mRNA_P-wetherbeei_contig17022.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17022.1.1
Unique NamemRNA_P-wetherbeei_contig17022.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17022.1.1 vs. uniprot
Match: UPI0019873833 (TetR/AcrR family transcriptional regulator n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=UPI0019873833)

HSP 1 Score: 155 bits (391), Expect = 8.320e-45
Identity = 88/174 (50.57%), Postives = 111/174 (63.79%), Query Frame = 1
Query:    1 VRKTRQDWVDAGLSLLREEGQQALTIERLTVDLGVSKGSFYHHFGGLPGYRQALLETWETELTLRPMEEAARESNPTDRRRKLGQAVRKLDNRLDLAVRAWGLRDPFVADFVARVDERRLSYLTEL-QAGLGRARPEFLATLEYAAFIG---LQHLRLKERSSLYEQALQKALG 510
             R TR+DW+DAGL+LLRE G+ ALT++RL   LG +KGSFYHHF G+P   +ALLE WE   T  P+  A+RE N   RR+ L  +V++LD  LDL VRAW LRD    D VARVD RR+ YL  L    +  AR   +ATLEYAAF+G   L  +R +   +  E  L +ALG
Sbjct:    2 ARTTREDWIDAGLTLLRESGEHALTLDRLCAALGRTKGSFYHHFAGMPELSRALLEAWEQRHTEVPIATASREDNIGKRRKLLDASVKQLDWALDLTVRAWALRDASARDTVARVDARRIDYLESLLPRRVSAARRRAIATLEYAAFLGAMQLDPMRTRGDEARSEALLYEALG 175          
BLAST of mRNA_P-wetherbeei_contig17022.1.1 vs. uniprot
Match: A0A0K1PPT2_9DELT (Transcriptional regulator, TetR family n=1 Tax=Labilithrix luteola TaxID=1391654 RepID=A0A0K1PPT2_9DELT)

HSP 1 Score: 152 bits (384), Expect = 1.210e-43
Identity = 83/174 (47.70%), Postives = 113/174 (64.94%), Query Frame = 1
Query:    4 RKTRQDWVDAGLSLLREEGQQALTIERLTVDLGVSKGSFYHHFGGLPGYRQALLETWETELTLRPMEEAARESNPTDRRRKLGQAVRKLDNRLDLAVRAWGLRDPFVADFVARVDERRLSYLTELQAGLGRARPEFLATLEYAAFIGLQHLRL---KERSSLYEQALQKALGLL 516
            R +R+DW  AGLS+LR++G QALTIER+ + L  +KGSFYHHF  L  Y  ALL+ WE +LT +P+  ++RE++   +  +L   V  LD+RLD AVRAW L D    + V+RVDERRL Y+ +L        P  LA +EYAAF+GLQHL     + R+    +AL++AL LL
Sbjct:   11 RVSRKDWCLAGLSVLRDQGYQALTIERICLLLEKTKGSFYHHFVDLEAYLAALLQQWEADLTEQPIAVSSREASLPGKAARLDDVVLGLDHRLDRAVRAWALHDARAREAVSRVDERRLEYVAQLHRAAKHRNPRVLAEIEYAAFVGLQHLDFMDDRRRAEKVNEALREALALL 184          
BLAST of mRNA_P-wetherbeei_contig17022.1.1 vs. uniprot
Match: A0A150PLM3_SORCE (TetR family transcriptional regulator n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150PLM3_SORCE)

HSP 1 Score: 151 bits (382), Expect = 2.990e-43
Identity = 91/178 (51.12%), Postives = 108/178 (60.67%), Query Frame = 1
Query:    1 VRKTRQDWVDAGLSLLREEGQQALTIERLTVDLGVSKGSFYHHFGGLPGYRQALLETWETELTLRPMEEAARESNPTDRRRKLGQAVRKLDNRLDLAVRAWGLRDPFVADFVARVDERRLSYLTELQAGLGRARPE--FLATLEYAAFIGLQHL---RLKERSSLYEQALQKALGLLA 519
             R +R+DW+D GL LLR+ G+ ALTIE L V LG +KGSFYHHF  +  +  ALL  WE   T  P+  A     P  RR++L + VR LD RLDLAVRAW LRD   A  + RVD RR+ YL  L A  GRAR     LA LEYAAFIG Q L      E +   E+AL +AL LLA
Sbjct:    2 ARTSREDWLDQGLELLRDGGEGALTIEGLCVRLGRTKGSFYHHFQDVAAFLDALLARWEERSTSAPIHHAEAGGAPDGRRQRLSEVVRSLDGRLDLAVRAWALRDERAAAVLRRVDARRVDYLASLHACQGRARDAATLLARLEYAAFIGAQVLFPDLSAESARSLERALDRALELLA 179          
BLAST of mRNA_P-wetherbeei_contig17022.1.1 vs. uniprot
Match: A0A2L0EZ73_SORCE (TetR family transcriptional regulator n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A2L0EZ73_SORCE)

