mRNA_P-wetherbeei_contig17022.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig17022.1.1 vs. uniprot
Match: UPI0019873833 (TetR/AcrR family transcriptional regulator n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=UPI0019873833) HSP 1 Score: 155 bits (391), Expect = 8.320e-45 Identity = 88/174 (50.57%), Postives = 111/174 (63.79%), Query Frame = 1
Query: 1 VRKTRQDWVDAGLSLLREEGQQALTIERLTVDLGVSKGSFYHHFGGLPGYRQALLETWETELTLRPMEEAARESNPTDRRRKLGQAVRKLDNRLDLAVRAWGLRDPFVADFVARVDERRLSYLTEL-QAGLGRARPEFLATLEYAAFIG---LQHLRLKERSSLYEQALQKALG 510
R TR+DW+DAGL+LLRE G+ ALT++RL LG +KGSFYHHF G+P +ALLE WE T P+ A+RE N RR+ L +V++LD LDL VRAW LRD D VARVD RR+ YL L + AR +ATLEYAAF+G L +R + + E L +ALG
Sbjct: 2 ARTTREDWIDAGLTLLRESGEHALTLDRLCAALGRTKGSFYHHFAGMPELSRALLEAWEQRHTEVPIATASREDNIGKRRKLLDASVKQLDWALDLTVRAWALRDASARDTVARVDARRIDYLESLLPRRVSAARRRAIATLEYAAFLGAMQLDPMRTRGDEARSEALLYEALG 175
BLAST of mRNA_P-wetherbeei_contig17022.1.1 vs. uniprot
Match: A0A0K1PPT2_9DELT (Transcriptional regulator, TetR family n=1 Tax=Labilithrix luteola TaxID=1391654 RepID=A0A0K1PPT2_9DELT) HSP 1 Score: 152 bits (384), Expect = 1.210e-43 Identity = 83/174 (47.70%), Postives = 113/174 (64.94%), Query Frame = 1
Query: 4 RKTRQDWVDAGLSLLREEGQQALTIERLTVDLGVSKGSFYHHFGGLPGYRQALLETWETELTLRPMEEAARESNPTDRRRKLGQAVRKLDNRLDLAVRAWGLRDPFVADFVARVDERRLSYLTELQAGLGRARPEFLATLEYAAFIGLQHLRL---KERSSLYEQALQKALGLL 516
R +R+DW AGLS+LR++G QALTIER+ + L +KGSFYHHF L Y ALL+ WE +LT +P+ ++RE++ + +L V LD+RLD AVRAW L D + V+RVDERRL Y+ +L P LA +EYAAF+GLQHL + R+ +AL++AL LL
Sbjct: 11 RVSRKDWCLAGLSVLRDQGYQALTIERICLLLEKTKGSFYHHFVDLEAYLAALLQQWEADLTEQPIAVSSREASLPGKAARLDDVVLGLDHRLDRAVRAWALHDARAREAVSRVDERRLEYVAQLHRAAKHRNPRVLAEIEYAAFVGLQHLDFMDDRRRAEKVNEALREALALL 184
BLAST of mRNA_P-wetherbeei_contig17022.1.1 vs. uniprot
Match: A0A150PLM3_SORCE (TetR family transcriptional regulator n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150PLM3_SORCE) HSP 1 Score: 151 bits (382), Expect = 2.990e-43 Identity = 91/178 (51.12%), Postives = 108/178 (60.67%), Query Frame = 1
Query: 1 VRKTRQDWVDAGLSLLREEGQQALTIERLTVDLGVSKGSFYHHFGGLPGYRQALLETWETELTLRPMEEAARESNPTDRRRKLGQAVRKLDNRLDLAVRAWGLRDPFVADFVARVDERRLSYLTELQAGLGRARPE--FLATLEYAAFIGLQHL---RLKERSSLYEQALQKALGLLA 519
R +R+DW+D GL LLR+ G+ ALTIE L V LG +KGSFYHHF + + ALL WE T P+ A P RR++L + VR LD RLDLAVRAW LRD A + RVD RR+ YL L A GRAR LA LEYAAFIG Q L E + E+AL +AL LLA
