mRNA_P-wetherbeei_contig17.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17.3.1
Unique NamemRNA_P-wetherbeei_contig17.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17contigP-wetherbeei_contig17:13345..14674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size792
Hectar predicted targeting categoryother localisation
Exons3
Cds size615
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186104.3747528-UTR-P-wetherbeei_contig17:13344..135211683186104.3747528-UTR-P-wetherbeei_contig17:13344..13521Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17 13345..13521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186104.3829-CDS-P-wetherbeei_contig17:13521..137141683186104.3829-CDS-P-wetherbeei_contig17:13521..13714Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17 13522..13714 +
1683186104.3908186-CDS-P-wetherbeei_contig17:13943..142441683186104.3908186-CDS-P-wetherbeei_contig17:13943..14244Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17 13944..14244 +
1683186104.3981106-CDS-P-wetherbeei_contig17:14553..146741683186104.3981106-CDS-P-wetherbeei_contig17:14553..14674Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17 14554..14674 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17.3.1prot_P-wetherbeei_contig17.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17 13522..14674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17.3.1

>prot_P-wetherbeei_contig17.3.1 ID=prot_P-wetherbeei_contig17.3.1|Name=mRNA_P-wetherbeei_contig17.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=205bp
MERIARPSARPQAAAAEALNNTTTEARDALENLQRLRALIAGGGRAQGVR
QRVGNETVFHEGPAGTLALDATPEPKAVFSTLRTMLRPQRLAREDLASGD
AEQLPVSTAVASAALTTTAEAVPWLLRWYAKQTHQGRFQGPGHAGHVVLG
CLASTLPAVVDCLGIPVLQDSALSVLLACVNEQRTFPEVGPIMIDQVCYV
AGFL*
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mRNA from alignment at P-wetherbeei_contig17:13345..14674+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17.3.1 ID=mRNA_P-wetherbeei_contig17.3.1|Name=mRNA_P-wetherbeei_contig17.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1330bp|location=Sequence derived from alignment at P-wetherbeei_contig17:13345..14674+ (Phaeothamnion wetherbeei SAG_119_79)
GCCACCCCCTAAACTACGGCCACCGGCTACTAGTACACAAAAAAAGGGTT
TCGGGAAGGTCTCCCTGCCCAATGCGAGCGGCTGGTCGATTGTAGGAAGC
GCAAGTTTTTTTACTTTCTCTGCACGGCGGACGCTCCTGAATGATACGAT
TGGCTAAAGGAGAGCCCTGCAGTCTGGATGGAGAGAATCGCAAGGCCATC
GGCTCGGCCCCAAGCAGCTGCTGCCGAGGCTCTGAATAATACGACAACCG
AAGCTCGGGACGCGTTGGAAAATCTTCAACGGCTTCGCGCGTTGATCGCT
GGGGGAGGTCGGGCTCAGGGGGTTCGTCAACGTGTAGGCAACGAAACTGT
TTTCCACGAAGGCCCGGCAGGTGATTCGTTTCTGTTCTATGATATTTTGG
AACGCTCTAGCCTCACTTTTTGAAACGAGGAAGGATTGCTAAGCATTTAG
TCAAGATAATAGCGAGAGGGCGCGTTAAACAATTTAAACAAGTCAGATAT
CTTCAGGCCATTTCCATCTCGCGGGTGCTACCAATGGATGCAGCGCCGCT
GCGAAGGACCTGTTGTTATCCTCTCAAATGACAGCTATCTCCTCTGCAGG
TACTTTGGCCCTTGATGCCACTCCGGAGCCAAAGGCCGTGTTTTCGACGC
TGCGCACGATGCTGCGCCCACAGCGTCTCGCCCGAGAGGACCTCGCCAGT
GGCGACGCTGAGCAACTACCAGTGTCGACAGCGGTCGCATCGGCAGCGCT
CACCACTACGGCTGAAGCTGTCCCATGGCTGCTGCGCTGGTACGCCAAGC
AGACGCACCAGGGGCGCTTCCAGGGGCCGGGCCACGCGGGCCACGTGGTG
CTCGGCTGCTTGGCCTCCACTTTGCCGGCCGTCGTCGACTGCCTCGGCAT
GTAAGTTCATTTTGGGAAAAATAACTCAGTAAACATCTTTTTCGCCTCGT
AGGTGTACGAACCTTTCAATGTCATGCTTTTCCAAGCATATCTCGTTTAT
TGAGCGGGTGTTGGCCTGTTGTTTAAAGTTGAGTGAGCCATTTCGAAACG
GCCGCAAGATTTCATTGGCGATGGTCCGTCGTTTTAATGACATAACCCCT
TTTCTGAGATTCTTGCAATGGAAGGACTCTCGTTCCCACTCTCACTTTCA
ATGACCTCTCCGTCACATATGTTTTGCATCTCCATCCCAACTTTACCTCT
TGACGACAGTCCGGTGTTGCAAGACTCTGCGCTTTCGGTCCTTCTGGCCT
GTGTTAATGAGCAGCGGACCTTTCCGGAGGTCGGGCCAATTATGATAGAT
CAGGTATGCTACGTCGCCGGGTTTCTGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17:13345..14674+

>mRNA_P-wetherbeei_contig17.3.1 ID=mRNA_P-wetherbeei_contig17.3.1|Name=mRNA_P-wetherbeei_contig17.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=615bp|location=Sequence derived from alignment at P-wetherbeei_contig17:13345..14674+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGAGAATCGCAAGGCCATCGGCTCGGCCCCAAGCAGCTGCTGCCGA
GGCTCTGAATAATACGACAACCGAAGCTCGGGACGCGTTGGAAAATCTTC
AACGGCTTCGCGCGTTGATCGCTGGGGGAGGTCGGGCTCAGGGGGTTCGT
CAACGTGTAGGCAACGAAACTGTTTTCCACGAAGGCCCGGCAGGTACTTT
GGCCCTTGATGCCACTCCGGAGCCAAAGGCCGTGTTTTCGACGCTGCGCA
CGATGCTGCGCCCACAGCGTCTCGCCCGAGAGGACCTCGCCAGTGGCGAC
GCTGAGCAACTACCAGTGTCGACAGCGGTCGCATCGGCAGCGCTCACCAC
TACGGCTGAAGCTGTCCCATGGCTGCTGCGCTGGTACGCCAAGCAGACGC
ACCAGGGGCGCTTCCAGGGGCCGGGCCACGCGGGCCACGTGGTGCTCGGC
TGCTTGGCCTCCACTTTGCCGGCCGTCGTCGACTGCCTCGGCATTCCGGT
GTTGCAAGACTCTGCGCTTTCGGTCCTTCTGGCCTGTGTTAATGAGCAGC
GGACCTTTCCGGAGGTCGGGCCAATTATGATAGATCAGGTATGCTACGTC
GCCGGGTTTCTGTGA
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