HSP 1 Score: 149 bits (376), Expect = 2.480e-42
Identity = 88/182 (48.35%), Postives = 110/182 (60.44%), Query Frame = 1
Query:    1 VRKTRQDWVDAGLSLLREEGQQALTIERLTVDLGVSKGSFYHHFGGLPGYRQALLETWETELTLRPMEEAARESN-PTDRRRKLGQAVRKLDNRLDLAVRAWGLRDPFVADFVARVDERRLSYLTELQAGLGRARPE--FLATLEYAAFIGLQHL---RLKERSSLYEQALQKALGLLAEPQ 528
             R +R DW+D GL+LLR+ G+ ALTI+ L   LG +KGSFYHHF  + G+ +ALL  WE   T  P+  A      P  RR++LG  VR LD RL+LAVRAW +RD   A  + RVD RR+ YL  L    GR R     LA LEYAAF+G Q L    + E +   E AL++AL LLAE Q
Sbjct:    2 ARTSRNDWLDQGLALLRDGGEGALTIDGLCERLGRTKGSFYHHFEDIAGFLEALLARWEERQTSAPIHHADEGGGAPEQRRQRLGAVVRSLDGRLELAVRAWAIRDERAAAVLRRVDARRIDYLASLHVSEGRTRDAALLLARLEYAAFVGAQQLFSDLMDESARSLEIALERALELLAEDQ 183          
BLAST of mRNA_P-wetherbeei_contig17022.1.1 vs. uniprot
Match: A0A8H9L9U7_9DEIO (TetR family transcriptional regulator n=2 Tax=Deinococcus TaxID=1298 RepID=A0A8H9L9U7_9DEIO)

HSP 1 Score: 147 bits (371), Expect = 6.530e-42
Identity = 82/171 (47.95%), Postives = 108/171 (63.16%), Query Frame = 1
Query:    1 VRKTRQDWVDAGLSLLREEGQQALTIERLTVDLGVSKGSFYHHFGGLPGYRQALLETWETELTLRPMEEAARESNPTDRRRKLGQAVRKLDNRLDLAVRAWGLRDPFVADFVARVDERRLSYLTELQAGLGRARPEFLATLEYAAFIGLQHLRLKERSSLYEQALQKALGL 513
            +R+TR DW+ AGL+LLR+EG+ +LTI+RL   +G+SKGSFYHHF     YR ALL+ WE   T  P+E+ A  ++P    R L   +  LD+ L+LAVRAW +R+  V   + RVDERRL++L ++   LG A    LA LEYAAF+GLQ L    RS L     Q   GL
Sbjct:    1 MRRTRTDWLSAGLALLRDEGEHSLTIDRLCRAIGLSKGSFYHHFQNADAYRAALLDRWEQTQTDAPIEQTAGTADPL---RALQTVIEPLDHPLELAVRAWAVRNAEVRAALHRVDERRLAHLKQIHDQLGHAHAAELAALEYAAFVGLQTLGWTNRSDLARLHAQALAGL 168          
BLAST of mRNA_P-wetherbeei_contig17022.1.1 vs. uniprot
Match: A0A150PMH5_SORCE (TetR family transcriptional regulator n=2 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150PMH5_SORCE)