Sbjct: 2 ARTSREDWLDQGLELLRDGGEGALTIEGLCVRLGRTKGSFYHHFQDVAAFLDALLARWEERSTSAPIHHAEAGGAPDGRRQRLSEVVRSLDGRLDLAVRAWALRDERAAAVLRRVDARRVDYLASLHACQGRARDAATLLARLEYAAFIGAQVLFPDLSAESARSLERALDRALELLA 179
BLAST of mRNA_P-wetherbeei_contig17022.1.1 vs. uniprot
Match: A0A2L0EZ73_SORCE (TetR family transcriptional regulator n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A2L0EZ73_SORCE) HSP 1 Score: 149 bits (376), Expect = 2.480e-42 Identity = 88/182 (48.35%), Postives = 110/182 (60.44%), Query Frame = 1
Query: 1 VRKTRQDWVDAGLSLLREEGQQALTIERLTVDLGVSKGSFYHHFGGLPGYRQALLETWETELTLRPMEEAARESN-PTDRRRKLGQAVRKLDNRLDLAVRAWGLRDPFVADFVARVDERRLSYLTELQAGLGRARPE--FLATLEYAAFIGLQHL---RLKERSSLYEQALQKALGLLAEPQ 528
R +R DW+D GL+LLR+ G+ ALTI+ L LG +KGSFYHHF + G+ +ALL WE T P+ A P RR++LG VR LD RL+LAVRAW +RD A + RVD RR+ YL L GR R LA LEYAAF+G Q L + E + E AL++AL LLAE Q
Sbjct: 2 ARTSRNDWLDQGLALLRDGGEGALTIDGLCERLGRTKGSFYHHFEDIAGFLEALLARWEERQTSAPIHHADEGGGAPEQRRQRLGAVVRSLDGRLELAVRAWAIRDERAAAVLRRVDARRIDYLASLHVSEGRTRDAALLLARLEYAAFVGAQQLFSDLMDESARSLEIALERALELLAEDQ 183
BLAST of mRNA_P-wetherbeei_contig17022.1.1 vs. uniprot
Match: A0A8H9L9U7_9DEIO (TetR family transcriptional regulator n=2 Tax=Deinococcus TaxID=1298 RepID=A0A8H9L9U7_9DEIO) HSP 1 Score: 147 bits (371), Expect = 6.530e-42 Identity = 82/171 (47.95%), Postives = 108/171 (63.16%), Query Frame = 1
Query: 1 VRKTRQDWVDAGLSLLREEGQQALTIERLTVDLGVSKGSFYHHFGGLPGYRQALLETWETELTLRPMEEAARESNPTDRRRKLGQAVRKLDNRLDLAVRAWGLRDPFVADFVARVDERRLSYLTELQAGLGRARPEFLATLEYAAFIGLQHLRLKERSSLYEQALQKALGL 513
+R+TR DW+ AGL+LLR+EG+ +LTI+RL +G+SKGSFYHHF YR ALL+ WE T P+E+ A ++P R L + LD+ L+LAVRAW +R+ V + RVDERRL++L ++ LG A LA LEYAAF+GLQ L RS L Q GL
Sbjct: 1 MRRTRTDWLSAGLALLRDEGEHSLTIDRLCRAIGLSKGSFYHHFQNADAYRAALLDRWEQTQTDAPIEQTAGTADPL---RALQTVIEPLDHPLELAVRAWAVRNAEVRAALHRVDERRLAHLKQIHDQLGHAHAAELAALEYAAFVGLQTLGWTNRSDLARLHAQALAGL 168
BLAST of mRNA_P-wetherbeei_contig17022.1.1 vs. uniprot
Match: A0A150PMH5_SORCE (TetR family transcriptional regulator n=2 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150PMH5_SORCE) HSP 1 Score: 142 bits (359), Expect = 8.870e-40 Identity = 87/181 (48.07%), Postives = 105/181 (58.01%), Query Frame = 1
