mRNA_P-wetherbeei_contig17029.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17029.2.1
Unique NamemRNA_P-wetherbeei_contig17029.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17029.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17029contigP-wetherbeei_contig17029:494..1396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size786
Hectar predicted targeting categoryother localisation
Exons2
Cds size786
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186105.362646-CDS-P-wetherbeei_contig17029:493..6271683186105.362646-CDS-P-wetherbeei_contig17029:493..627Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17029 494..627 +
1683186105.375436-CDS-P-wetherbeei_contig17029:744..13961683186105.375436-CDS-P-wetherbeei_contig17029:744..1396Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17029 745..1396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17029.2.1prot_P-wetherbeei_contig17029.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17029 494..1396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17029.2.1

>prot_P-wetherbeei_contig17029.2.1 ID=prot_P-wetherbeei_contig17029.2.1|Name=mRNA_P-wetherbeei_contig17029.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=262bp
GTERDDELYGLGGNDTLFGSLGADRMDGGTGTDTVSYFSYTSPALQFDDV
IKGNSLDNVMTGSFGSDVLEGRDGDDVISGDAIVVADIDATEFDDGDDND
SDNDIIDGGGGNDTLIGDGGNDTLIGGTGNDTLFGGKGDDLLIGGVGTNT
LDGGTGFDTASYADIAHGVHVFFNDNINKFITLGVNGSSTAEAVVRVERF
VGTNFNDLMEGSGSKDTFEGGGGADTLFGFDGADTLNGGAGDDLLVGGFG
GDTLIGGDGVDT
back to top

mRNA from alignment at P-wetherbeei_contig17029:494..1396+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17029.2.1 ID=mRNA_P-wetherbeei_contig17029.2.1|Name=mRNA_P-wetherbeei_contig17029.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=903bp|location=Sequence derived from alignment at P-wetherbeei_contig17029:494..1396+ (Phaeothamnion wetherbeei SAG_119_79)
GGGACGGAGAGGGATGACGAACTCTACGGCTTGGGAGGCAATGATACTCT
GTTCGGAAGTCTCGGGGCGGATCGCATGGACGGCGGAACAGGGACCGATA
CGGTGTCCTACTTCTCATATACCAGCCCCGCTCTGTATGGAGTGAAGTTC
CATTTTTCGGAAGCGGTCGATGTCGATCTGCAGCGCGCCGTGCAGCATGG
CGGATTTGCCGAAGGCGATACCCTCATCTCCATCGAGAATGTCGGCGGCA
GCCAGTTCGACGACGTGATCAAGGGCAACAGTCTCGACAATGTGATGACC
GGCAGCTTTGGTAGTGACGTCCTTGAGGGCCGGGACGGTGATGACGTGAT
TTCCGGCGACGCGATCGTTGTCGCCGACATCGACGCGACCGAGTTTGACG
ATGGTGATGACAATGACAGTGACAACGACATCATCGATGGCGGCGGAGGC
AATGACACGCTGATAGGCGATGGCGGCAACGACACGCTGATCGGTGGCAC
TGGCAATGACACGCTGTTTGGCGGCAAGGGCGACGACTTGCTGATCGGCG
GCGTCGGCACCAACACGCTGGATGGCGGGACGGGTTTCGACACGGCGAGC
TACGCCGACATCGCGCATGGCGTCCACGTATTCTTCAACGACAACATCAA
CAAGTTCATTACGCTCGGCGTGAACGGCAGTTCCACCGCGGAGGCGGTCG
TAAGGGTCGAGCGTTTCGTCGGGACTAATTTCAATGACCTGATGGAGGGT
TCGGGATCCAAAGATACCTTCGAGGGCGGCGGCGGAGCAGACACTCTTTT
CGGATTTGACGGCGCTGATACGCTGAACGGCGGCGCCGGGGATGATCTGC
TTGTCGGCGGATTTGGCGGTGATACGCTGATCGGCGGCGACGGCGTCGAC
ACC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig17029:494..1396+

>mRNA_P-wetherbeei_contig17029.2.1 ID=mRNA_P-wetherbeei_contig17029.2.1|Name=mRNA_P-wetherbeei_contig17029.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=786bp|location=Sequence derived from alignment at P-wetherbeei_contig17029:494..1396+ (Phaeothamnion wetherbeei SAG_119_79)
GGGACGGAGAGGGATGACGAACTCTACGGCTTGGGAGGCAATGATACTCT
GTTCGGAAGTCTCGGGGCGGATCGCATGGACGGCGGAACAGGGACCGATA
CGGTGTCCTACTTCTCATATACCAGCCCCGCTCTCCAGTTCGACGACGTG
ATCAAGGGCAACAGTCTCGACAATGTGATGACCGGCAGCTTTGGTAGTGA
CGTCCTTGAGGGCCGGGACGGTGATGACGTGATTTCCGGCGACGCGATCG
TTGTCGCCGACATCGACGCGACCGAGTTTGACGATGGTGATGACAATGAC
AGTGACAACGACATCATCGATGGCGGCGGAGGCAATGACACGCTGATAGG
CGATGGCGGCAACGACACGCTGATCGGTGGCACTGGCAATGACACGCTGT
TTGGCGGCAAGGGCGACGACTTGCTGATCGGCGGCGTCGGCACCAACACG
CTGGATGGCGGGACGGGTTTCGACACGGCGAGCTACGCCGACATCGCGCA
TGGCGTCCACGTATTCTTCAACGACAACATCAACAAGTTCATTACGCTCG
GCGTGAACGGCAGTTCCACCGCGGAGGCGGTCGTAAGGGTCGAGCGTTTC
GTCGGGACTAATTTCAATGACCTGATGGAGGGTTCGGGATCCAAAGATAC
CTTCGAGGGCGGCGGCGGAGCAGACACTCTTTTCGGATTTGACGGCGCTG
ATACGCTGAACGGCGGCGCCGGGGATGATCTGCTTGTCGGCGGATTTGGC
GGTGATACGCTGATCGGCGGCGACGGCGTCGACACC
back to top