGGCTCCCTCATCATCATCACCAACGCCGAGGA
CGGCTGGGTGCAGCTGTCGGCGGCGCGCTTCTTCCGTCGGCTGGTGCCGT
TGCTGCGCGACGTCCCGACGGTCAGCGCCCGGTCTAACTTCGAGAAGCGC
TTCCCGGGGGCGCCGCTCTCGTGGAAGGCGGCGGCGTTCGCCTACGTGAT
CCACGAGCACTACTGTAAGGACTTCCGGGCGCCCAAGATGGTCATCAGCG
TGGGGGACTCACACGAGGAGAAGATTGCCCTCAAGATTGCAGCGCAGCAG
CACGACCGCATCACCACAAAGGCTGTCAAGCTCCTGCCGCAGCCGGGGCC
GGCTCTGCTTGCCATGCAGCTG
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