Query: 1 VRKTRQDWVDAGLSLLREEGQQALTIERLTVDLGVSKGSFYHHFGGLPGYRQALLETWETELTLRPMEEAARESNPTDRRRKLGQAVRKLDNRLDLAVRAWGLRDPFVADFVARVDERRLSYLTELQAGLGRARPEFL--ATLEYAAFIGLQHLRLK---ERSSLYEQALQKALGLLAEPQ 528
R +R DW+D GL LR+ G+ ALTI+ L +G +KGSFYHHF + + +ALL WE T P+ A RR++L + VR LD RLDLAVRAW LRD A + RVD RR+ YLT L AG G R L A LEYAAFIG Q L E + E AL +AL LLA Q
Sbjct: 2 ARTSRNDWLDEGLDALRDGGEGALTIDGLCARIGRTKGSFYHHFRDIAAFLEALLARWEERQTSAPIRHADGGGAAEQRRQRLEEIVRSLDGRLDLAVRAWALRDERAAAVLRRVDARRIEYLTSLHAGPGGTRNTALQLARLEYAAFIGAQQLFADLPVEATRSLELALHRALELLAADQ 182
BLAST of mRNA_P-wetherbeei_contig17022.1.1 vs. uniprot
Match: UPI00166B7D31 (TetR/AcrR family transcriptional regulator n=1 Tax=Deinococcus malanensis TaxID=1706855 RepID=UPI00166B7D31) HSP 1 Score: 140 bits (353), Expect = 4.350e-39 Identity = 79/175 (45.14%), Postives = 106/175 (60.57%), Query Frame = 1
Query: 1 VRKTRQDWVDAGLSLLREEGQQALTIERLTVDLGVSKGSFYHHFGGLPGYRQALLETWETELTLRPMEEAARESNPTDRRRKLGQAVRKLDNRLDLAVRAWGLRDPFVADFVARVDERRLSYLTELQAGLGRARPEFLATLEYAAFIGLQHL-RLKERSSLYEQALQKALGLLAE 522
+R+TR DW+DAG +LLREEG+ AL +ERL + +++GSFYHHFGG+P YRQALL+ W+ LT + + + + + L QAV LD+RLDLA RAW LRD V + + VD RR+ LT G R LA L+YA F+G Q L R+ + L E L+AE
Sbjct: 1 MRRTRGDWLDAGFALLREEGEHALNLERLCGQMSLTRGSFYHHFGGMPEYRQALLQAWQDSLTEQVIAQVPEGVSGHEALSLLNQAVVGLDHRLDLAFRAWSLRDTAVQEVMNEVDARRIGILTLWHEQAGHPRAGELAQLDYATFLGAQALGRIGADNHLQEMHALAMSALVAE 175
BLAST of mRNA_P-wetherbeei_contig17022.1.1 vs. uniprot
Match: C1CUJ6_DEIDV (HTH tetR-type domain-containing protein n=1 Tax=Deinococcus deserti (strain DSM 17065 / CIP 109153 / LMG 22923 / VCD115) TaxID=546414 RepID=C1CUJ6_DEIDV) HSP 1 Score: 140 bits (353), Expect = 5.040e-39 Identity = 77/162 (47.53%), Postives = 103/162 (63.58%), Query Frame = 1
Query: 1 VRKTRQDWVDAGLSLLREEGQQALTIERLTVDLGVSKGSFYHHFGGLPGYRQALLETWETELTLRPMEEAARESNPTDRRRKLGQAVRKLDNRLDLAVRAWGLRDPFVADFVARVDERRLSYLTELQAGLGRARPEFLATLEYAAFIGLQHL-RLKERSSLY 483
+R+ R DW+ AG LLREEG+QALT+ERL + +++GSFYHHF G+P YRQALL+ W+ LT + + + + + L QAV LD+RLDLA RAW LRDP V + ++ VD RR+S LT G R LA LEYA F+G Q L R+ + L+
Sbjct: 1 MRRKRGDWLAAGFDLLREEGEQALTLERLCGHMALTRGSFYHHFKGMPEYRQALLDAWKDSLTEQVIAQVPVSVSGLEALSVLDQAVTALDHRLDLAFRAWSLRDPAVREAMSEVDARRISALTLWHEQAGHPRAGNLAQLEYATFLGAQALGRVSDEGHLH 162
BLAST of mRNA_P-wetherbeei_contig17022.1.1 vs. uniprot
