mRNA_P-wetherbeei_contig17.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17.6.1
Unique NamemRNA_P-wetherbeei_contig17.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17contigP-wetherbeei_contig17:18223..20241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G0V4
PFAMsCLASP_N
Model size1843
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.73e-16
EggNOG OGsKOG2933@1|root,KOG2933@2759|Eukaryota
Descriptionnon-motile cilium assembly
Cds size1842
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186104.4214642-CDS-P-wetherbeei_contig17:18222..200091683186104.4214642-CDS-P-wetherbeei_contig17:18222..20009Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17 18223..20009 +
1683186104.4304867-CDS-P-wetherbeei_contig17:20186..202411683186104.4304867-CDS-P-wetherbeei_contig17:20186..20241Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17 20187..20241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17.6.1prot_P-wetherbeei_contig17.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17 18223..20241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17.6.1

>prot_P-wetherbeei_contig17.6.1 ID=prot_P-wetherbeei_contig17.6.1|Name=mRNA_P-wetherbeei_contig17.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=614bp
GISLVAGNGTPRGAGRRRPRNGDNLGGGGDGADRRARDGTPLALVSAGAD
GTAVPGFFQDGASSASPPPRAASLASGTNHSQQGAGSGGSARRDESDGSG
GSGGEGYVPSWTSSRGPTHGQFEASAAPGAAAASNLIGAGSASAAAAAVK
SGRSAGGGGNARQARARDRGNAVAAGLDATAPLPRPNHLFDDGTDPAASH
PPRGSPWREHQGRGTERERSNSYGSMDTGAPVGAASRQNGGGWPSPFVTD
DEDSRSATPQSPQRAMDSSMLTSLKKNLANRRGSRQQQHQQLHRQAGAAA
AEAAAAGGASDAGSWGVSSDGTRSHAIGRRAASAAAASMVAADSRRWDEP
DGGVAAASAQVPFGRPSRTEPQTPMPVGVYDGRGERLHMQTAAQQPMPFA
RRGGGGDDGLSDAAVRSGDVEEGSFPEHEGGFGGNPDSRPIRPMPEWLNR
SNEDGAAPDGGPARQHSPVVAKTRAPHTSMATLQRQQRLREQQKQRQQQQ
EENGNDNKACAYGDVAMQGAWLDQPLSAAAGGAANCTSPKATAARNESRS
SPPRHPAVVPPSVSPTKMLALKAETFDYLRSEDFRPSPSPQQELVRTLAS
LEQDDWPEIYHSLN
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mRNA from alignment at P-wetherbeei_contig17:18223..20241+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17.6.1 ID=mRNA_P-wetherbeei_contig17.6.1|Name=mRNA_P-wetherbeei_contig17.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2019bp|location=Sequence derived from alignment at P-wetherbeei_contig17:18223..20241+ (Phaeothamnion wetherbeei SAG_119_79)