HSP 1 Score: 142 bits (359), Expect = 8.870e-40
Identity = 87/181 (48.07%), Postives = 105/181 (58.01%), Query Frame = 1
Query:    1 VRKTRQDWVDAGLSLLREEGQQALTIERLTVDLGVSKGSFYHHFGGLPGYRQALLETWETELTLRPMEEAARESNPTDRRRKLGQAVRKLDNRLDLAVRAWGLRDPFVADFVARVDERRLSYLTELQAGLGRARPEFL--ATLEYAAFIGLQHLRLK---ERSSLYEQALQKALGLLAEPQ 528
             R +R DW+D GL  LR+ G+ ALTI+ L   +G +KGSFYHHF  +  + +ALL  WE   T  P+  A        RR++L + VR LD RLDLAVRAW LRD   A  + RVD RR+ YLT L AG G  R   L  A LEYAAFIG Q L      E +   E AL +AL LLA  Q
Sbjct:    2 ARTSRNDWLDEGLDALRDGGEGALTIDGLCARIGRTKGSFYHHFRDIAAFLEALLARWEERQTSAPIRHADGGGAAEQRRQRLEEIVRSLDGRLDLAVRAWALRDERAAAVLRRVDARRIEYLTSLHAGPGGTRNTALQLARLEYAAFIGAQQLFADLPVEATRSLELALHRALELLAADQ 182          
BLAST of mRNA_P-wetherbeei_contig17022.1.1 vs. uniprot
Match: UPI00166B7D31 (TetR/AcrR family transcriptional regulator n=1 Tax=Deinococcus malanensis TaxID=1706855 RepID=UPI00166B7D31)

HSP 1 Score: 140 bits (353), Expect = 4.350e-39
Identity = 79/175 (45.14%), Postives = 106/175 (60.57%), Query Frame = 1
Query:    1 VRKTRQDWVDAGLSLLREEGQQALTIERLTVDLGVSKGSFYHHFGGLPGYRQALLETWETELTLRPMEEAARESNPTDRRRKLGQAVRKLDNRLDLAVRAWGLRDPFVADFVARVDERRLSYLTELQAGLGRARPEFLATLEYAAFIGLQHL-RLKERSSLYEQALQKALGLLAE 522
            +R+TR DW+DAG +LLREEG+ AL +ERL   + +++GSFYHHFGG+P YRQALL+ W+  LT + + +     +  +    L QAV  LD+RLDLA RAW LRD  V + +  VD RR+  LT      G  R   LA L+YA F+G Q L R+   + L E        L+AE
Sbjct:    1 MRRTRGDWLDAGFALLREEGEHALNLERLCGQMSLTRGSFYHHFGGMPEYRQALLQAWQDSLTEQVIAQVPEGVSGHEALSLLNQAVVGLDHRLDLAFRAWSLRDTAVQEVMNEVDARRIGILTLWHEQAGHPRAGELAQLDYATFLGAQALGRIGADNHLQEMHALAMSALVAE 175          
BLAST of mRNA_P-wetherbeei_contig17022.1.1 vs. uniprot
Match: C1CUJ6_DEIDV (HTH tetR-type domain-containing protein n=1 Tax=Deinococcus deserti (strain DSM 17065 / CIP 109153 / LMG 22923 / VCD115) TaxID=546414 RepID=C1CUJ6_DEIDV)

HSP 1 Score: 140 bits (353), Expect = 5.040e-39
Identity = 77/162 (47.53%), Postives = 103/162 (63.58%), Query Frame = 1
Query:    1 VRKTRQDWVDAGLSLLREEGQQALTIERLTVDLGVSKGSFYHHFGGLPGYRQALLETWETELTLRPMEEAARESNPTDRRRKLGQAVRKLDNRLDLAVRAWGLRDPFVADFVARVDERRLSYLTELQAGLGRARPEFLATLEYAAFIGLQHL-RLKERSSLY 483
            +R+ R DW+ AG  LLREEG+QALT+ERL   + +++GSFYHHF G+P YRQALL+ W+  LT + + +     +  +    L QAV  LD+RLDLA RAW LRDP V + ++ VD RR+S LT      G  R   LA LEYA F+G Q L R+ +   L+
Sbjct:    1 MRRKRGDWLAAGFDLLREEGEQALTLERLCGHMALTRGSFYHHFKGMPEYRQALLDAWKDSLTEQVIAQVPVSVSGLEALSVLDQAVTALDHRLDLAFRAWSLRDPAVREAMSEVDARRISALTLWHEQAGHPRAGNLAQLEYATFLGAQALGRVSDEGHLH 162          
BLAST of mRNA_P-wetherbeei_contig17022.1.1 vs. uniprot
Match: A0A3G8YJF2_9DEIO (TetR/AcrR family transcriptional regulator n=2 Tax=Deinococcus TaxID=1298 RepID=A0A3G8YJF2_9DEIO)

