mRNA_P-wetherbeei_contig170.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig170.2.1
Unique NamemRNA_P-wetherbeei_contig170.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig170.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig170contigP-wetherbeei_contig170:8574..9222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FPN2
Preferred nameCC2D2A
PFAMsC2,CC2D2AN-C2
Model size478
Max annot lvl2759|Eukaryota
KEGG koko:K16457,ko:K19352
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0001654,GO:0001838,GO:0001841,GO:0001843,GO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005929,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009792,GO:0009799,GO:0009855,GO:0009888,GO:0009987,GO:0014020,GO:0016043,GO:0016331,GO:0021915,GO:0022406,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030425,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035082,GO:0035148,GO:0035239,GO:0035295,GO:0035869,GO:0036038,GO:0036477,GO:0042995,GO:0043005,GO:0043009,GO:0043010,GO:0043226,GO:0044085,GO:0044292,GO:0044422,GO:0044424,GO:0044441,GO:0044444,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0048513,GO:0048568,GO:0048598,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051640,GO:0051641,GO:0051716,GO:0060271,GO:0060429,GO:0060562,GO:0060606,GO:0061512,GO:0065007,GO:0070727,GO:0070925,GO:0071840,GO:0072175,GO:0072359,GO:0097447,GO:0097458,GO:0097711,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1904491,GO:1905515,GO:1990403
Exons2
Evalue4.07e-09
EggNOG OGsKOG3639@1|root,KOG3639@2759|Eukaryota
Descriptionprotein localization to ciliary transition zone
Cds size477
COG categoryS
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186104.7804227-CDS-P-wetherbeei_contig170:8574..89251683186104.7804227-CDS-P-wetherbeei_contig170:8574..8925Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig170 8575..8925 -
1683186104.7924707-CDS-P-wetherbeei_contig170:9096..92221683186104.7924707-CDS-P-wetherbeei_contig170:9096..9222Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig170 9097..9222 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig170.2.1prot_P-wetherbeei_contig170.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig170 8575..9222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig170.2.1

>prot_P-wetherbeei_contig170.2.1 ID=prot_P-wetherbeei_contig170.2.1|Name=mRNA_P-wetherbeei_contig170.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=159bp
GDEVAALESDGLEVAWAPAGMEPLLGQGHCQGRLVRDAVAAAAEEKEAGD
DSATDHSESDCGMDGGGGTSDGKRRRCHNRDAAIIHDGAPLGGDASGASA
FFSAPGVLRMLPDPLLPVAVRRERPPTEDAAPVPPALRTVQPRPVRGVGA
ASILGPLNG
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mRNA from alignment at P-wetherbeei_contig170:8574..9222-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig170.2.1 ID=mRNA_P-wetherbeei_contig170.2.1|Name=mRNA_P-wetherbeei_contig170.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=649bp|location=Sequence derived from alignment at P-wetherbeei_contig170:8574..9222- (Phaeothamnion wetherbeei SAG_119_79)
GGGGACGAAGTGGCGGCGCTGGAAAGCGATGGGCTGGAAGTGGCGTGGGC
GCCGGCGGGCATGGAGCCGCTCCTGGGGCAGGGCCACTGCCAGGGACGGC
TGGTGAGGGACGCCGTCGCCGCCGCCGTCGAAGCCGAGAGCCGCGCGGCC
GAGAGACGAAGGAATGAAGCAAATTTTGGCAGAGGCATCCGCGGCGGGAG
CAGAGTTGGCTGTGGCGGCGATGGCGAGGGCGGTGACGGCGGCAGCGGCA
GCGACAGGGCGGGCGAACCGCCGGTCGCTAGCGTCCGGCGCAGAGAGGCC
GAGGAGAAGGAGGCGGGCGATGATAGTGCGACGGACCACTCCGAAAGCGA
CTGCGGCATGGATGGCGGAGGCGGCACCAGCGACGGCAAGCGCCGTCGCT
GCCACAACAGAGACGCAGCCATCATACACGACGGTGCCCCGCTAGGTGGG
GACGCGAGCGGCGCGTCAGCCTTCTTTTCTGCTCCGGGTGTGCTGCGCAT
GCTGCCTGACCCGCTGCTGCCGGTTGCCGTACGGCGGGAGCGCCCACCCA
CCGAGGACGCCGCGCCCGTCCCACCGGCCCTGCGCACCGTCCAGCCGCGG
CCTGTCCGCGGCGTTGGCGCCGCCAGCATTCTCGGCCCACTGAACGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig170:8574..9222-

>mRNA_P-wetherbeei_contig170.2.1 ID=mRNA_P-wetherbeei_contig170.2.1|Name=mRNA_P-wetherbeei_contig170.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig170:8574..9222- (Phaeothamnion wetherbeei SAG_119_79)
GGGGACGAAGTGGCGGCGCTGGAAAGCGATGGGCTGGAAGTGGCGTGGGC
GCCGGCGGGCATGGAGCCGCTCCTGGGGCAGGGCCACTGCCAGGGACGGC
TGGTGAGGGACGCCGTCGCCGCCGCCGCCGAGGAGAAGGAGGCGGGCGAT
GATAGTGCGACGGACCACTCCGAAAGCGACTGCGGCATGGATGGCGGAGG
CGGCACCAGCGACGGCAAGCGCCGTCGCTGCCACAACAGAGACGCAGCCA
TCATACACGACGGTGCCCCGCTAGGTGGGGACGCGAGCGGCGCGTCAGCC
TTCTTTTCTGCTCCGGGTGTGCTGCGCATGCTGCCTGACCCGCTGCTGCC
GGTTGCCGTACGGCGGGAGCGCCCACCCACCGAGGACGCCGCGCCCGTCC
CACCGGCCCTGCGCACCGTCCAGCCGCGGCCTGTCCGCGGCGTTGGCGCC
GCCAGCATTCTCGGCCCACTGAACGGC
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