Match: A0A3G8YJF2_9DEIO (TetR/AcrR family transcriptional regulator n=2 Tax=Deinococcus TaxID=1298 RepID=A0A3G8YJF2_9DEIO) HSP 1 Score: 138 bits (348), Expect = 2.020e-38 Identity = 72/152 (47.37%), Postives = 96/152 (63.16%), Query Frame = 1
Query: 1 VRKTRQDWVDAGLSLLREEGQQALTIERLTVDLGVSKGSFYHHFGGLPGYRQALLETWETELTLRPMEEAARESNPTDRRRKLGQAVRKLDNRLDLAVRAWGLRDPFVADFVARVDERRLSYLTELQAGLGRARPEFLATLEYAAFIGLQHL 456
+R +QDW+ AG +LLREEG+Q LTIERL + ++KG+FYHHF G+R ALL W T P+E+A + + R +L +R LD+ LDL+VRAW LR+ V VD+ RL+YLTEL +GRA PE A +YA F+G Q L
Sbjct: 1 MRTAKQDWLAAGFALLREEGEQTLTIERLCAAMQLTKGAFYHHFQNAEGFRTALLGAWRERHTTAPIEQAQQAAEGAGRLSQLAAVIRPLDHALDLSVRAWSLRNAEVKAAFEEVDQTRLAYLTELHRQMGRAEPEQWARQDYAEFVGRQCL 152
BLAST of mRNA_P-wetherbeei_contig17022.1.1 vs. uniprot
Match: A0A016QMF5_9DEIO (HTH tetR-type domain-containing protein n=2 Tax=Deinococcus phoenicis TaxID=1476583 RepID=A0A016QMF5_9DEIO) HSP 1 Score: 137 bits (346), Expect = 4.290e-38 Identity = 76/163 (46.63%), Postives = 103/163 (63.19%), Query Frame = 1
Query: 34 GLSLLREEGQQALTIERLTVDLGVSKGSFYHHFGGLPGYRQALLETWETELTLRPMEEAARESNPTDRRRKLGQAVRKLDNRLDLAVRAWGLRDPFVADFVARVDERRLSYLTELQAGLGRARPEFLATLEYAAFIGLQHLRLKERSSLYEQALQKALGLLAE 522
G LLR+EG+QALT+ERL ++ +++GSFYHHFG + YRQALL W+ +LT +++ + D ++LG+ V +LD+RLDLA R W LRDP V + VD RRL+ LTEL G R LA LEYA+FIG Q L + + +ALGLLA+
Sbjct: 2 GFRLLRDEGEQALTLERLCAEMKLTRGSFYHHFGMMADYRQALLHGWQDDLTGAVIQQLPDGGSGVDSPKELGERVARLDHRLDLAFRVWSLRDPEVKAVMDEVDARRLAALTELHRQAGHPRAAELAQLEYASFIGSQALGWGQDRAALRGLHAQALGLLAQ 164 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17022.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig17022.1.1 >prot_P-wetherbeei_contig17022.1.1 ID=prot_P-wetherbeei_contig17022.1.1|Name=mRNA_P-wetherbeei_contig17022.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=178bp VRKTRQDWVDAGLSLLREEGQQALTIERLTVDLGVSKGSFYHHFGGLPGYback to top mRNA from alignment at P-wetherbeei_contig17022:295..828+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig17022.1.1 ID=mRNA_P-wetherbeei_contig17022.1.1|Name=mRNA_P-wetherbeei_contig17022.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig17022:295..828+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig17022:295..828+ >mRNA_P-wetherbeei_contig17022.1.1 ID=mRNA_P-wetherbeei_contig17022.1.1|Name=mRNA_P-wetherbeei_contig17022.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig17022:295..828+ (Phaeothamnion wetherbeei SAG_119_79)back to top |