HSP 1 Score: 138 bits (348), Expect = 2.020e-38
Identity = 72/152 (47.37%), Postives = 96/152 (63.16%), Query Frame = 1
Query:    1 VRKTRQDWVDAGLSLLREEGQQALTIERLTVDLGVSKGSFYHHFGGLPGYRQALLETWETELTLRPMEEAARESNPTDRRRKLGQAVRKLDNRLDLAVRAWGLRDPFVADFVARVDERRLSYLTELQAGLGRARPEFLATLEYAAFIGLQHL 456
            +R  +QDW+ AG +LLREEG+Q LTIERL   + ++KG+FYHHF    G+R ALL  W    T  P+E+A + +    R  +L   +R LD+ LDL+VRAW LR+  V      VD+ RL+YLTEL   +GRA PE  A  +YA F+G Q L
Sbjct:    1 MRTAKQDWLAAGFALLREEGEQTLTIERLCAAMQLTKGAFYHHFQNAEGFRTALLGAWRERHTTAPIEQAQQAAEGAGRLSQLAAVIRPLDHALDLSVRAWSLRNAEVKAAFEEVDQTRLAYLTELHRQMGRAEPEQWARQDYAEFVGRQCL 152          
BLAST of mRNA_P-wetherbeei_contig17022.1.1 vs. uniprot
Match: A0A016QMF5_9DEIO (HTH tetR-type domain-containing protein n=2 Tax=Deinococcus phoenicis TaxID=1476583 RepID=A0A016QMF5_9DEIO)

HSP 1 Score: 137 bits (346), Expect = 4.290e-38
Identity = 76/163 (46.63%), Postives = 103/163 (63.19%), Query Frame = 1
Query:   34 GLSLLREEGQQALTIERLTVDLGVSKGSFYHHFGGLPGYRQALLETWETELTLRPMEEAARESNPTDRRRKLGQAVRKLDNRLDLAVRAWGLRDPFVADFVARVDERRLSYLTELQAGLGRARPEFLATLEYAAFIGLQHLRLKERSSLYEQALQKALGLLAE 522
            G  LLR+EG+QALT+ERL  ++ +++GSFYHHFG +  YRQALL  W+ +LT   +++     +  D  ++LG+ V +LD+RLDLA R W LRDP V   +  VD RRL+ LTEL    G  R   LA LEYA+FIG Q L   +  +       +ALGLLA+
Sbjct:    2 GFRLLRDEGEQALTLERLCAEMKLTRGSFYHHFGMMADYRQALLHGWQDDLTGAVIQQLPDGGSGVDSPKELGERVARLDHRLDLAFRVWSLRDPEVKAVMDEVDARRLAALTELHRQAGHPRAAELAQLEYASFIGSQALGWGQDRAALRGLHAQALGLLAQ 164          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17022.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00198738338.320e-4550.57TetR/AcrR family transcriptional regulator n=1 Tax... [more]
A0A0K1PPT2_9DELT1.210e-4347.70Transcriptional regulator, TetR family n=1 Tax=Lab... [more]
A0A150PLM3_SORCE2.990e-4351.12TetR family transcriptional regulator n=1 Tax=Sora... [more]
A0A2L0EZ73_SORCE2.480e-4248.35TetR family transcriptional regulator n=1 Tax=Sora... [more]
A0A8H9L9U7_9DEIO6.530e-4247.95TetR family transcriptional regulator n=2 Tax=Dein... [more]
A0A150PMH5_SORCE8.870e-4048.07TetR family transcriptional regulator n=2 Tax=Sora... [more]
UPI00166B7D314.350e-3945.14TetR/AcrR family transcriptional regulator n=1 Tax... [more]
C1CUJ6_DEIDV5.040e-3947.53HTH tetR-type domain-containing protein n=1 Tax=De... [more]
A0A3G8YJF2_9DEIO2.020e-3847.37TetR/AcrR family transcriptional regulator n=2 Tax... [more]
A0A016QMF5_9DEIO4.290e-3846.63HTH tetR-type domain-containing protein n=2 Tax=De... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17022contigP-wetherbeei_contig17022:295..828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1254432.SCE1572_05360
PFAMsTetR_N
Model size534
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.45e-40
EggNOG OGsCOG1309@1|root,COG1309@2|Bacteria,1R59A@1224|Proteobacteria,430YN@68525|delta/epsilon subdivisions,2WVS8@28221|Deltaproteobacteria,2YW07@29|Myxococcales
DescriptionBacterial regulatory proteins, tetR family
Cds size534
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186105.3328524-CDS-P-wetherbeei_contig17022:294..8281683186105.3328524-CDS-P-wetherbeei_contig17022:294..828Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17022 295..828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17022.1.1prot_P-wetherbeei_contig17022.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17022 295..828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17022.1.1