GGCATCAGTCTGGTCGCGGGCAACGGGACCCCACGCGGCGCTGGTCGGCG
GCGTCCACGAAATGGTGATAACTTGGGCGGTGGCGGCGACGGCGCCGACA
GGCGTGCTCGCGACGGCACACCTCTAGCCCTCGTCAGCGCTGGAGCCGAC
GGCACCGCCGTGCCAGGCTTCTTTCAGGACGGAGCCTCGTCGGCGTCGCC
GCCGCCAAGGGCCGCGAGTTTGGCATCCGGTACCAATCACAGCCAGCAAG
GGGCCGGCAGCGGCGGAAGTGCGAGGCGCGACGAAAGCGACGGCAGCGGC
GGCAGCGGCGGCGAAGGCTACGTGCCATCATGGACAAGCAGCAGAGGCCC
GACGCACGGTCAATTCGAGGCGTCGGCAGCGCCTGGTGCCGCCGCCGCAT
CTAACCTTATTGGAGCTGGGAGCGCGAGCGCGGCTGCTGCCGCTGTCAAG
AGTGGGAGGAGCGCTGGCGGAGGCGGCAATGCCCGCCAAGCACGCGCTCG
CGACCGCGGCAATGCAGTCGCGGCTGGGCTTGACGCAACGGCACCGCTGC
CGCGACCAAACCACCTGTTTGACGACGGGACCGATCCGGCGGCGAGTCAT
CCGCCTCGAGGCTCTCCGTGGCGAGAGCATCAGGGCCGAGGCACCGAACG
GGAACGCAGCAACTCATACGGCTCCATGGACACCGGGGCACCGGTTGGAG
CAGCTAGCAGGCAGAACGGGGGGGGGTGGCCATCTCCGTTCGTCACGGAT
GACGAAGATAGTAGGTCTGCGACGCCGCAGTCGCCACAGCGGGCGATGGA
TTCCAGCATGCTGACCTCGCTGAAGAAGAACCTGGCTAACCGGCGCGGCT
CCAGGCAACAGCAACACCAGCAGCTACACCGGCAGGCGGGTGCGGCGGCG
GCGGAAGCGGCTGCGGCGGGCGGCGCATCGGATGCTGGATCATGGGGCGT
CAGTAGCGACGGGACCCGCAGTCATGCCATCGGCCGTCGAGCGGCATCGG
CCGCTGCAGCGTCAATGGTGGCCGCGGATTCTCGGCGCTGGGACGAACCG
GACGGCGGCGTGGCAGCTGCGTCCGCGCAGGTGCCATTCGGTCGGCCCAG
CAGGACGGAGCCGCAAACGCCAATGCCGGTGGGGGTCTACGACGGACGGG
GCGAGCGCCTGCACATGCAGACAGCGGCGCAGCAGCCCATGCCCTTTGCT
CGCCGGGGCGGCGGCGGCGACGACGGCCTTTCCGACGCCGCTGTGAGGTC
AGGGGACGTCGAGGAGGGATCTTTTCCGGAGCACGAAGGAGGATTCGGCG
GCAATCCAGACAGCCGCCCCATTCGGCCGATGCCAGAGTGGCTGAACCGC
TCCAATGAGGACGGAGCGGCACCGGACGGTGGCCCAGCACGCCAGCACTC
GCCTGTGGTGGCGAAAACCCGCGCGCCACACACGTCGATGGCTACGTTGC
AGCGGCAGCAGCGGTTGCGGGAGCAGCAAAAGCAGCGGCAGCAGCAGCAG
GAAGAAAACGGTAACGACAACAAGGCCTGCGCTTACGGAGACGTGGCCAT
GCAGGGCGCTTGGCTCGACCAACCGTTGTCCGCAGCGGCGGGGGGAGCTG
CGAACTGTACCTCTCCGAAGGCGACAGCGGCCCGCAATGAGTCTCGTTCG
TCGCCGCCGCGGCACCCTGCCGTAGTGCCGCCGAGCGTGAGCCCCACCAA
GATGCTGGCGCTCAAGGCAGAGACTTTCGATTACCTGCGCTCGGAGGACT
TTCGGCCGAGCCCCAGCCCACAGCAGGAGCTCGTAAGGTGAGGGCATTTG
CATGCCTCCGGTTTGTTTTCAGTTGATTGGGTTGCATTGGAGAAAGGAGG
GCTCGTGGGGATCAGGAGGAAAGAGTGTGTTTCAGTGGTGGCTTTCTCTG
CGGTTCCACTTTGTCCCGCAGGTTGCCCAAACCCTGTTGCCCGCCGCCGT
TATTTGCCAAGCAGGACGCTGGCGTCGCTAGAGCAGGACGACTGGCCGGA
GATTTATCACAGCCTGAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17:18223..20241+

>mRNA_P-wetherbeei_contig17.6.1 ID=mRNA_P-wetherbeei_contig17.6.1|Name=mRNA_P-wetherbeei_contig17.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1842bp|location=Sequence derived from alignment at P-wetherbeei_contig17:18223..20241+ (Phaeothamnion wetherbeei SAG_119_79)
GGCATCAGTCTGGTCGCGGGCAACGGGACCCCACGCGGCGCTGGTCGGCG
GCGTCCACGAAATGGTGATAACTTGGGCGGTGGCGGCGACGGCGCCGACA
GGCGTGCTCGCGACGGCACACCTCTAGCCCTCGTCAGCGCTGGAGCCGAC
GGCACCGCCGTGCCAGGCTTCTTTCAGGACGGAGCCTCGTCGGCGTCGCC
GCCGCCAAGGGCCGCGAGTTTGGCATCCGGTACCAATCACAGCCAGCAAG
GGGCCGGCAGCGGCGGAAGTGCGAGGCGCGACGAAAGCGACGGCAGCGGC
GGCAGCGGCGGCGAAGGCTACGTGCCATCATGGACAAGCAGCAGAGGCCC
GACGCACGGTCAATTCGAGGCGTCGGCAGCGCCTGGTGCCGCCGCCGCAT
CTAACCTTATTGGAGCTGGGAGCGCGAGCGCGGCTGCTGCCGCTGTCAAG
AGTGGGAGGAGCGCTGGCGGAGGCGGCAATGCCCGCCAAGCACGCGCTCG
CGACCGCGGCAATGCAGTCGCGGCTGGGCTTGACGCAACGGCACCGCTGC
CGCGACCAAACCACCTGTTTGACGACGGGACCGATCCGGCGGCGAGTCAT
CCGCCTCGAGGCTCTCCGTGGCGAGAGCATCAGGGCCGAGGCACCGAACG
GGAACGCAGCAACTCATACGGCTCCATGGACACCGGGGCACCGGTTGGAG
CAGCTAGCAGGCAGAACGGGGGGGGGTGGCCATCTCCGTTCGTCACGGAT
GACGAAGATAGTAGGTCTGCGACGCCGCAGTCGCCACAGCGGGCGATGGA
TTCCAGCATGCTGACCTCGCTGAAGAAGAACCTGGCTAACCGGCGCGGCT
CCAGGCAACAGCAACACCAGCAGCTACACCGGCAGGCGGGTGCGGCGGCG
GCGGAAGCGGCTGCGGCGGGCGGCGCATCGGATGCTGGATCATGGGGCGT
CAGTAGCGACGGGACCCGCAGTCATGCCATCGGCCGTCGAGCGGCATCGG
CCGCTGCAGCGTCAATGGTGGCCGCGGATTCTCGGCGCTGGGACGAACCG
GACGGCGGCGTGGCAGCTGCGTCCGCGCAGGTGCCATTCGGTCGGCCCAG
CAGGACGGAGCCGCAAACGCCAATGCCGGTGGGGGTCTACGACGGACGGG
GCGAGCGCCTGCACATGCAGACAGCGGCGCAGCAGCCCATGCCCTTTGCT
CGCCGGGGCGGCGGCGGCGACGACGGCCTTTCCGACGCCGCTGTGAGGTC
AGGGGACGTCGAGGAGGGATCTTTTCCGGAGCACGAAGGAGGATTCGGCG
GCAATCCAGACAGCCGCCCCATTCGGCCGATGCCAGAGTGGCTGAACCGC
TCCAATGAGGACGGAGCGGCACCGGACGGTGGCCCAGCACGCCAGCACTC
GCCTGTGGTGGCGAAAACCCGCGCGCCACACACGTCGATGGCTACGTTGC
AGCGGCAGCAGCGGTTGCGGGAGCAGCAAAAGCAGCGGCAGCAGCAGCAG
GAAGAAAACGGTAACGACAACAAGGCCTGCGCTTACGGAGACGTGGCCAT
GCAGGGCGCTTGGCTCGACCAACCGTTGTCCGCAGCGGCGGGGGGAGCTG
CGAACTGTACCTCTCCGAAGGCGACAGCGGCCCGCAATGAGTCTCGTTCG
TCGCCGCCGCGGCACCCTGCCGTAGTGCCGCCGAGCGTGAGCCCCACCAA
GATGCTGGCGCTCAAGGCAGAGACTTTCGATTACCTGCGCTCGGAGGACT
TTCGGCCGAGCCCCAGCCCACAGCAGGAGCTCGTAAGGACGCTGGCGTCG
CTAGAGCAGGACGACTGGCCGGAGATTTATCACAGCCTGAAC
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