>prot_P-wetherbeei_contig17022.1.1 ID=prot_P-wetherbeei_contig17022.1.1|Name=mRNA_P-wetherbeei_contig17022.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=178bp
VRKTRQDWVDAGLSLLREEGQQALTIERLTVDLGVSKGSFYHHFGGLPGY
RQALLETWETELTLRPMEEAARESNPTDRRRKLGQAVRKLDNRLDLAVRA
WGLRDPFVADFVARVDERRLSYLTELQAGLGRARPEFLATLEYAAFIGLQ
HLRLKERSSLYEQALQKALGLLAEPQD*
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mRNA from alignment at P-wetherbeei_contig17022:295..828+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17022.1.1 ID=mRNA_P-wetherbeei_contig17022.1.1|Name=mRNA_P-wetherbeei_contig17022.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig17022:295..828+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCGCAAAACGCGCCAGGACTGGGTCGACGCCGGCCTCTCCTTGCTTCG CGAGGAGGGGCAACAGGCCCTGACCATCGAGCGATTGACGGTCGACCTGG GCGTGAGCAAGGGGTCATTTTATCACCACTTCGGAGGCTTGCCCGGCTAT CGCCAGGCCCTGCTCGAGACCTGGGAGACCGAGCTGACCCTGCGCCCCAT GGAAGAAGCAGCCCGGGAGAGCAACCCGACGGACCGACGTCGCAAACTCG GCCAGGCGGTGCGCAAGCTCGACAATCGCCTCGATCTGGCCGTGCGCGCC TGGGGGCTTCGAGACCCGTTTGTCGCTGATTTCGTGGCGCGGGTCGACGA AAGGCGCCTTTCTTATCTGACCGAGTTGCAGGCGGGATTGGGACGAGCCC GTCCCGAGTTTTTGGCGACCCTGGAATACGCAGCTTTCATCGGACTGCAG CATCTCAGGCTCAAGGAGCGCAGTTCGCTCTACGAACAGGCCTTGCAAAA AGCCCTGGGACTTCTCGCCGAACCTCAGGACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17022:295..828+

>mRNA_P-wetherbeei_contig17022.1.1 ID=mRNA_P-wetherbeei_contig17022.1.1|Name=mRNA_P-wetherbeei_contig17022.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig17022:295..828+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCGCAAAACGCGCCAGGACTGGGTCGACGCCGGCCTCTCCTTGCTTCG
CGAGGAGGGGCAACAGGCCCTGACCATCGAGCGATTGACGGTCGACCTGG
GCGTGAGCAAGGGGTCATTTTATCACCACTTCGGAGGCTTGCCCGGCTAT
CGCCAGGCCCTGCTCGAGACCTGGGAGACCGAGCTGACCCTGCGCCCCAT
GGAAGAAGCAGCCCGGGAGAGCAACCCGACGGACCGACGTCGCAAACTCG
GCCAGGCGGTGCGCAAGCTCGACAATCGCCTCGATCTGGCCGTGCGCGCC
TGGGGGCTTCGAGACCCGTTTGTCGCTGATTTCGTGGCGCGGGTCGACGA
AAGGCGCCTTTCTTATCTGACCGAGTTGCAGGCGGGATTGGGACGAGCCC
GTCCCGAGTTTTTGGCGACCCTGGAATACGCAGCTTTCATCGGACTGCAG
CATCTCAGGCTCAAGGAGCGCAGTTCGCTCTACGAACAGGCCTTGCAAAA
AGCCCTGGGACTTCTCGCCGAACCTCAGGACTGA
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